Rw5G006760
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013762
Physical Location & Seq
Forward (+)
7011790 .. 7013740
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006760.1

Sequence Viewer

Length: 1164 bp
ATGCAGGGTGATAACAAAGATACAAATCTTGCTGTGATCTCATCCAGCATAACAGCAGCATATAGTTTGTGTGGAGCCTGCTTAATTGTCTTTCCTATAGCTTGGCTTGCAAACTCTTCCAGTTACGTCTTTCAGGGTGAACTTGTCTATGGTAACACGAGTCCATTGCTCATTACCTTCAAATTTGGAAGCCTCATAGCATGTTTTCTCCTGGCCATGGCATGCTTTGCTCGATCAGCAAAGCACTTCAACCAAGCATACTATCTAATAAGCTCACGAAACAGGAATATTAAGGCCAGCGATGTGGAGGCGGCAATCAGGGCAGTTATAGGGGGAGATCATTTCCACTCACTTGGGATGAGATCTCTAAAATGTGCTGGCACTCTGCTGCTATGGTTTTTCGGTCCTATCCCAATGTTTCTTTCCTCTGTTGCTTTAGTCATATTCCTCCATGACAATTATACTGGTCGACTATATGTTCATAATAGAGTCAATTTTCAAATTCAGTCTTTTCAGAAACTGGGGTTTAGTGAGTCTGAGATTTTGTGTGCCCTTCATGAAGATAATTTGATTGGTAGAGGGCCATCTGGGGAAGTGTACAAGGTTGTGTTAACCAATGGTAAAGTTATTGCAGTGAAGAAACCGCGGAGAGGAAGAGTGAACGAGTGCGAAAACAACAATTTTGAGAAAGGTATGGTCCAAGATGATGGCTTTATAGCAGCAGGGGTTGACACCTTGGGGAGGATGCACATGAACATTATGAAGCCTAGTAAATCTAATGTTGTTGCAGAATTTCCGCACGCACACGGGTTGAATGGGAAAAGTGATATATACAACTTTGGTGTGGTGATGCTGGAATTGGTTACTGGGAAACTTCCAGTTAAACCGGAACCAGGAGAAAATGACCTGGTGAAGTGGGTCCGTAGAACTTTGCATCAGAAAGGATTGGACCATGTCCTTGACCCCAACCTTGATTCTTGTTACAAGGAAGAAGTACACAAGGTCCTCAACATTGGGCTTCGCTGCACTAGTTCTCTTCCAGTCAATCGACCATCCATGAGAAGAGTGGTGGAATTGTTGCAAGAAGTGGCAGAGGAGCATCCCCATATTGCTTTGTCACCCTATTACTCTGAAGATGCCCCAGATCATGGAAGAGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

387

Amino Acids

42.88

Weight (kDa)

