Rmu_sc0006514.1_g000033

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006514.1
OG0012904
Physical Location & Seq
Forward (+)
166082 .. 166759
678 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
atgttaaatcgaatcccagaaaacccactattcccagattctctgtgcacgctcatggtctgccagaagaagtttcaccagaaaagactccaaattccggggcttactgctattcttcaacaccgcaaaatcggtccacacaatcctgggctccttgatcacctgaatttcactagtctggaccaattcattgatctccctcaacttcgtgcgcatctaggcactctcgcatcttccctcaagcccgagattcctactctgtatgaggatctggccccccagatttcggctcttgcgactcgttctgcggcaatgcccttctgcatcagtgctgaaatcgacatcttcttcactgattatgttggtcaaagcggtgaccttgattcgagtagtactgacttggatgctctgtttgcgagagttgcatctactgctgaaggttcaaccgttctggacaaattcatggctaacagctttgtggccgagaaggattctgataaatgcactatttgtatggaggactttgacgggacttctactctcattcgaaccccgtgcgctcatgcctttcacaaatcatgcgttgttcgatggttgatcatgaacaagaacacatgtcccttgtgccgcagtcaactcctcgattgtctccatccaaccaccatatctctttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

225

Amino Acids

24.89

Weight (kDa)

5.86

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 166 - 210 2.9e-14 Ring finger domain
zf-rbx1 PF12678 166 - 210 2.3e-08 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 167 - 209 4.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 167 - 210 4.8e-07 zinc-RING finger domain
zf-RING_11 PF17123 168 - 195 1.4e-08 RING-like zinc finger
zf-C3HC4 PF00097 168 - 209 5.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 168 - 207 8.6e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AciI CCGC 4 cut(s) 124, 308, 372, 628
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 3 cut(s) 93, 166, 458
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 97, 286
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 2 cut(s) 119, 444
AhlI ACTAGT 1 cut(s) 173
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 474
AluI AGCT 1 cut(s) 474
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 653
Alw44I GTGCAC 1 cut(s) 46
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 2 cut(s) 273, 480
ApaLI GTGCAC 1 cut(s) 46
ApoI RAATTY 3 cut(s) 93, 166, 458
AspLEI GCGC 2 cut(s) 214, 560
AspS9I GGNCC 3 cut(s) 134, 181, 274
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 68, 152, 386
AsuII TTCGAA 1 cut(s) 547
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 2 cut(s) 134, 181
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 2 cut(s) 585, 660
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BciT130I CCWGG 1 cut(s) 147
BclI TGATCA 2 cut(s) 157, 597
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 653
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 218
BisI GCNGC 2 cut(s) 309, 628
BlsI GCNGC 2 cut(s) 310, 629
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 99, 147
Bme18I GGWCC 2 cut(s) 134, 181
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 134, 181, 274
BmiI GGNNCC 2 cut(s) 152, 276
BmrFI CCNGG 2 cut(s) 99, 147
BmsI GCATC 5 cut(s) 223, 239, 333, 394, 434
Bpu14I TTCGAA 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 98, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 286
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 98, 146
BseGI GGATG 2 cut(s) 409, 652
BseLI CCNNNNNNNGG 2 cut(s) 97, 286
BseMI GCAATG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 50
BshFI GGCC 2 cut(s) 275, 482
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 2 cut(s) 544, 603
BslI CCNNNNNNNGG 2 cut(s) 97, 286
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 2 cut(s) 544, 603
BsnI GGCC 2 cut(s) 275, 482
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 2 cut(s) 50, 153
Bsp143I GATC 4 cut(s) 157, 193, 268, 597
BspACI CCGC 4 cut(s) 124, 308, 372, 628
BspANI GGCC 2 cut(s) 275, 482
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 152, 276
BspPI GGATC 1 cut(s) 276
BspT104I TTCGAA 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 98, 146
BssMI GATC 4 cut(s) 157, 193, 268, 597
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 50
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 2 cut(s) 409, 652
BstHHI GCGC 2 cut(s) 214, 560
BstKTI GATC 4 cut(s) 160, 196, 271, 600
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 4 cut(s) 157, 193, 268, 597
BstMWI GCNNNNNNNGC 3 cut(s) 413, 422, 431
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 618
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 97, 145
