Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006777.1

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Reverse (-)

15811 .. 18373

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgggaagaactccgtgttgtgacaagaaggggctgaagagaggtccatggacacctgatgaggatgagattcttgtcaattacatcaacaagaataagggacatggcagctggagaactctcccacatcatgcaggtttaaatttctttgtgtgtactgctactcgttctatctgggtgttggtcaatgtttgcccttttcatggtcttcttcgttgtggaaagagttgccggctcaggtggacaaattatctgagaccggacattaagcgcggccctttcactgacgaagaagagaagcttatcattcagctccatggcatgcttggaaacaggtgggctgctatagcttctcagttacctggacgaactgacaatgagatcaagaacttatggaacacgcacctgaggaagcgccttatccgcatgggggtcaatccacaaaatcacgagccctttacctctgatggttcaacttccaaagcatcagcttccatcgcgacacgccacatggcacaatgggagagtgctaggcttgaagctgaggctaggctgtcacgggagtcatcaaacttcagtaccccacttctggataaatctgattcagactactttctgcgcttatggtactccgaagttgggcagtcattcagaaagttccccactgcaggtaaaactccgtctgatagccccatctctgaggcatcttcttcagggaagtgtggatcaatctcggctgtgacaacagaaattggccattgcttaatggggtcatcgaccatagcaggcaatcaagatgaagatatagaatacaaggttttcaagtccattactggtgaagatatggtctacaggatttacaagtccaacactgaaaatgtgacacgtggttctgactcttcaagctccaacaaattagatgactcgtcagaatctgcaatggatttgctactggattaccctattaacaatgacatgagcttcttagaagacgatatgaatgactatgcaacaagcacttctgccaagttagaaaatgctttcatttgccctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.43

Weight (kDa)

