Rmu_sc0006473.1_g000005

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006473.1
OG0012147
Physical Location & Seq
Forward (+)
15824 .. 16867
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
atggactataagcccatttctaccacagccacggccaccgccacggccaccatcaatactccagacacagacactgagctcatccccacatcagaccccaaatctggcgcctttaggtccttatccttcaacaacggccctctcaagccccgccacccacttcctccgccgcctcatacggcggttgtgtaccgagaatgtttgaagaaccacgcggccagcatcggcggccacgccctcgacggctgcggtgagttttttcccagccccatttccaacgccgccgaccccacctcgctaaaatgcgccgcctgcggctgccaccgcaacttccaccgccgcgacgcgcctgacgaaccacgcgcgttcactcctccaaaggcccttctcgtcagccctactcctcaccaccgccttcttcttccgccgccagctcagcacagctcaagcccaagcccaagccggagcacgagcccgggcccaagcaccacgttgagcccgcactctccgccgccggtctcgcacgtgccgccctccttcttcggcacaccgtcccagatgctcctcgccctcagctccgccgcgtttatcgcgccaccaccgtcggatgagaaggtccggaatccgacggctgggaagacggggaggaagagatcgaggaccaagttcagccaggagcagaaggacaagatgttctgttttgctgacaaactaggctggaaactgcagaggagcgaagagaagttcgtcgaggatttctgcgacgggattgggattggtcggaacgtttttaaggtttggatgcataacaacaagcatcacatgatgaagaagcagaggttgttgtcgtcggccgggttgatcaatgacggtgacgacggcggtgacgccggcggaggagctagctttgattccactgctgaggagaacaacaacaacaacaatgtgaatgtcattatcgactcccacaatgaaagtagcagagataatcatcaccaccaaaggttttatctttccaacaatgggtcctcttcttcgtcttga

Protein Analysis

347

Amino Acids

37.49

Weight (kDa)

