Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006847.1

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Forward (+)

57134 .. 58456

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgggatgctggggtacatactcgccgtacttgattccgaccttgttggggttctcggctgagaagagcatgcgaatgttgagggagagagaggcagaagtggtcgggctcgattcgcagtctagattggagaagcgatttgagtcggcacaacaagcgaaatcgagcatcagattgtctgaacgaaacatcatcgaattggtccaaaagcttcacaagctccacatggtggcgaaggatgagtggatgagggcggcgatgactgactgctttctggtcttcagttcggatctgttcgtgaccgaattggaaatggaaggtgatgacggcgatgatatctgggaggatgatgaggttctcaaggaccacgccggcgagcccaatttctcgcctgacctcaagctcttcgtcggaaaccttcccctcactgttgagatggttgaggtgatgtatgacaagacgactggaagaagcaagggactcgggtttttgaccatgtcgagtgctcaggaagtagaagcagctgctcgacagttcaatgtctatcccttaaagtgggccccattgtcgaacttaagggctaatttggacggaatggatacgattgagaaaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

205

Amino Acids

23.28

Weight (kDa)

4.75

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E3_UFM1_ligase	PF09743	41 - 77	1.5e-08	E3 UFM1-protein ligase 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	2 cut(s)	16, 29
AfiI	CCNNNNNNNGG	3 cut(s)	48, 229, 555
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	538
AluBI	AGCT	4 cut(s)	211, 220, 403, 524
AluI	AGCT	4 cut(s)	211, 220, 403, 524
Alw21I	GWGCWC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	558
ApaI	GGGCCC	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	521, 524
AspS9I	GGNCC	4 cut(s)	202, 364, 558, 559
AsuHPI	GGTGA	2 cut(s)	332, 457
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	202, 364
BaeGI	GKGCMC	1 cut(s)	562
BanII	GRGCYC	3 cut(s)	111, 381, 562
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	511, 533
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	2 cut(s)	10, 343
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciVI	GTATCC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	3 cut(s)	255, 522, 525
BlsI	GCNGC	3 cut(s)	256, 523, 526
Bme18I	GGWCC	2 cut(s)	202, 364
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	4 cut(s)	202, 364, 558, 559
BmiI	GGNNCC	2 cut(s)	560, 561
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	344, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 229, 555
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	469
BseGI	GGATG	4 cut(s)	11, 244, 252, 352
BseLI	CCNNNNNNNGG	3 cut(s)	48, 229, 555
BseMII	CTCAG	2 cut(s)	51, 521
BseNI	ACTGG	1 cut(s)	469
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	511, 533
BseYI	CCCAGC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	48, 229, 555
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	482
Bsp120I	GGGCCC	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	111, 381, 508, 562
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	52, 520
BspLI	GGNNCC	2 cut(s)	560, 561
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	2 cut(s)	59, 410
BspTI	CTTAAG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	430, 534
Bst6I	CTCTTC	2 cut(s)	59, 410
BstAFI	CTTAAG	1 cut(s)	574
BstC8I	GCNNGC	3 cut(s)	71, 373, 377
BstDEI	CTNAG	2 cut(s)	60, 507
BstF5I	GGATG	4 cut(s)	11, 244, 252, 352
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 155, 217
BstNSI	RCATGY	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	2 cut(s)	511, 533
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	560
BtgZI	GCGATG	2 cut(s)	272, 345
BtsCI	GGATG	4 cut(s)	11, 244, 252, 352
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	71, 373, 377
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	4 cut(s)	202, 364, 558, 559
Csp6I	GTAC	2 cut(s)	15, 28
CviAII	CATG	3 cut(s)	70, 226, 496
CviJI	RGCY	9 cut(s)	59, 109, 211, 220, 379, 403, 524, 560, 581
CviKI_1	RGCY	9 cut(s)	59, 109, 211, 220, 379, 403, 524, 560, 581
CviQI	GTAC	2 cut(s)	15, 28
DdeI	CTNAG	2 cut(s)	60, 507
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	59, 410
EarI	CTCTTC	2 cut(s)	59, 410
Eco24I	GRGCYC	3 cut(s)	111, 381, 562
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	202, 364
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	3 cut(s)	111, 381, 562
FaeI	CATG	3 cut(s)	73, 229, 499
FaiI	YATR	5 cut(s)	19, 71, 227, 453, 497
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	3 cut(s)	69, 225, 495
Fnu4HI	GCNGC	3 cut(s)	255, 522, 525
FokI	GGATG	4 cut(s)	18, 251, 259, 359
FriOI	GRGCYC	3 cut(s)	111, 381, 562
Fsp4HI	GCNGC	3 cut(s)	255, 522, 525
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	255, 522, 525
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	372
Hin1II	CATG	3 cut(s)	73, 229, 499
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	34, 113, 143, 480
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	2 cut(s)	332, 457
Hpy188I	TCNGA	5 cut(s)	39, 173, 181, 289, 413
Hpy188III	TCNNGA	3 cut(s)	123, 298, 509
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	229, 311, 428
HpyCH4III	ACNGT	2 cut(s)	430, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 155, 217
HpyF3I	CTNAG	2 cut(s)	60, 507
Hsp92II	CATG	3 cut(s)	73, 229, 499
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	289
LguI	GCTCTTC	2 cut(s)	59, 410
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	260, 325, 385, 405, 450, 494
Lsp1109I	GCAGC	2 cut(s)	511, 533
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	76, 271, 397, 480
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	4 cut(s)	111, 381, 508, 562
MluCI	AATT	5 cut(s)	197, 305, 382, 583, 613
MlyI	GAGTC	2 cut(s)	152, 474
MmeI	TCCRAC	2 cut(s)	62, 391
MnlI	CCTC	8 cut(s)	75, 85, 243, 337, 346, 407, 434, 436
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	371
MseI	TTAA	2 cut(s)	551, 575
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	115, 155, 217
NaeI	GCCGGC	1 cut(s)	373
NdeII	GATC	1 cut(s)	289
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	73, 229, 499
NlaIV	GGNNCC	2 cut(s)	560, 561
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	73
PciSI	GCTCTTC	2 cut(s)	59, 410
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	34, 113
PflFI	GACNNNGTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	256, 523, 526
PleI	GAGTC	2 cut(s)	151, 474
PpsI	GAGTC	2 cut(s)	151, 474
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	560, 561
PspOMI	GGGCCC	1 cut(s)	558
PspPI	GGNCC	4 cut(s)	202, 364, 558, 559
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	16, 29
RsaNI	GTAC	2 cut(s)	15, 28
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	2 cut(s)	59, 410
SaqAI	TTAA	2 cut(s)	551, 575
SatI	GCNGC	3 cut(s)	255, 522, 525
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	4 cut(s)	202, 364, 558, 559
SchI	GAGTC	2 cut(s)	152, 474
SduI	GDGCHC	4 cut(s)	111, 381, 508, 562
SfaNI	GCATC	1 cut(s)	177
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	2 cut(s)	202, 364
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	3 cut(s)	359, 398, 574
SmoI	CTYRAG	3 cut(s)	359, 398, 574
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	5 cut(s)	197, 305, 382, 583, 613
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	430, 534
TaqI	TCGA	6 cut(s)	111, 164, 195, 500, 529, 569
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	197, 305, 382, 583, 613
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	34, 113
Tru1I	TTAA	2 cut(s)	551, 575
Tru9I	TTAA	2 cut(s)	551, 575
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	521, 524
Tsp45I	GTSAC	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	433
Tth111I	GACNNNGTC	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	202, 364
XbaI	TCTAGA	1 cut(s)	122
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.