6.52

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 85	1.2e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 100	1.5e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	91 - 136	4.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	94 - 139	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	125, 659
AccI	GTMKAC	1 cut(s)	849
AccII	CGCG	2 cut(s)	273, 500
AciI	CCGC	2 cut(s)	273, 424
AclWI	GGATC	1 cut(s)	733
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	3 cut(s)	56, 559, 696
AcvI	CACGTG	1 cut(s)	887
AfaI	GTAC	3 cut(s)	157, 580, 629
AfiI	CCNNNNNNNGG	5 cut(s)	203, 430, 589, 639, 668
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	4 cut(s)	474, 539, 823, 903
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	8 cut(s)	111, 301, 313, 350, 491, 542, 906, 981
AluI	AGCT	8 cut(s)	111, 301, 313, 350, 491, 542, 906, 981
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	733
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	2 cut(s)	274, 754
ApeKI	GCWGC	2 cut(s)	108, 341
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	3 cut(s)	273, 417, 621
AspS9I	GGNCC	2 cut(s)	44, 275
AsuHPI	GGTGA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BalI	TGGCCA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	887
BbsI	GAAGAC	2 cut(s)	200, 996
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	120, 328
BccI	CCATC	3 cut(s)	461, 503, 701
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	531, 549
BfmI	CTRYAG	3 cut(s)	345, 666, 850
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	2 cut(s)	125, 659
BisI	GCNGC	3 cut(s)	109, 274, 342
BlsI	GCNGC	3 cut(s)	110, 275, 343
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 275
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	494, 713
BpiI	GAAGAC	2 cut(s)	200, 996
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	2 cut(s)	236, 543
BsaAI	YACGTR	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	47, 316
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 430, 589, 639, 668
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	838, 957
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	2 cut(s)	757, 945
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	47, 316
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	5 cut(s)	203, 430, 589, 639, 668
BseMI	GCAATG	2 cut(s)	757, 945
BseMII	CTCAG	6 cut(s)	245, 250, 368, 398, 534, 690
BseNI	ACTGG	2 cut(s)	838, 957
BseXI	GCAGC	2 cut(s)	120, 328
Bsh1236I	CGCG	2 cut(s)	273, 500
BshFI	GGCC	2 cut(s)	276, 756
BsiSI	CCGG	2 cut(s)	232, 260
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	5 cut(s)	203, 430, 589, 639, 668
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	276, 756
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	381, 725
Bsp19I	CCATGG	2 cut(s)	47, 316
Bsp68I	TCGCGA	1 cut(s)	500
BspACI	CCGC	2 cut(s)	273, 424
BspANI	GGCC	2 cut(s)	276, 756
BspCNI	CTCAG	6 cut(s)	246, 249, 367, 399, 535, 691
BspFNI	CGCG	2 cut(s)	273, 500
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	125, 659
BspPI	GGATC	1 cut(s)	733
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	757, 945
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	838, 957
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	47, 316
BssMI	GATC	2 cut(s)	381, 725
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	2 cut(s)	47, 316
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	32, 288, 904
BstBAI	YACGTR	1 cut(s)	887
BstC8I	GCNNGC	3 cut(s)	233, 323, 787
BstDEI	CTNAG	7 cut(s)	236, 254, 354, 407, 543, 699, 985
BstDSI	CCRYGG	2 cut(s)	47, 316
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	2 cut(s)	273, 500
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	3 cut(s)	273, 417, 621
BstKTI	GATC	2 cut(s)	384, 728
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	381, 725
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 423, 497
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	3 cut(s)	345, 666, 850
BstUI	CGCG	2 cut(s)	273, 500
BstV1I	GCAGC	2 cut(s)	120, 328
BstV2I	GAAGAC	2 cut(s)	200, 996
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	276, 756
BtgI	CCRYGG	2 cut(s)	47, 316
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	282, 663, 870
BtuMI	TCGCGA	1 cut(s)	500
BveI	ACCTGC	2 cut(s)	125, 659
Cac8I	GCNNGC	3 cut(s)	233, 323, 787
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	3 cut(s)	273, 417, 621
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	44, 275
Csp6I	GTAC	3 cut(s)	156, 579, 628
CviAII	CATG	9 cut(s)	48, 104, 131, 203, 317, 322, 427, 511, 976
CviQI	GTAC	3 cut(s)	156, 579, 628
DdeI	CTNAG	7 cut(s)	236, 254, 354, 407, 543, 699, 985
DpnI	GATC	2 cut(s)	383, 727