BstSLI GKGCMC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 275, 482
BtsCI GGATG 2 cut(s) 409, 652
BtsIMutI CAGTG 2 cut(s) 334, 351
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 600
CfoI GCGC 2 cut(s) 214, 560
Cfr13I GGNCC 3 cut(s) 134, 181, 274
Csp6I GTAC 1 cut(s) 393
CviAII CATG 6 cut(s) 55, 463, 563, 579, 601, 615
CviJI RGCY 8 cut(s) 103, 151, 244, 275, 290, 467, 474, 482
CviKI_1 RGCY 8 cut(s) 103, 151, 244, 275, 290, 467, 474, 482
CviQI GTAC 1 cut(s) 393
DpnI GATC 4 cut(s) 159, 195, 270, 599
DpnII GATC 4 cut(s) 157, 193, 268, 597
EaeI YGGCCR 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 134, 181
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 6 cut(s) 58, 466, 566, 582, 604, 618
FaqI GGGAC 2 cut(s) 544, 603
FatI CATG 6 cut(s) 54, 462, 562, 578, 600, 614
FbaI TGATCA 2 cut(s) 157, 597
Fnu4HI GCNGC 2 cut(s) 309, 628
FokI GGATG 2 cut(s) 416, 639
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 309, 628
FspAI RTGCGCAY 1 cut(s) 213
FspBI CTAG 2 cut(s) 174, 218
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 2 cut(s) 213, 559
GluI GCNGC 2 cut(s) 309, 628
HaeIII GGCC 2 cut(s) 275, 482
HapII CCGG 1 cut(s) 98
HhaI GCGC 2 cut(s) 214, 560
Hin1II CATG 6 cut(s) 58, 466, 566, 582, 604, 618
Hin6I GCGC 2 cut(s) 212, 558
HinP1I GCGC 2 cut(s) 212, 558
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HinfI GANTC 7 cut(s) 12, 38, 87, 250, 298, 383, 491
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 68, 152, 386
Hpy166II GTNNAC 3 cut(s) 48, 137, 635
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 3 cut(s) 179, 452, 601
Hpy8I GTNNAC 3 cut(s) 48, 137, 635
HpyAV CCTTC 3 cut(s) 328, 431, 481
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 4 cut(s) 48, 324, 425, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 422, 431
Hsp92II CATG 6 cut(s) 58, 466, 566, 582, 604, 618
HspAI GCGC 2 cut(s) 212, 558
Ksp22I TGATCA 2 cut(s) 157, 597
Kzo9I GATC 4 cut(s) 157, 193, 268, 597
LmnI GCTCC 1 cut(s) 156
LweI GCATC 5 cut(s) 223, 239, 333, 394, 434
MaeI CTAG 2 cut(s) 174, 218
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 159, 195, 270, 599
MboI GATC 4 cut(s) 157, 193, 268, 597
MboII GAAGA 5 cut(s) 79, 107, 225, 337, 340
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 50, 153
MluCI AATT 4 cut(s) 93, 166, 185, 458
MlyI GAGTC 2 cut(s) 81, 292
MnlI CCTC 5 cut(s) 210, 248, 259, 511, 650
MseI TTAA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 99, 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 413, 422, 431
NciI CCSGG 1 cut(s) 99
NdeII GATC 4 cut(s) 157, 193, 268, 597
NlaIII CATG 6 cut(s) 58, 466, 566, 582, 604, 618
NlaIV GGNNCC 2 cut(s) 152, 276
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 374
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 618
NspV TTCGAA 1 cut(s) 547
PagI TCATGA 1 cut(s) 600
PciI ACATGT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PfeI GAWTC 5 cut(s) 12, 38, 250, 383, 491
PkrI GCNGC 2 cut(s) 310, 629
PleI GAGTC 2 cut(s) 81, 292
PpsI GAGTC 2 cut(s) 81, 292
PscI ACATGT 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 152, 276
PspPI GGNCC 3 cut(s) 134, 181, 274
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 2 cut(s) 309, 628
Sau3AI GATC 4 cut(s) 157, 193, 268, 597
Sau96I GGNCC 3 cut(s) 134, 181, 274
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 2 cut(s) 81, 292
ScrFI CCNGG 2 cut(s) 99, 147
SduI GDGCHC 2 cut(s) 50, 153
SetI ASST 4 cut(s) 165, 381, 442, 476
SfaNI GCATC 5 cut(s) 223, 239, 333, 394, 434
SfuI TTCGAA 1 cut(s) 547
SinI GGWCC 2 cut(s) 134, 181
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 4 cut(s) 93, 166, 185, 458
SsiI CCGC 4 cut(s) 124, 308, 372, 628
SspMI CTAG 2 cut(s) 174, 218
StyD4I CCNGG 2 cut(s) 97, 145
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 6 cut(s) 10, 339, 386, 547, 589, 642
TaqII GACCGA 1 cut(s) 122
TasI AATT 4 cut(s) 93, 166, 185, 458
TatI WGTACW 1 cut(s) 392
TauI GCSGC 2 cut(s) 311, 630
TfiI GAWTC 5 cut(s) 12, 38, 250, 383, 491
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 334, 358
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 178, 451, 617
TspRI CASTG 2 cut(s) 334, 358
VneI GTGCAC 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 134, 181
XapI RAATTY 3 cut(s) 93, 166, 458
XceI RCATGY 1 cut(s) 618
XspI CTAG 2 cut(s) 174, 218
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.