8.3

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 7 - 151 6.7e-24 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 646
AciI CCGC 4 cut(s) 311, 644, 646, 797
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 3 cut(s) 182, 501, 791
AcuI CTGAAG 1 cut(s) 1152
AfaI GTAC 2 cut(s) 599, 996
AfiI CCNNNNNNNGG 5 cut(s) 217, 650, 741, 893, 1148
AgsI TTSAA 4 cut(s) 181, 250, 500, 814
AhlI ACTAGT 1 cut(s) 1028
AjnI CCWGG 3 cut(s) 210, 892, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 2 cut(s) 101, 273
AluI AGCT 2 cut(s) 101, 273
AlwNI CAGNNNCTG 1 cut(s) 520
AoxI GGCC 3 cut(s) 213, 294, 581
ApeKI GCWGC 4 cut(s) 56, 388, 719, 1023
ApoI RAATTY 3 cut(s) 182, 501, 791
AspS9I GGNCC 6 cut(s) 404, 581, 697, 919, 949, 1003
AsuHPI GGTGA 5 cut(s) 20, 149, 859, 922, 1110
AvaII GGWCC 5 cut(s) 404, 697, 919, 949, 1003
BaeGI GKGCMC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 215
BauI CACGAG 1 cut(s) 157
BbvI GCAGC 4 cut(s) 68, 375, 731, 1010
BccI CCATC 3 cut(s) 592, 701, 1060
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 3 cut(s) 212, 894, 908
BcuI ACTAGT 1 cut(s) 1028
BfaI CTAG 2 cut(s) 768, 1029
BfmI CTRYAG 1 cut(s) 96
BglII AGATCT 1 cut(s) 362
BisI GCNGC 5 cut(s) 57, 312, 389, 720, 1024
BlsI GCNGC 5 cut(s) 58, 313, 390, 721, 1025
Bme1390I CCNGG 3 cut(s) 212, 894, 908
Bme18I GGWCC 5 cut(s) 404, 697, 919, 949, 1003
BmgT120I GGNCC 6 cut(s) 404, 581, 697, 919, 949, 1003
BmiI GGNNCC 3 cut(s) 76, 891, 920
BmrFI CCNGG 3 cut(s) 212, 894, 908
BmrI ACTGGG 2 cut(s) 530, 876
BmsI GCATC 5 cut(s) 735, 840, 943, 1108, 1126
BmuI ACTGGG 2 cut(s) 530, 876
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 216, 644, 735
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 650, 741, 893, 1148
Bse1I ACTGG 6 cut(s) 120, 469, 525, 871, 878, 1040
Bse3DI GCAATG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 3 cut(s) 212, 894, 908
BseDI CCNNGG 3 cut(s) 216, 644, 735
BseGI GGATG 5 cut(s) 41, 363, 750, 1052, 1099
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 5 cut(s) 217, 650, 741, 893, 1148
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 6 cut(s) 120, 469, 525, 871, 878, 1040
BseRI GAGGAG 1 cut(s) 1109
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 4 cut(s) 68, 375, 731, 1010
BsgI GTGCAG 1 cut(s) 1009
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 3 cut(s) 215, 296, 583
BsiSI CCGG 1 cut(s) 887
BslI CCNNNNNNNGG 5 cut(s) 217, 650, 741, 893, 1148
BsnI GGCC 3 cut(s) 215, 296, 583
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 5 cut(s) 36, 233, 337, 362, 1144
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 4 cut(s) 311, 644, 646, 797
BspANI GGCC 3 cut(s) 215, 296, 583
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 1 cut(s) 646
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 76, 891, 920
BsrDI GCAATG 1 cut(s) 164
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 6 cut(s) 120, 469, 525, 871, 878, 1040
BssECI CCNNGG 3 cut(s) 216, 644, 735
BssMI GATC 5 cut(s) 36, 233, 337, 362, 1144
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 216, 735
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 212, 894, 908