8.8

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 62 - 115 3e-27 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69600 AT5G60480
fragaria_vesca FvH4_4g31350
malus_domestica MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica Prupe.1G274700_v2.0.a1
pyrus_communis pycom13g06480 pycom16g06310
rosa_chinensis RchiOBHm_Chr4g0439861
rosa_laevigata RLG00000006232
rosa_multiflora Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii Rroxscaffold_5G00380760
rosa_rugosa Rorug04G0321800
rosa_samantha Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana Rw4G031870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
AccIII TCCGGA 1 cut(s) 618
AclI AACGTT 1 cut(s) 786
AcoI YGGCCR 5 cut(s) 33, 45, 216, 229, 852
AcvI CACGTG 1 cut(s) 526
AcyI GRCGYC 2 cut(s) 108, 888
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 104, 632, 1023
AgsI TTSAA 2 cut(s) 130, 205
AjnI CCWGG 1 cut(s) 672
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 6 cut(s) 79, 434, 444, 576, 902, 906
AluI AGCT 6 cut(s) 79, 434, 444, 576, 902, 906
Alw21I GWGCWC 2 cut(s) 81, 470
Alw26I GTCTC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 475
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 8 cut(s) 33, 45, 136, 216, 229, 381, 478, 852
ApaI GGGCCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 246, 318
AspLEI GCGC 5 cut(s) 110, 308, 349, 365, 595
AspS9I GGNCC 8 cut(s) 117, 137, 382, 478, 479, 616, 660, 1026
AsuC2I CCSGG 3 cut(s) 476, 477, 856
AsuHPI GGTGA 5 cut(s) 263, 398, 884, 896, 986
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 4 cut(s) 117, 616, 660, 1026
BaeGI GKGCMC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 4 cut(s) 81, 476, 482, 500
BauI CACGAG 1 cut(s) 469
BbrPI CACGTG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 2 cut(s) 81, 470
BbvCI CCTCAGC 2 cut(s) 572, 921
BbvI GCAGC 2 cut(s) 233, 305
BccI CCATC 1 cut(s) 59
BceAI ACGGC 7 cut(s) 48, 60, 151, 195, 259, 645, 895
BciT130I CCWGG 1 cut(s) 674
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 3 cut(s) 476, 477, 856
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 2 cut(s) 713, 903
BfmI CTRYAG 1 cut(s) 725
BfoI RGCGCY 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 435
Bme1390I CCNGG 4 cut(s) 476, 477, 674, 856
Bme18I GGWCC 4 cut(s) 117, 616, 660, 1026
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 8 cut(s) 117, 137, 382, 478, 479, 616, 660, 1026
BmiI GGNNCC 3 cut(s) 109, 480, 1027
BmrFI CCNGG 4 cut(s) 476, 477, 674, 856
BmsI GCATC 4 cut(s) 231, 549, 792, 826
BmtI GCTAGC 1 cut(s) 906
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 2 cut(s) 572, 921
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 128, 430
BpuMI CCSGG 3 cut(s) 476, 477, 856
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 2 cut(s) 108, 888
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 3 cut(s) 30, 42, 475
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 632, 1023
Bse118I RCCGGY 2 cut(s) 514, 890
Bse8I GATNNNNATC 1 cut(s) 990
BseAI TCCGGA 1 cut(s) 618
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 3 cut(s) 30, 42, 475
BseGI GGATG 3 cut(s) 81, 613, 807
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 104, 632, 1023
BseMII CTCAG 4 cut(s) 66, 449, 586, 912
BseRI GAGGAG 6 cut(s) 363, 393, 554, 745, 912, 938
BseSI GKGCMC 1 cut(s) 482
BseX3I CGGCCG 1 cut(s) 852
BseXI GCAGC 2 cut(s) 233, 305
BseYI CCCAGC 2 cut(s) 263, 632
Bsh1236I CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
Bsh1285I CGRYCG 1 cut(s) 855
BshFI GGCC 8 cut(s) 35, 47, 138, 218, 231, 383, 480, 854
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 855
BsiHKAI GWGCWC 2 cut(s) 81, 470
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 6 cut(s) 463, 476, 515, 619, 855, 891
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 3 cut(s) 104, 632, 1023
