Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006361.1

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Forward (+)

96523 .. 97343

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaacgtggtggcaagcaaaggagccgccaatggcagtcggaccgttttgataacgggggtgagcaaaggcctaggccgagccctcgccgttgagatggccaagagaggccacaccgtaatcggctgctcccgttctcaggataagctcacctccctccaaaccgaactctccgacaagcacctcttcctcagcgccgacgtgagctcgaatagcagcgtccaagagctggctcgggttgtgatggagaagaagggagtcccggatatcatagtaaacaatgccggagtcatcaacaacaacaacaagctctgggaggttccggccgaggagttcgacagcgtcgtcgacaccaatgtcaagggggtcgccaacgtgttgcgccacttcattcctctgatgctcaagagggatcccgctccggccaccggaatcatagtcaacatgtcttccggctggggcagatccggtgccgcacacgtggccccttactgtgcctccaaatgggccgtggagggtttgacccggtcggtggccaaggagttgccaaaggacatggccactgtggctctcaatcccggggttatacacactgatatgcttgtttcctgctttgggccgcagaatatggatagttacccggagccccgggtttgggccgtcaaggctgctacgatgatattgcatcttacaccagctgacaatggtgcttctctcactgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

241

Amino Acids

25.58

Weight (kDa)

8.78

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 202	5.4e-46	short chain dehydrogenase
KR	PF08659	15 - 180	3.9e-10	KR domain
Epimerase	PF01370	16 - 181	6.4e-06	NAD dependent epimerase/dehydratase family
adh_short_C2	PF13561	20 - 206	2.8e-34	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	344, 356
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	4 cut(s)	27, 417, 474, 620
AclWI	GGATC	3 cut(s)	407, 420, 459
AcoI	YGGCCR	5 cut(s)	99, 324, 423, 534, 558
AcvI	CACGTG	1 cut(s)	481
AfiI	CCNNNNNNNGG	8 cut(s)	139, 229, 428, 504, 532, 615, 654, 655
AflIII	ACRYGT	3 cut(s)	375, 444, 478
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	5 cut(s)	148, 207, 229, 310, 698
AluI	AGCT	5 cut(s)	148, 207, 229, 310, 698
Alw21I	GWGCWC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	407, 420, 459
Ama87I	CYCGRG	3 cut(s)	234, 578, 648
ApeKI	GCWGC	3 cut(s)	126, 216, 668
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	197, 384
AspS9I	GGNCC	5 cut(s)	42, 484, 507, 617, 657
AsuC2I	CCSGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
AsuHPI	GGTGA	2 cut(s)	73, 142
AvaI	CYCGRG	3 cut(s)	234, 578, 648
AvaII	GGWCC	1 cut(s)	42
AvrII	CCTAGG	1 cut(s)	73
BalI	TGGCCA	3 cut(s)	101, 536, 560
BamHI	GGATCC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	3 cut(s)	85, 209, 648
BbrPI	CACGTG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	113, 228, 655
BccI	CCATC	2 cut(s)	91, 238
BceAI	ACGGC	3 cut(s)	74, 494, 644
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BcnI	CCSGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	198
BglI	GCCNNNNNGGC	2 cut(s)	566, 665
BisI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	6 cut(s)	28, 128, 218, 475, 621, 670
Bme1390I	CCNGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	3 cut(s)	234, 578, 648
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	5 cut(s)	42, 484, 507, 617, 657
BmiI	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
BmrFI	CCNGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
BmsI	GCATC	2 cut(s)	390, 694
BpiI	GAAGAC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
BsaAI	YACGTR	1 cut(s)	481
BsaJI	CCNNGG	8 cut(s)	73, 327, 510, 537, 578, 579, 647, 648
BsaWI	WCCGGW	2 cut(s)	428, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	8 cut(s)	139, 229, 428, 504, 532, 615, 654, 655
