Rmu_sc0006363.1_g000001

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006363.1
OG0006331
Physical Location & Seq
Reverse (-)
1447 .. 9729
8283 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
atgtacgagaaccacgaaatcatgtacgcgcaagacaccctgcaccttgagcaagagtcatgttcgggtaccacgagtcatcgggtacatgggtacatgcaggacacccctcaccctcaacctcaccccgcacctcgatcaagggtcatgtacgggtaccatgagccagcgggaggttgttgttcccgtaaacccattttgcattctactacgatctcagcaaatcgaattcagacccgttctcactcgtacgctctgaattccggtaatggaataggattccggcaactgcgttttagtccgaaggcggtttccgatgatgggtccaacggaagtgatggtaattctggtggcggaaacaatcatggcagaggtggaggtggaggtggtggcaagggtgatgatagattccggcaactgcgttttagtccgaaggcggtttccgatgatgggtccaacggaagtgatggtaattctggtggcggaaacaatcatggcagaggtggaggtggaggtggtggcaaaggtgatgatagtaattggtctttcctctcatggtatttggatcttcttgcaaagtatcctgcgtccataaaagctctgacatctgcatttttaaccctcattggagatgttatctgccagcttgttattgatcaagttccatgtcttgacgtgaaaagaacattcttatttaccttgctgggtctggtgttagtaggtccgacgctgcatttctggtatttgtatctaagcaaactggtcacgttgcctggagcatcaggtgcattcatgagccttctacttgatcagtttcttttttctcctatatttattggagttttcttatcggcattgatgacactggagggaagaccttcccaaattgtacccaagctacaacaggagtggttttctgctgtgcttgctaattggcaactgtggatacctttccaatttcttaactttcggtttgtaccacagcaattccaggttcttactgctaatgttattgctttggcatggaatgttatcctctcgtttaaagctcacaaagaggacaagtcagtttgggttgccattcgaaacccagatgttcgagctgccaccacctattcactctgccccattgttgaaattggttgttacacctcatatctagatttacccgtctacttgtcatttagacgattttttacccggcccaataagatctcagcagtccgggcacctgacaatgcaccactggtcgggtttggaccgcctcttcctcatgagttatgtggtggtgatttgggtagatttgcaccggagaaggagtttagaagcaatttccaactcaacaactcgcatgggccgatgtcggaactttcaattccagctctctcctgtgagaaacgaattaggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

470

Amino Acids

51.52

Weight (kDa)