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 8 cut(s) 35, 47, 138, 218, 231, 383, 480, 854
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 475
Bsp120I GGGCCC 1 cut(s) 478
Bsp1286I GDGCHC 5 cut(s) 81, 470, 476, 482, 500
Bsp13I TCCGGA 1 cut(s) 618
Bsp143I GATC 2 cut(s) 653, 861
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 8 cut(s) 35, 47, 138, 218, 231, 383, 480, 854
BspCNI CTCAG 4 cut(s) 67, 448, 585, 913
BspEI TCCGGA 1 cut(s) 618
BspFNI CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
BspLI GGNNCC 3 cut(s) 109, 480, 1027
BspMAI CTGCAG 1 cut(s) 729
BspOI GCTAGC 1 cut(s) 906
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 523
BsrFI RCCGGY 2 cut(s) 514, 890
BssAI RCCGGY 2 cut(s) 514, 890
BssECI CCNNGG 3 cut(s) 30, 42, 475
BssMI GATC 2 cut(s) 653, 861
BssNI GRCGYC 2 cut(s) 108, 888
BssSI CACGAG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 552, 603, 872
Bst6I CTCTTC 3 cut(s) 644, 732, 1036
BstACI GRCGYC 2 cut(s) 108, 888
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 6 cut(s) 220, 313, 432, 500, 892, 904
BstDEI CTNAG 4 cut(s) 75, 435, 572, 921
BstDSI CCRYGG 2 cut(s) 30, 42
BstF5I GGATG 3 cut(s) 81, 613, 807
BstFNI CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 5 cut(s) 110, 308, 349, 365, 595
BstKTI GATC 2 cut(s) 656, 864
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 2 cut(s) 653, 861
BstMCI CGRYCG 1 cut(s) 855
BstMWI GCNNNNNNNGC 8 cut(s) 228, 312, 324, 436, 508, 520, 529, 590
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 4 cut(s) 474, 475, 672, 854
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
BstV1I GCAGC 2 cut(s) 233, 305
BstV2I GAAGAC 1 cut(s) 644
BstZI CGGCCG 1 cut(s) 852
BsuRI GGCC 8 cut(s) 35, 47, 138, 218, 231, 383, 480, 854
BtgI CCRYGG 2 cut(s) 30, 42
BtsCI GGATG 3 cut(s) 81, 613, 807
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 72, 915
Cac8I GCNNGC 6 cut(s) 220, 313, 432, 500, 892, 904
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 5 cut(s) 110, 308, 349, 365, 595
Cfr10I RCCGGY 2 cut(s) 514, 890
Cfr13I GGNCC 8 cut(s) 117, 137, 382, 478, 479, 616, 660, 1026
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 2 cut(s) 353, 896
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 823
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 4 cut(s) 75, 435, 572, 921
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 655, 863
DpnII GATC 2 cut(s) 653, 861
EaeI YGGCCR 5 cut(s) 33, 45, 216, 229, 852
EagI CGGCCG 1 cut(s) 852
Eam1104I CTCTTC 3 cut(s) 644, 732, 1036
EarI CTCTTC 3 cut(s) 644, 732, 1036
EciI GGCGGA 5 cut(s) 156, 414, 498, 568, 909
Ecl136II GAGCTC 1 cut(s) 79
EclXI CGGCCG 1 cut(s) 852
Eco24I GRGCYC 4 cut(s) 81, 476, 482, 500
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 4 cut(s) 117, 616, 660, 1026
Eco52I CGGCCG 1 cut(s) 852
Eco53kI GAGCTC 1 cut(s) 79
Eco72I CACGTG 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 3 cut(s) 117, 382, 1026
EcoRII CCWGG 1 cut(s) 672
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 4 cut(s) 81, 476, 482, 500
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
FaeI CATG 1 cut(s) 826
FaiI YATR 4 cut(s) 9, 177, 807, 824
FaqI GGGAC 1 cut(s) 538
FatI CATG 1 cut(s) 822
FauI CCCGC 2 cut(s) 158, 507
FbaI TGATCA 1 cut(s) 861
FokI GGATG 3 cut(s) 68, 620, 814
FriOI GRGCYC 4 cut(s) 81, 476, 482, 500
FspBI CTAG 2 cut(s) 713, 903
GlaI GCGC 5 cut(s) 109, 307, 348, 364, 594
GsaI CCCAGC 2 cut(s) 267, 636
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 8 cut(s) 35, 47, 138, 218, 231, 383, 480, 854
HapII CCGG 6 cut(s) 463, 476, 515, 619, 855, 891
HgaI GACGC 2 cut(s) 353, 896
HhaI GCGC 5 cut(s) 110, 308, 349, 365, 595
Hin1I GRCGYC 2 cut(s) 108, 888
Hin1II CATG 1 cut(s) 826
Hin6I GCGC 5 cut(s) 108, 306, 347, 363, 593
HinP1I GCGC 5 cut(s) 108, 306, 347, 363, 593
HinfI GANTC 3 cut(s) 622, 911, 962
HpaII CCGG 6 cut(s) 463, 476, 515, 619, 855, 891