Bst6I CTCTTC 5 cut(s) 121, 649, 1041, 1057, 1147
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 6 cut(s) 79, 108, 223, 298, 379, 801
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 2 cut(s) 216, 644
BstENI CCTNNNNNAGG 1 cut(s) 739
BstF5I GGATG 5 cut(s) 41, 363, 750, 1052, 1099
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 5 cut(s) 39, 236, 340, 365, 1147
BstMBI GATC 5 cut(s) 36, 233, 337, 362, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
BstNI CCWGG 3 cut(s) 212, 894, 908
BstNSI RCATGY 2 cut(s) 204, 225
BstSCI CCNGG 3 cut(s) 210, 892, 906
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 4 cut(s) 68, 375, 731, 1010
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 3 cut(s) 304, 353, 707
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 3 cut(s) 215, 296, 583
BtgI CCRYGG 2 cut(s) 216, 644
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 5 cut(s) 41, 363, 750, 1052, 1099
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 6 cut(s) 79, 108, 223, 298, 379, 801
CaiI CAGNNNCTG 1 cut(s) 520
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 6 cut(s) 404, 581, 697, 919, 949, 1003
Cfr42I CCGCGG 1 cut(s) 647
CsiI ACCWGGT 1 cut(s) 906
Csp6I GTAC 2 cut(s) 598, 995
CviAII CATG 9 cut(s) 201, 217, 222, 452, 557, 751, 953, 1057, 1148
CviQI GTAC 2 cut(s) 598, 995
DdeI CTNAG 1 cut(s) 537
DpnI GATC 5 cut(s) 38, 235, 339, 364, 1146
DpnII GATC 5 cut(s) 36, 233, 337, 362, 1144
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 5 cut(s) 121, 649, 1041, 1057, 1147
EarI CTCTTC 5 cut(s) 121, 649, 1041, 1057, 1147
Eco130I CCWWGG 2 cut(s) 216, 735
Eco47I GGWCC 5 cut(s) 404, 697, 919, 949, 1003
Eco57I CTGAAG 1 cut(s) 1152
EcoNI CCTNNNNNAGG 1 cut(s) 739
EcoO109I RGGNCCY 1 cut(s) 1003
EcoRII CCWGG 3 cut(s) 210, 892, 906
EcoT14I CCWWGG 2 cut(s) 216, 735
ErhI CCWWGG 2 cut(s) 216, 735
FaeI CATG 9 cut(s) 204, 220, 225, 455, 560, 754, 956, 1060, 1151
FalI AAGNNNNNCTT 1 cut(s) 1144
FatI CATG 9 cut(s) 200, 216, 221, 451, 556, 750, 952, 1056, 1147
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 57, 312, 389, 720, 1024
FokI GGATG 5 cut(s) 28, 370, 757, 1039, 1086
Fsp4HI GCNGC 5 cut(s) 57, 312, 389, 720, 1024
FspBI CTAG 2 cut(s) 768, 1029
GluI GCNGC 5 cut(s) 57, 312, 389, 720, 1024
HaeIII GGCC 3 cut(s) 215, 296, 583
HapII CCGG 1 cut(s) 887
Hin1II CATG 9 cut(s) 204, 220, 225, 455, 560, 754, 956, 1060, 1151
HincII GTYRAC 3 cut(s) 470, 612, 730
HindII GTYRAC 3 cut(s) 470, 612, 730
HinfI GANTC 4 cut(s) 160, 489, 533, 974
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 1 cut(s) 887
HphI GGTGA 5 cut(s) 20, 149, 859, 922, 1110
Hpy166II GTNNAC 7 cut(s) 140, 470, 598, 612, 661, 730, 997
Hpy188I TCNGA 4 cut(s) 516, 538, 939, 1132
Hpy188III TCNNGA 2 cut(s) 276, 557
Hpy8I GTNNAC 7 cut(s) 140, 470, 598, 612, 661, 730, 997
HpyAV CCTTC 2 cut(s) 187, 563
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 8 cut(s) 4, 110, 632, 748, 788, 934, 1026, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 9 cut(s) 204, 220, 225, 455, 560, 754, 956, 1060, 1151
KspAI GTTAAC 1 cut(s) 612
KspI CCGCGG 1 cut(s) 647
Kzo9I GATC 5 cut(s) 36, 233, 337, 362, 1144
LmnI GCTCC 2 cut(s) 74, 1096
