Rmu_sc0006565.1_g000004

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006565.1
OG0010134
Physical Location & Seq
Reverse (-)
23279 .. 27240
3962 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1071 bp
atggccactctccgctccttcatctcctcctcttcttctcttcatctactccctcctcctctgcttcgcttttctcctcctcctcctatcttccgccacgtcgccacccctagaggattctcgcgcctggttctcgcttcttcggcttctcctttcgatgatctcagacgtccgattcaatcctccaagggaatttgtgaattatgtttgttgaattggggttcagtcgtcgagttgagctgcaatgaccttgagtttcgatatggtttagctggaattatgatacaagatgtagaactgaattgggaatatactctaaggaatgctgaatatagactttgcttagaacgaaactttgatatatctgaagaaaatcttgaaaagcaaacatcagaagattctaacgttgatttacaagggatgctgcttgaaagtgcaaatataatcaaatttcatgcaaaagacgagttttcacctaaggctggagaagtgatggaggacccattggagaatcttgatattcaaggcctcggtgaagtgtcacctgaggttcaacaatatattcttcatttgcaggctcatttgtcttctgccaaaaaggaactccacgatgtcaaaaggaaaagtgctgctcttcaaatgcaacagtttgttggggaagaaaagaatgatttactggactatttaagatcactacagcctgaaaaggtagctgagctatcagaaccaacatcccctgaacttaaagaaataatccactctgttgtccatggtctacttgcaaccctttctccaaagatgcattctaaggcgcctcctttatctgagaatacctcagctggagcaataaatgtcggaagtgaagattgtactgaactagttgaaaacacatcacttcaatttcagccgcttattctattaacgcgggactacctagcacgcctcctcttctggtgcatgctgttaggacactaccttaagggcctcgagtatcgaatggagctaaccgaacttcttgccctaacaagcaatcctgaaggtgatacccctgatgggcaacaaattgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

356

Amino Acids

39.91

Weight (kDa)