HphI GGTGA 5 cut(s) 263, 398, 884, 896, 986
Hpy166II GTNNAC 2 cut(s) 190, 369
Hpy188I TCNGA 4 cut(s) 94, 607, 627, 783
Hpy188III TCNNGA 3 cut(s) 62, 619, 1041
Hpy8I GTNNAC 2 cut(s) 190, 369
Hpy99I CGWCG 8 cut(s) 245, 347, 607, 631, 752, 767, 853, 881
HpyAV CCTTC 6 cut(s) 136, 395, 425, 547, 607, 676
HpyCH4III ACNGT 3 cut(s) 552, 603, 872
HpyCH4IV ACGT 3 cut(s) 491, 525, 786
HpyCH4V TGCA 2 cut(s) 727, 805
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 312, 324, 436, 508, 520, 529, 590
HpyF3I CTNAG 4 cut(s) 75, 435, 572, 921
HpySE526I ACGT 3 cut(s) 491, 525, 786
Hsp92I GRCGYC 2 cut(s) 108, 888
Hsp92II CATG 1 cut(s) 826
HspAI GCGC 5 cut(s) 108, 306, 347, 363, 593
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 618
KroI GCCGGC 1 cut(s) 890
KroNI GCCGGC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 2 cut(s) 653, 861
LmnI GCTCC 6 cut(s) 465, 567, 581, 676, 732, 899
Lsp1109I GCAGC 2 cut(s) 233, 305
LweI GCATC 4 cut(s) 231, 549, 792, 826
MaeI CTAG 2 cut(s) 713, 903
MaeII ACGT 3 cut(s) 491, 525, 786
MaeIII GTNAC 2 cut(s) 872, 884
MalI GATC 2 cut(s) 655, 863
MboI GATC 2 cut(s) 653, 861
MhlI GDGCHC 5 cut(s) 81, 470, 476, 482, 500
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 956
MmeI TCCRAC 5 cut(s) 300, 585, 650, 761, 1041
Mph1103I ATGCAT 1 cut(s) 807
MreI CGCCGGCG 1 cut(s) 890
MroI TCCGGA 1 cut(s) 618
MroNI GCCGGC 1 cut(s) 890
MseI TTAA 1 cut(s) 792
MspI CCGG 6 cut(s) 463, 476, 515, 619, 855, 891
MspR9I CCNGG 4 cut(s) 476, 477, 674, 856
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 7 cut(s) 215, 342, 347, 363, 365, 584, 593
MwoI GCNNNNNNNGC 8 cut(s) 228, 312, 324, 436, 508, 520, 529, 590
NaeI GCCGGC 1 cut(s) 892
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 3 cut(s) 476, 477, 856
NdeII GATC 2 cut(s) 653, 861
NgoMIV GCCGGC 1 cut(s) 890
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 1 cut(s) 826
NlaIV GGNNCC 3 cut(s) 109, 480, 1027
NmuCI GTSAC 2 cut(s) 872, 884
NsiI ATGCAT 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 892
PfeI GAWTC 2 cut(s) 622, 911
PleI GAGTC 1 cut(s) 956
PluTI GGCGCC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 1 cut(s) 956
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 2 cut(s) 117, 1026
Psp124BI GAGCTC 1 cut(s) 81
Psp1406I AACGTT 1 cut(s) 786
Psp5II RGGWCCY 2 cut(s) 117, 1026
Psp6I CCWGG 1 cut(s) 672
PspCI CACGTG 1 cut(s) 526
PspFI CCCAGC 2 cut(s) 263, 632
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 109, 480, 1027
PspOMI GGGCCC 1 cut(s) 478
PspPI GGNCC 8 cut(s) 117, 137, 382, 478, 479, 616, 660, 1026
PspPPI RGGWCCY 2 cut(s) 117, 1026
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 792
Sau3AI GATC 2 cut(s) 653, 861
Sau96I GGNCC 8 cut(s) 117, 137, 382, 478, 479, 616, 660, 1026
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 4 cut(s) 476, 477, 674, 856
SduI GDGCHC 5 cut(s) 81, 470, 476, 482, 500
SfaNI GCATC 4 cut(s) 231, 549, 792, 826
SfcI CTRYAG 1 cut(s) 725
SfoI GGCGCC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 890
SinI GGWCC 4 cut(s) 117, 616, 660, 1026
SmaI CCCGGG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 143, 445
SmoI CTYRAG 2 cut(s) 143, 445
SrfI GCCCGGGC 1 cut(s) 477
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 2 cut(s) 713, 903
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 4 cut(s) 474, 475, 672, 854
TaaI ACNGT 3 cut(s) 552, 603, 872
TaiI ACGT 3 cut(s) 494, 528, 789
TaqI TCGA 4 cut(s) 240, 656, 750, 960
TfiI GAWTC 2 cut(s) 622, 911
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 2 cut(s) 79, 922
TseFI GTSAC 2 cut(s) 872, 884
TseI GCWGC 2 cut(s) 246, 318
Tsp45I GTSAC 2 cut(s) 872, 884
TspDTI ATGAA 2 cut(s) 842, 987
TspMI CCCGGG 1 cut(s) 475
TspRI CASTG 2 cut(s) 79, 922
VpaK11BI GGWCC 4 cut(s) 117, 616, 660, 1026
XmaI CCCGGG 1 cut(s) 475
XspI CTAG 2 cut(s) 713, 903
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.