8.77

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 288 - 347 3.3e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 68, 156
AccB1I GGYRCC 3 cut(s) 68, 156, 1228
AccI GTMKAC 1 cut(s) 1173
AccII CGCG 1 cut(s) 29
AciI CCGC 7 cut(s) 129, 170, 308, 354, 437, 483, 1262
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 2 cut(s) 228, 259
AfiI CCNNNNNNNGG 4 cut(s) 173, 321, 450, 1250
AgsI TTSAA 2 cut(s) 1136, 1374
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 2 cut(s) 772, 990
AluBI AGCT 6 cut(s) 599, 646, 898, 1049, 1103, 1382
AluI AGCT 6 cut(s) 599, 646, 898, 1049, 1103, 1382
AlwI GGATC 1 cut(s) 573
AoxI GGCC 2 cut(s) 1202, 1355
ApeKI GCWGC 2 cut(s) 730, 1103
ApoI RAATTY 2 cut(s) 228, 259
Asp700I GAANNNNTTC 1 cut(s) 877
Asp718I GGTACC 2 cut(s) 68, 156
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 6 cut(s) 324, 453, 722, 1203, 1259, 1355
AsuC2I CCSGG 2 cut(s) 1201, 1226
AsuHPI GGTGA 5 cut(s) 104, 116, 410, 539, 1301
AsuII TTCGAA 1 cut(s) 1084
AvaII GGWCC 4 cut(s) 324, 453, 722, 1259
BaeGI GKGCMC 1 cut(s) 1231
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BanI GGYRCC 3 cut(s) 68, 156, 1228
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 880
BbvI GCAGC 2 cut(s) 717, 1090
BccI CCATC 4 cut(s) 314, 332, 443, 461
BciT130I CCWGG 2 cut(s) 774, 992
BciVI GTATCC 2 cut(s) 591, 939
BclI TGATCA 2 cut(s) 655, 808
BcnI CCSGG 2 cut(s) 1201, 1226
BfaI CTAG 1 cut(s) 1160
BfuI GTATCC 2 cut(s) 591, 939
BglII AGATCT 1 cut(s) 1212
BisI GCNGC 2 cut(s) 731, 1104
BlsI GCNGC 2 cut(s) 732, 1105
Bme1390I CCNGG 4 cut(s) 774, 992, 1201, 1226
Bme18I GGWCC 4 cut(s) 324, 453, 722, 1259
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 6 cut(s) 324, 453, 722, 1203, 1259, 1355
BmiI GGNNCC 5 cut(s) 70, 158, 325, 454, 1230
BmrFI CCNGG 4 cut(s) 774, 992, 1201, 1226
BmsI GCATC 1 cut(s) 788
BpiI GAAGAC 1 cut(s) 880
BpmI CTGGAG 2 cut(s) 795, 887
Bpu14I TTCGAA 1 cut(s) 1084
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 1201, 1226
BsaWI WCCGGW 2 cut(s) 263, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 1304, 1334
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 321, 450, 1250
Bse1I ACTGG 3 cut(s) 765, 870, 1251
BseBI CCWGG 2 cut(s) 774, 992
BseLI CCNNNNNNNGG 4 cut(s) 173, 321, 450, 1250
BseMII CTCAG 2 cut(s) 231, 1230
BseNI ACTGG 3 cut(s) 765, 870, 1251
BseSI GKGCMC 1 cut(s) 1231
BseXI GCAGC 2 cut(s) 717, 1090
BseYI CCCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 1204, 1357
BshNI GGYRCC 3 cut(s) 68, 156, 1228
BsiSI CCGG 6 cut(s) 264, 283, 412, 1201, 1225, 1310
BsiWI CGTACG 1 cut(s) 249
BslI CCNNNNNNNGG 4 cut(s) 173, 321, 450, 1250
BsmI GAATGC 2 cut(s) 202, 788
BsnI GGCC 2 cut(s) 1204, 1357
Bsp119I TTCGAA 1 cut(s) 1084
Bsp1286I GDGCHC 1 cut(s) 1231
Bsp143I GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
BspACI CCGC 7 cut(s) 129, 170, 308, 354, 437, 483, 1262
BspANI GGCC 2 cut(s) 1204, 1357
BspCNI CTCAG 2 cut(s) 230, 1229
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 2 cut(s) 792, 1273
BspLI GGNNCC 5 cut(s) 70, 158, 325, 454, 1230
BspPI GGATC 1 cut(s) 573
BspT104I TTCGAA 1 cut(s) 1084
BspT107I GGYRCC 3 cut(s) 68, 156, 1228
BsrI ACTGG 3 cut(s) 765, 870, 1251
BssMI GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 774, 992
Bst4CI ACNGT 1 cut(s) 942
Bst6I CTCTTC 1 cut(s) 1272
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBI TTCGAA 1 cut(s) 1084
BstC8I GCNNGC 3 cut(s) 168, 644, 927
BstDEI CTNAG 3 cut(s) 217, 752, 1216
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 6 cut(s) 140, 216, 568, 658, 811, 1215
BstMBI GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 49, 785, 926, 1226
BstNI CCWGG 2 cut(s) 774, 992
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 772, 990, 1199, 1224
BstSLI GKGCMC 1 cut(s) 1231
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 717, 1090
BstV2I GAAGAC 1 cut(s) 880
BstX2I RGATCY 2 cut(s) 565, 1212
BstYI RGATCY 2 cut(s) 565, 1212
BsuI GTATCC 2 cut(s) 591, 939
BsuRI GGCC 2 cut(s) 1204, 1357
BtrI CACGTC 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 863, 1244
Cac8I GCNNGC 3 cut(s) 168, 644, 927
CciI TCATGA 2 cut(s) 792, 1273
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 6 cut(s) 324, 453, 722, 1203, 1259, 1355
CseI GACGC 2 cut(s) 576, 736
CspCI CAANNNNNGTGG 2 cut(s) 890, 925
DdeI CTNAG 3 cut(s) 217, 752, 1216
DpnI GATC 6 cut(s) 139, 215, 567, 657, 810, 1214