DpnII	GATC	2 cut(s)	381, 725
DraI	TTTAAA	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	3 cut(s)	32, 288, 904
EarI	CTCTTC	3 cut(s)	32, 288, 904
Eco130I	CCWWGG	2 cut(s)	47, 316
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	3 cut(s)	56, 559, 696
Eco72I	CACGTG	1 cut(s)	887
Eco81I	CCTNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	47, 316
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	47, 316
FaeI	CATG	9 cut(s)	51, 107, 134, 206, 320, 325, 430, 514, 979
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	9 cut(s)	47, 103, 130, 202, 316, 321, 426, 510, 975
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	3 cut(s)	109, 274, 342
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	3 cut(s)	109, 274, 342
FspBI	CTAG	2 cut(s)	531, 549
GlaI	GCGC	3 cut(s)	272, 416, 620
GluI	GCNGC	3 cut(s)	109, 274, 342
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	276, 756
HapII	CCGG	2 cut(s)	232, 260
HhaI	GCGC	3 cut(s)	273, 417, 621
Hin1II	CATG	9 cut(s)	51, 107, 134, 206, 320, 325, 430, 514, 979
Hin6I	GCGC	3 cut(s)	271, 415, 619
HinP1I	GCGC	3 cut(s)	271, 415, 619
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	6 cut(s)	70, 563, 602, 896, 923, 932
HpaII	CCGG	2 cut(s)	232, 260
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	3 cut(s)	156, 243, 850
Hpy188III	TCNNGA	5 cut(s)	385, 449, 499, 590, 794
Hpy8I	GTNNAC	3 cut(s)	156, 243, 850
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	886
HpyCH4V	TGCA	4 cut(s)	134, 668, 938, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 423, 497
HpyF3I	CTNAG	7 cut(s)	236, 254, 354, 407, 543, 699, 985
HpySE526I	ACGT	1 cut(s)	886
Hsp92II	CATG	9 cut(s)	51, 107, 134, 206, 320, 325, 430, 514, 979
HspAI	GCGC	3 cut(s)	271, 415, 619
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	381, 725
LmnI	GCTCC	2 cut(s)	318, 911
Lsp1109I	GCAGC	2 cut(s)	120, 328
LweI	GCATC	2 cut(s)	494, 713
MaeI	CTAG	2 cut(s)	531, 549
MaeII	ACGT	1 cut(s)	886
MaeIII	GTNAC	5 cut(s)	20, 357, 555, 739, 880
MalI	GATC	2 cut(s)	383, 727
MboI	GATC	2 cut(s)	381, 725
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	5 cut(s)	79, 142, 247, 750, 914
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	3 cut(s)	572, 890, 917
MmeI	TCCRAC	2 cut(s)	891, 933
MnlI	CCTC	6 cut(s)	35, 55, 402, 472, 538, 694
Mox20I	TGGCCA	1 cut(s)	756
MroNI	GCCGGC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	4 cut(s)	140, 267, 764, 966
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	232, 260
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	273, 500
MwoI	GCNNNNNNNGC	3 cut(s)	347, 423, 497
NaeI	GCCGGC	1 cut(s)	233
NcoI	CCATGG	2 cut(s)	47, 316
NdeII	GATC	2 cut(s)	381, 725
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	9 cut(s)	51, 107, 134, 206, 320, 325, 430, 514, 979
NmeAIII	GCCGAG	1 cut(s)	713
NmuCI	GTSAC	4 cut(s)	20, 555, 739, 880
NruI	TCGCGA	1 cut(s)	500
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PdiI	GCCGGC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	70, 602, 932
PkrI	GCNGC	3 cut(s)	110, 275, 343
PleI	GAGTC	3 cut(s)	571, 890, 917
PmaCI	CACGTG	1 cut(s)	887
PmlI	CACGTG	1 cut(s)	887
PpsI	GAGTC	3 cut(s)	571, 890, 917
Ppu21I	YACGTR	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	361
PspCI	CACGTG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	44, 275
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	935
PvuII	CAGCTG	1 cut(s)	111
RruI	TCGCGA	1 cut(s)	500
RsaI	GTAC	3 cut(s)	157, 580, 629
RsaNI	GTAC	3 cut(s)	156, 579, 628
SaqAI	TTAA	4 cut(s)	140, 267, 764, 966
SatI	GCNGC	3 cut(s)	109, 274, 342
Sau3AI	GATC	2 cut(s)	381, 725
Sau96I	GGNCC	2 cut(s)	44, 275
SchI	GAGTC	3 cut(s)	572, 890, 917
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	494, 713
SfcI	CTRYAG	3 cut(s)	345, 666, 850
SinI	GGWCC	1 cut(s)	44
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	5 cut(s)	79, 142, 247, 750, 914
SsiI	CCGC	2 cut(s)	273, 424
SspMI	CTAG	2 cut(s)	531, 549
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	47, 316
TaiI	ACGT	1 cut(s)	889
TaqI	TCGA	1 cut(s)	776
TasI	AATT	5 cut(s)	79, 142, 247, 750, 914
TatI	WGTACW	1 cut(s)	155
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	70, 602, 932
Tru1I	TTAA	4 cut(s)	140, 267, 764, 966
Tru9I	TTAA	4 cut(s)	140, 267, 764, 966
TscAI	CASTG	3 cut(s)	289, 670, 877
TseFI	GTSAC	4 cut(s)	20, 555, 739, 880
TseI	GCWGC	2 cut(s)	108, 341
Tsp45I	GTSAC	4 cut(s)	20, 555, 739, 880
TspDTI	ATGAA	4 cut(s)	191, 813, 1013, 1033
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	3 cut(s)	289, 670, 877
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	2 cut(s)	531, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.