Lsp1109I GCAGC 4 cut(s) 68, 375, 731, 1010
LweI GCATC 5 cut(s) 735, 840, 943, 1108, 1126
MabI ACCWGGT 1 cut(s) 906
MaeI CTAG 2 cut(s) 768, 1029
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 5 cut(s) 122, 152, 862, 980, 1116
MalI GATC 5 cut(s) 38, 235, 339, 364, 1146
MboI GATC 5 cut(s) 36, 233, 337, 362, 1144
MboII GAAGA 9 cut(s) 108, 572, 649, 666, 1001, 1028, 1074, 1145, 1164
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 3 cut(s) 169, 498, 542
MnlI CCTC 9 cut(s) 203, 301, 436, 458, 572, 644, 735, 1016, 1087
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 4 cut(s) 83, 291, 611, 882
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 3 cut(s) 212, 894, 908
MvaI CCWGG 3 cut(s) 212, 894, 908
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
NcoI CCATGG 1 cut(s) 216
NdeII GATC 5 cut(s) 36, 233, 337, 362, 1144
NlaIII CATG 9 cut(s) 204, 220, 225, 455, 560, 754, 956, 1060, 1151
NlaIV GGNNCC 3 cut(s) 76, 891, 920
NmuCI GTSAC 1 cut(s) 1116
NspI RCATGY 2 cut(s) 204, 225
PaeI GCATGC 1 cut(s) 225
PagI TCATGA 1 cut(s) 556
PfeI GAWTC 1 cut(s) 974
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 5 cut(s) 58, 313, 390, 721, 1025
PleI GAGTC 3 cut(s) 168, 497, 541
PpsI GAGTC 3 cut(s) 168, 497, 541
PpuMI RGGWCCY 1 cut(s) 1003
Psp5II RGGWCCY 1 cut(s) 1003
Psp6I CCWGG 3 cut(s) 210, 892, 906
PspGI CCWGG 3 cut(s) 210, 892, 906
PspN4I GGNNCC 3 cut(s) 76, 891, 920
PspPI GGNCC 6 cut(s) 404, 581, 697, 919, 949, 1003
PspPPI RGGWCCY 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 2 cut(s) 599, 996
RsaNI GTAC 2 cut(s) 598, 995
SacII CCGCGG 1 cut(s) 647
SalI GTCGAC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 83, 291, 611, 882
SatI GCNGC 5 cut(s) 57, 312, 389, 720, 1024
Sau3AI GATC 5 cut(s) 36, 233, 337, 362, 1144
Sau96I GGNCC 6 cut(s) 404, 581, 697, 919, 949, 1003
SchI GAGTC 3 cut(s) 169, 498, 542
ScrFI CCNGG 3 cut(s) 212, 894, 908
SduI GDGCHC 1 cut(s) 553
SexAI ACCWGGT 1 cut(s) 906
SfaNI GCATC 5 cut(s) 735, 840, 943, 1108, 1126
SfcI CTRYAG 1 cut(s) 96
Sfr303I CCGCGG 1 cut(s) 647
SgrBI CCGCGG 1 cut(s) 647
SinI GGWCC 5 cut(s) 404, 697, 919, 949, 1003
SpeI ACTAGT 1 cut(s) 1028
SphI GCATGC 1 cut(s) 225
SsiI CCGC 4 cut(s) 311, 644, 646, 797
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 768, 1029
StyD4I CCNGG 3 cut(s) 210, 892, 906
StyI CCWWGG 2 cut(s) 216, 735
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 232, 469, 1048
TaqII GACCGA 1 cut(s) 392
TatI WGTACW 2 cut(s) 597, 994
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 4 cut(s) 83, 291, 611, 882
Tru9I TTAA 4 cut(s) 83, 291, 611, 882
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 1 cut(s) 1116
TseI GCWGC 4 cut(s) 56, 388, 719, 1023
Tsp45I GTSAC 1 cut(s) 1116
TspDTI ATGAA 5 cut(s) 470, 545, 573, 767, 776
TspGWI ACGGA 1 cut(s) 911
TspRI CASTG 1 cut(s) 639
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 1 cut(s) 1148
VpaK11BI GGWCC 5 cut(s) 404, 697, 919, 949, 1003
XagI CCTNNNNNAGG 1 cut(s) 739
XapI RAATTY 3 cut(s) 182, 501, 791
XceI RCATGY 2 cut(s) 204, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 2 cut(s) 768, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.