DpnII GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
DraI TTTAAA 1 cut(s) 1045
Eam1104I CTCTTC 1 cut(s) 1272
EarI CTCTTC 1 cut(s) 1272
EciI GGCGGA 2 cut(s) 369, 498
Eco47I GGWCC 4 cut(s) 324, 453, 722, 1259
EcoRI GAATTC 2 cut(s) 228, 259
EcoRII CCWGG 2 cut(s) 772, 990
FauI CCCGC 2 cut(s) 136, 163
FbaI TGATCA 2 cut(s) 655, 808
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 2 cut(s) 731, 1104
Fsp4HI GCNGC 2 cut(s) 731, 1104
FspBI CTAG 1 cut(s) 1160
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 731, 1104
GsaI CCCAGC 1 cut(s) 707
GsuI CTGGAG 2 cut(s) 795, 887
HaeIII GGCC 2 cut(s) 1204, 1357
HapII CCGG 6 cut(s) 264, 283, 412, 1201, 1225, 1310
HgaI GACGC 2 cut(s) 576, 736
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 4 cut(s) 56, 76, 279, 408
HpaII CCGG 6 cut(s) 264, 283, 412, 1201, 1225, 1310
HphI GGTGA 5 cut(s) 104, 116, 410, 539, 1301
Hpy166II GTNNAC 2 cut(s) 191, 1174
Hpy188I TCNGA 9 cut(s) 234, 258, 303, 316, 432, 445, 603, 726, 1366
Hpy188III TCNNGA 4 cut(s) 671, 793, 1160, 1274
Hpy8I GTNNAC 2 cut(s) 191, 1174
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 5 cut(s) 298, 427, 809, 888, 1309
HpyCH4III ACNGT 1 cut(s) 942
HpyCH4IV ACGT 2 cut(s) 675, 767
HpyCH4V TGCA 9 cut(s) 43, 100, 202, 575, 611, 733, 788, 1241, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 785, 926, 1226
HpyF3I CTNAG 3 cut(s) 217, 752, 1216
HpySE526I ACGT 2 cut(s) 675, 767
HspAI GCGC 1 cut(s) 29
KpnI GGTACC 2 cut(s) 72, 160
Ksp22I TGATCA 2 cut(s) 655, 808
Kzo9I GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
LmnI GCTCC 1 cut(s) 776
Lsp1109I GCAGC 2 cut(s) 717, 1090
LweI GCATC 1 cut(s) 788
MaeI CTAG 1 cut(s) 1160
MaeII ACGT 2 cut(s) 675, 767
MaeIII GTNAC 2 cut(s) 763, 1145
MalI GATC 6 cut(s) 139, 215, 567, 657, 810, 1214
MboI GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
MboII GAAGA 3 cut(s) 560, 885, 1259
MflI RGATCY 2 cut(s) 565, 1212
MhlI GDGCHC 1 cut(s) 1231
MlyI GAGTC 2 cut(s) 65, 85
MmeI TCCRAC 5 cut(s) 351, 480, 749, 1344, 1360
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 3 cut(s) 617, 963, 1044
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 6 cut(s) 264, 283, 412, 1201, 1225, 1310
MspR9I CCNGG 4 cut(s) 774, 992, 1201, 1226
Mva1269I GAATGC 2 cut(s) 202, 788
MvaI CCWGG 2 cut(s) 774, 992
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 49, 785, 926, 1226
NciI CCSGG 2 cut(s) 1201, 1226
NdeII GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
NlaIV GGNNCC 5 cut(s) 70, 158, 325, 454, 1230
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 1 cut(s) 100
NspV TTCGAA 1 cut(s) 1084
PagI TCATGA 2 cut(s) 792, 1273
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 71, 1355
PctI GAATGC 2 cut(s) 202, 788
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 2 cut(s) 279, 408
Pfl23II CGTACG 1 cut(s) 249
PkrI GCNGC 2 cut(s) 732, 1105
PleI GAGTC 2 cut(s) 64, 84
PpsI GAGTC 2 cut(s) 64, 84
Psp6I CCWGG 2 cut(s) 772, 990
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 2 cut(s) 772, 990
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 5 cut(s) 70, 158, 325, 454, 1230
PspPI GGNCC 6 cut(s) 324, 453, 722, 1203, 1259, 1355
PsuI RGATCY 2 cut(s) 565, 1212
SaqAI TTAA 3 cut(s) 617, 963, 1044
SatI GCNGC 2 cut(s) 731, 1104
Sau3AI GATC 6 cut(s) 137, 213, 565, 655, 808, 1212
Sau96I GGNCC 6 cut(s) 324, 453, 722, 1203, 1259, 1355
SchI GAGTC 2 cut(s) 65, 85
ScrFI CCNGG 4 cut(s) 774, 992, 1201, 1226
SduI GDGCHC 1 cut(s) 1231
SfaNI GCATC 1 cut(s) 788
SfuI TTCGAA 1 cut(s) 1084
SinI GGWCC 4 cut(s) 324, 453, 722, 1259
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SsiI CCGC 7 cut(s) 129, 170, 308, 354, 437, 483, 1262
SspMI CTAG 1 cut(s) 1160
StyD4I CCNGG 4 cut(s) 772, 990, 1199, 1224
TaaI ACNGT 1 cut(s) 942
TaiI ACGT 2 cut(s) 678, 770
TaqI TCGA 4 cut(s) 136, 226, 1084, 1099
TfiI GAWTC 2 cut(s) 279, 408
Tru1I TTAA 3 cut(s) 617, 963, 1044
Tru9I TTAA 3 cut(s) 617, 963, 1044
TscAI CASTG 2 cut(s) 870, 1251
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 2 cut(s) 730, 1103
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 1 cut(s) 781
TspGWI ACGGA 2 cut(s) 345, 474
TspRI CASTG 2 cut(s) 870, 1251
VpaK11BI GGWCC 4 cut(s) 324, 453, 722, 1259
XapI RAATTY 2 cut(s) 228, 259
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 1173
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.