4.91

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 224 - 339 1.7e-23 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 811
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 775
AccII CGCG 2 cut(s) 124, 925
AciI CCGC 4 cut(s) 13, 94, 908, 925
AclI AACGTT 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 192, 449
AcuI CTGAAG 2 cut(s) 387, 1056
AcyI GRCGYC 2 cut(s) 169, 812
AfaI GTAC 1 cut(s) 871
AfiI CCNNNNNNNGG 2 cut(s) 482, 1053
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 9 cut(s) 179, 214, 380, 431, 524, 554, 638, 884, 899
AhlI ACTAGT 1 cut(s) 877
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 126
AjuI GAANNNNNNNTTGG 2 cut(s) 787, 819
AluBI AGCT 6 cut(s) 240, 272, 713, 718, 839, 1003
AluI AGCT 6 cut(s) 240, 272, 713, 718, 839, 1003
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 3 cut(s) 3, 526, 982
ApeKI GCWGC 3 cut(s) 240, 424, 629
ApoI RAATTY 2 cut(s) 192, 449
AspLEI GCGC 2 cut(s) 126, 814
AspS9I GGNCC 2 cut(s) 499, 982
AsuHPI GGTGA 4 cut(s) 465, 534, 545, 1052
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 1 cut(s) 499
AxyI CCTNAGG 2 cut(s) 477, 546
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 811
BbsI GAAGAC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 835
BbvI GCAGC 3 cut(s) 227, 411, 616
BccI CCATC 2 cut(s) 487, 1046
BcgI CGANNNNNNTGC 2 cut(s) 998, 1032
BciT130I CCWGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 877
BfaI CTAG 3 cut(s) 111, 878, 935
BfmI CTRYAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 815
BfrI CTTAAG 1 cut(s) 977
BisI GCNGC 4 cut(s) 241, 425, 630, 908
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 4 cut(s) 242, 426, 631, 909
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 986
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 499, 982
BmiI GGNNCC 2 cut(s) 501, 813
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 411, 789
BpiI GAAGAC 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpmI CTGGAG 2 cut(s) 504, 861
Bpu10I CCTNAGC 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 272
BsaHI GRCGYC 2 cut(s) 169, 812
BsaJI CCNNGG 3 cut(s) 186, 529, 769
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 1053
Bse1I ACTGG 1 cut(s) 681
Bse21I CCTNAGG 2 cut(s) 477, 546
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 186, 529, 769
BseGI GGATG 2 cut(s) 426, 731
BseLI CCNNNNNNNGG 2 cut(s) 482, 1053
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 5 cut(s) 178, 537, 705, 816, 849
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 8 cut(s) 16, 19, 45, 48, 66, 69, 72, 935
BseXI GCAGC 3 cut(s) 227, 411, 616
Bsh1236I CGCG 2 cut(s) 124, 925
BshFI GGCC 3 cut(s) 5, 528, 984
BshNI GGYRCC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 482, 1053
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 2 cut(s) 328, 802
BsnI GGCC 3 cut(s) 5, 528, 984
BsoBI CYCGRG 1 cut(s) 986
Bsp143I GATC 2 cut(s) 160, 689
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 4 cut(s) 13, 94, 908, 925
BspANI GGCC 3 cut(s) 5, 528, 984
BspCNI CTCAG 5 cut(s) 177, 538, 706, 817, 848
BspFNI CGCG 2 cut(s) 124, 925
BspLI GGNNCC 2 cut(s) 501, 813
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 977
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 3 cut(s) 186, 529, 769
BssMI GATC 2 cut(s) 160, 689
BssNI GRCGYC 2 cut(s) 169, 812
BssT1I CCWWGG 2 cut(s) 186, 769
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 648
Bst6I CTCTTC 4 cut(s) 37, 45, 639, 953
BstACI GRCGYC 2 cut(s) 169, 812
BstAFI CTTAAG 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 576, 940, 959
BstDEI CTNAG 9 cut(s) 164, 317, 343, 477, 546, 714, 807, 825, 835
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 2 cut(s) 426, 731
BstFNI CGCG 2 cut(s) 124, 925
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 2 cut(s) 126, 814
BstKTI GATC 2 cut(s) 163, 692
BstMBI GATC 2 cut(s) 160, 689
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 2 cut(s) 124, 925
BstV1I GCAGC 3 cut(s) 227, 411, 616
BstV2I GAAGAC 1 cut(s) 579
Bsu36I CCTNAGG 2 cut(s) 477, 546
BsuRI GGCC 3 cut(s) 5, 528, 984
BtgI CCRYGG 1 cut(s) 769
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 426, 731
Cac8I GCNNGC 3 cut(s) 576, 940, 959
CfoI GCGC 2 cut(s) 126, 814
Cfr13I GGNCC 2 cut(s) 499, 982
Csp6I GTAC 1 cut(s) 870
CviAII CATG 3 cut(s) 455, 770, 958
CviQI GTAC 1 cut(s) 870
DdeI CTNAG 9 cut(s) 164, 317, 343, 477, 546, 714, 807, 825, 835
DinI GGCGCC 1 cut(s) 813
DpnI GATC 2 cut(s) 162, 691
DpnII GATC 2 cut(s) 160, 689
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 37, 45, 639, 953
EarI CTCTTC 4 cut(s) 37, 45, 639, 953
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 186, 769
Eco147I AGGCCT 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 387, 1056
Eco81I CCTNAGG 2 cut(s) 477, 546