BseDI	CCNNGG	8 cut(s)	73, 327, 510, 537, 578, 579, 647, 648
BseLI	CCNNNNNNNGG	8 cut(s)	139, 229, 428, 504, 532, 615, 654, 655
BseMII	CTCAG	2 cut(s)	152, 205
BseRI	GAGGAG	1 cut(s)	344
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	113, 228, 655
BseYI	CCCAGC	1 cut(s)	456
Bsh1285I	CGRYCG	2 cut(s)	327, 530
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	2 cut(s)	327, 530
BsiHKAI	GWGCWC	1 cut(s)	209
BsiHKCI	CYCGRG	3 cut(s)	234, 578, 648
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	8 cut(s)	139, 229, 428, 504, 532, 615, 654, 655
BsmFI	GGGAC	1 cut(s)	245
BsoBI	CYCGRG	3 cut(s)	234, 578, 648
Bsp1286I	GDGCHC	3 cut(s)	85, 209, 648
Bsp143I	GATC	2 cut(s)	412, 464
BspACI	CCGC	4 cut(s)	27, 417, 474, 620
BspCNI	CTCAG	2 cut(s)	151, 204
BspLI	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
BspPI	GGATC	3 cut(s)	407, 420, 459
BspT107I	GGYRCC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	8 cut(s)	73, 327, 510, 537, 578, 579, 647, 648
BssMI	GATC	2 cut(s)	412, 464
BssT1I	CCWWGG	2 cut(s)	73, 537
Bst4CI	ACNGT	5 cut(s)	46, 118, 494, 565, 721
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	16, 231
BstDEI	CTNAG	2 cut(s)	138, 191
BstDSI	CCRYGG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	197, 384
BstKTI	GATC	2 cut(s)	415, 467
BstMBI	GATC	2 cut(s)	412, 464
BstMCI	CGRYCG	2 cut(s)	327, 530
BstMWI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	7 cut(s)	261, 524, 577, 578, 639, 647, 648
BstV1I	GCAGC	3 cut(s)	113, 228, 655
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	412, 464
BstYI	RGATCY	2 cut(s)	412, 464
BstZI	CGGCCG	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	561, 591, 717
Cac8I	GCNNGC	2 cut(s)	16, 231
CfoI	GCGC	2 cut(s)	197, 384
Cfr13I	GGNCC	5 cut(s)	42, 484, 507, 617, 657
Cfr9I	CCCGGG	2 cut(s)	578, 648
CpoI	CGGWCCG	1 cut(s)	42
CseI	GACGC	2 cut(s)	208, 331
CspI	CGGWCCG	1 cut(s)	42
CviAII	CATG	2 cut(s)	445, 556
DdeI	CTNAG	2 cut(s)	138, 191
DpnI	GATC	2 cut(s)	414, 466
DpnII	GATC	2 cut(s)	412, 464
DrdI	GACNNNNNNGTC	2 cut(s)	344, 356
DseDI	GACNNNNNNGTC	2 cut(s)	344, 356
EaeI	YGGCCR	5 cut(s)	99, 324, 423, 534, 558
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	207
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	73, 537
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	3 cut(s)	85, 209, 648
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	207
Eco72I	CACGTG	1 cut(s)	481
Eco88I	CYCGRG	3 cut(s)	234, 578, 648
EcoICRI	GAGCTC	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	73, 537
EcoT38I	GRGCYC	3 cut(s)	85, 209, 648
ErhI	CCWWGG	2 cut(s)	73, 537
FaeI	CATG	2 cut(s)	448, 559
FaiI	YATR	7 cut(s)	272, 437, 446, 557, 587, 599, 629
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	444, 555
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
FriOI	GRGCYC	3 cut(s)	85, 209, 648
Fsp4HI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	2 cut(s)	196, 383
GluI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
GsaI	CCCAGC	1 cut(s)	460
HaeII	RGCGCY	1 cut(s)	198
HgaI	GACGC	2 cut(s)	208, 331
HhaI	GCGC	2 cut(s)	197, 384
Hin1II	CATG	2 cut(s)	448, 559
Hin6I	GCGC	2 cut(s)	195, 382
HinP1I	GCGC	2 cut(s)	195, 382
HincII	GTYRAC	2 cut(s)	349, 442
HindII	GTYRAC	2 cut(s)	349, 442
HinfI	GANTC	3 cut(s)	258, 288, 432
HphI	GGTGA	2 cut(s)	73, 142
Hpy166II	GTNNAC	3 cut(s)	277, 349, 442
Hpy188I	TCNGA	4 cut(s)	42, 175, 399, 725
Hpy188III	TCNNGA	2 cut(s)	140, 406
Hpy8I	GTNNAC	3 cut(s)	277, 349, 442
Hpy99I	CGWCG	3 cut(s)	203, 347, 350
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	5 cut(s)	46, 118, 494, 565, 721
HpyCH4IV	ACGT	4 cut(s)	6, 201, 375, 480
HpyCH4V	TGCA	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
HpyF3I	CTNAG	2 cut(s)	138, 191
HpySE526I	ACGT	4 cut(s)	6, 201, 375, 480
Hsp92II	CATG	2 cut(s)	448, 559
HspAI	GCGC	2 cut(s)	195, 382
Kzo9I	GATC	2 cut(s)	412, 464
LmnI	GCTCC	4 cut(s)	23, 134, 424, 643
Lsp1109I	GCAGC	3 cut(s)	113, 228, 655
LweI	GCATC	2 cut(s)	390, 694
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	4 cut(s)	6, 201, 375, 480
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	2 cut(s)	414, 466
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	2 cut(s)	412, 464
MboII	GAAGA	3 cut(s)	178, 262, 441
MflI	RGATCY	2 cut(s)	412, 464
MhlI	GDGCHC	3 cut(s)	85, 209, 648
MlsI	TGGCCA	3 cut(s)	101, 536, 560
MluNI	TGGCCA	3 cut(s)	101, 536, 560
MlyI	GAGTC	2 cut(s)	267, 297
MmeI	TCCRAC	2 cut(s)	20, 198
Mox20I	TGGCCA	3 cut(s)	101, 536, 560
MscI	TGGCCA	3 cut(s)	101, 536, 560
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	3 cut(s)	101, 536, 560
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
MwoI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
NciI	CCSGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
NdeII	GATC	2 cut(s)	412, 464
NlaIII	CATG	2 cut(s)	448, 559
NlaIV	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
NmeAIII	GCCGAG	2 cut(s)	104, 352
NspI	RCATGY	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	432
PflFI	GACNNNGTC	2 cut(s)	341, 526
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	28, 128, 218, 475, 621, 670
PleI	GAGTC	2 cut(s)	266, 296
PmaCI	CACGTG	1 cut(s)	481
PmlI	CACGTG	1 cut(s)	481
PpsI	GAGTC	2 cut(s)	266, 296
Ppu21I	YACGTR	1 cut(s)	481
PscI	ACATGT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	456
PspN4I	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
PspPI	GGNCC	5 cut(s)	42, 484, 507, 617, 657
PsuI	RGATCY	2 cut(s)	412, 464
PsyI	GACNNNGTC	2 cut(s)	341, 526
PvuII	CAGCTG	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	596
Rsr2I	CGGWCCG	1 cut(s)	42
RsrII	CGGWCCG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	347
SatI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
Sau3AI	GATC	2 cut(s)	412, 464
Sau96I	GGNCC	5 cut(s)	42, 484, 507, 617, 657
SchI	GAGTC	2 cut(s)	267, 297
ScrFI	CCNGG	7 cut(s)	263, 526, 579, 580, 641, 649, 650
SduI	GDGCHC	3 cut(s)	85, 209, 648
SfaNI	GCATC	2 cut(s)	390, 694
SinI	GGWCC	1 cut(s)	42
SmaI	CCCGGG	2 cut(s)	580, 650
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	4 cut(s)	27, 417, 474, 620
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	7 cut(s)	261, 524, 577, 578, 639, 647, 648
StyI	CCWWGG	2 cut(s)	73, 537
TaaI	ACNGT	5 cut(s)	46, 118, 494, 565, 721
TaiI	ACGT	4 cut(s)	9, 204, 378, 483
TaqI	TCGA	3 cut(s)	209, 336, 348
TauI	GCSGC	3 cut(s)	29, 476, 622
TfiI	GAWTC	1 cut(s)	432
TscAI	CASTG	3 cut(s)	568, 598, 724
TseI	GCWGC	3 cut(s)	126, 216, 668
TspDTI	ATGAA	2 cut(s)	17, 379
TspMI	CCCGGG	2 cut(s)	578, 648
TspRI	CASTG	3 cut(s)	568, 598, 724
Tth111I	GACNNNGTC	2 cut(s)	341, 526
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	42
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmaI	CCCGGG	2 cut(s)	578, 648
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.