Eco88I CYCGRG 1 cut(s) 986
EcoO109I RGGNCCY 2 cut(s) 499, 982
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 186, 769
EcoT22I ATGCAT 1 cut(s) 804
EgeI GGCGCC 1 cut(s) 813
EheI GGCGCC 1 cut(s) 813
ErhI CCWWGG 2 cut(s) 186, 769
FaeI CATG 3 cut(s) 458, 773, 961
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 1 cut(s) 941
FatI CATG 3 cut(s) 454, 769, 957
FauI CCCGC 1 cut(s) 918
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 241, 425, 630, 908
FokI GGATG 2 cut(s) 433, 718
Fsp4HI GCNGC 4 cut(s) 241, 425, 630, 908
FspBI CTAG 3 cut(s) 111, 878, 935
GlaI GCGC 2 cut(s) 125, 813
GluI GCNGC 4 cut(s) 241, 425, 630, 908
GsuI CTGGAG 2 cut(s) 504, 861
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 3 cut(s) 5, 528, 984
HhaI GCGC 2 cut(s) 126, 814
Hin1I GRCGYC 2 cut(s) 169, 812
Hin1II CATG 3 cut(s) 458, 773, 961
Hin6I GCGC 2 cut(s) 124, 812
HinP1I GCGC 2 cut(s) 124, 812
HinfI GANTC 4 cut(s) 117, 175, 398, 511
HphI GGTGA 4 cut(s) 465, 534, 545, 1052
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 7 cut(s) 167, 174, 367, 394, 724, 826, 857
Hpy188III TCNNGA 3 cut(s) 377, 515, 1034
Hpy8I GTNNAC 1 cut(s) 776
Hpy99I CGWCG 2 cut(s) 104, 233
HpyAV CCTTC 2 cut(s) 28, 1031
HpyCH4III ACNGT 1 cut(s) 648
HpyCH4IV ACGT 3 cut(s) 99, 169, 405
HpyCH4V TGCA 8 cut(s) 243, 437, 458, 574, 643, 782, 802, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 9 cut(s) 164, 317, 343, 477, 546, 714, 807, 825, 835
HpySE526I ACGT 3 cut(s) 99, 169, 405
Hsp92I GRCGYC 2 cut(s) 169, 812
Hsp92II CATG 3 cut(s) 458, 773, 961
HspAI GCGC 2 cut(s) 124, 812
KasI GGCGCC 1 cut(s) 811
Kzo9I GATC 2 cut(s) 160, 689
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 3 cut(s) 20, 842, 1000
Lsp1109I GCAGC 3 cut(s) 227, 411, 616
LweI GCATC 2 cut(s) 411, 789
MaeI CTAG 3 cut(s) 111, 878, 935
MaeII ACGT 3 cut(s) 99, 169, 405
MaeIII GTNAC 1 cut(s) 540
MalI GATC 2 cut(s) 162, 691
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 160, 689
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 192, 200, 214, 276, 301, 449, 899, 1062
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 812
MmeI TCCRAC 1 cut(s) 835
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 804
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 686, 744, 920, 978
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 839
MspCI CTTAAG 1 cut(s) 977
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 328, 802
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 124, 925
MwoI GCNNNNNNNGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 812
NcoI CCATGG 1 cut(s) 769
NdeII GATC 2 cut(s) 160, 689
NlaIII CATG 3 cut(s) 458, 773, 961
NlaIV GGNNCC 2 cut(s) 501, 813
NmuCI GTSAC 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 1 cut(s) 961
PaeI GCATGC 1 cut(s) 961
PaeR7I CTCGAG 1 cut(s) 986
PceI AGGCCT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 2 cut(s) 328, 802
PfeI GAWTC 4 cut(s) 117, 175, 398, 511
PkrI GCNGC 4 cut(s) 242, 426, 631, 909
PluTI GGCGCC 1 cut(s) 815
PpuMI RGGWCCY 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 501, 813
PspPI GGNCC 2 cut(s) 499, 982
PspPPI RGGWCCY 1 cut(s) 499
PspXI VCTCGAGB 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 1 cut(s) 871
RsaNI GTAC 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 4 cut(s) 686, 744, 920, 978
SatI GCNGC 4 cut(s) 241, 425, 630, 908
Sau3AI GATC 2 cut(s) 160, 689
Sau96I GGNCC 2 cut(s) 499, 982
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 2 cut(s) 411, 789
SfcI CTRYAG 1 cut(s) 695
SfoI GGCGCC 1 cut(s) 813
Sfr274I CTCGAG 1 cut(s) 986
SinI GGWCC 1 cut(s) 499
SlaI CTCGAG 1 cut(s) 986
SmlI CTYRAG 3 cut(s) 251, 977, 986
SmoI CTYRAG 3 cut(s) 251, 977, 986
SpeI ACTAGT 1 cut(s) 877
SphI GCATGC 1 cut(s) 961
Sse9I AATT 8 cut(s) 192, 200, 214, 276, 301, 449, 899, 1062
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 4 cut(s) 13, 94, 908, 925
SspDI GGCGCC 1 cut(s) 811
SspMI CTAG 3 cut(s) 111, 878, 935
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 2 cut(s) 186, 769
TaaI ACNGT 1 cut(s) 648
TaiI ACGT 3 cut(s) 102, 172, 408
TaqI TCGA 5 cut(s) 156, 231, 259, 987, 994
TasI AATT 8 cut(s) 192, 200, 214, 276, 301, 449, 899, 1062
TatI WGTACW 1 cut(s) 869
TauI GCSGC 1 cut(s) 910
TfiI GAWTC 4 cut(s) 117, 175, 398, 511
Tru1I TTAA 4 cut(s) 686, 744, 920, 978
Tru9I TTAA 4 cut(s) 686, 744, 920, 978
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 3 cut(s) 240, 424, 629
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 10, 32, 443, 557
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 499
XapI RAATTY 2 cut(s) 192, 449
XceI RCATGY 1 cut(s) 961
XhoI CTCGAG 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 775
XspI CTAG 3 cut(s) 111, 878, 935
ZraI GACGTC 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.