Rmu_sc0006854.1_g000001

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006854.1
OG0005340
Physical Location & Seq
Reverse (-)
1 .. 3300
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 923 bp
atggcgaagaagccaatccgcggtcggcgctcgccgccttccggctccggctccgcctcatcctcactctcccgctccccttccggttcattctcaggctcttcctcccgctcctcctctcgttcccggtctcgctccaggtcctccgcctcctcctcgtcccgcagcggcagctctcgcagccctagcccccgttcctccaaaagaagtcctggcgctcgacgaggtcgatctcctccaccatcgaaaagggcatctccacctccaaggaaatcttctccggctcatgagtcacttgttcttcacattgataagctttcaaggaatgtgaatgaaggccatttaagagaaatttttggaaactatggtgaagttgtacatgttgagctggcaatggatcgtagtgttaatcttccaaaaggatatggatacgtggagttcaagatgagagcagatgctgaaaaagcactattacacatggatggcggtcaaattgatggtaatgtagttcaagcaaaatttacattatctcagcgtcagaagtcgccacctcctaagcctgttgtgactgctccaaagagagatactgtgaaaactgatggtatcaatgctgataaggatggaccaaagcgtttgagggaagcttctcctcgtcggagaccaccttcaccacgaaggagatctccagtggctcgtagaggtggatctccaagaagaccgctagattctccaccacctcgtcgtcgagcaggttctccttaccgacgcggtgatacatctccaagaaggaggcttatttctccatcccgaggacgttctgggtctccgccaccaaggcggcgatccccagttagggcttctccaagaaggatacgtggcagcccccctgttcgcagacgtggctctcctcccccaaggcgccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

308

Amino Acids

33.68

Weight (kDa)

12.0

Isoelectric Point (pI)

135.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 103 - 170 1.9e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 918
AccBSI CCGCTC 2 cut(s) 75, 111
AccII CGCG 2 cut(s) 21, 768
AclWI GGATC 3 cut(s) 405, 712, 837
AcsI RAATTY 2 cut(s) 351, 518
AcyI GRCGYC 1 cut(s) 919
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 5 cut(s) 20, 41, 809, 852, 853
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 3 cut(s) 321, 442, 512
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 2 cut(s) 137, 211
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 4 cut(s) 174, 316, 388, 644
AluI AGCT 4 cut(s) 174, 316, 388, 644
Alw26I GTCTC 3 cut(s) 135, 652, 828
AlwI GGATC 3 cut(s) 405, 712, 837
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 807
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 4 cut(s) 165, 171, 180, 879
ApoI RAATTY 2 cut(s) 351, 518
AspLEI GCGC 3 cut(s) 30, 218, 921
AspS9I GGNCC 2 cut(s) 141, 623
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 380, 660, 782
AvaI CYCGRG 1 cut(s) 807
AvaII GGWCC 2 cut(s) 141, 623
BanI GGYRCC 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 721
BbvI GCAGC 4 cut(s) 177, 183, 192, 891
BccI CCATC 6 cut(s) 250, 476, 491, 593, 614, 811
BciT130I CCWGG 2 cut(s) 139, 213
BciVI GTATCC 2 cut(s) 422, 864
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 135, 652, 828
BfaI CTAG 2 cut(s) 186, 722
BfoI RGCGCY 3 cut(s) 31, 219, 922
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 2 cut(s) 422, 864
BglI GCCNNNNNGGC 1 cut(s) 835
BglII AGATCT 1 cut(s) 680
BisI GCNGC 7 cut(s) 35, 166, 169, 172, 181, 839, 880
BlsI GCNGC 7 cut(s) 36, 167, 170, 173, 182, 840, 881
Bme1390I CCNGG 3 cut(s) 127, 139, 213
Bme18I GGWCC 2 cut(s) 141, 623
BmeT110I CYCGRG 1 cut(s) 807
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 141, 623
BmiI GGNNCC 3 cut(s) 46, 52, 920
BmrFI CCNGG 3 cut(s) 127, 139, 213
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 2 cut(s) 263, 445
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 721
BpmI CTGGAG 2 cut(s) 121, 669
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 433, 875
BsaHI GRCGYC 1 cut(s) 919
BsaI GGTCTC 3 cut(s) 135, 652, 828
BsaJI CCNNGG 5 cut(s) 19, 266, 808, 833, 914
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 41, 809, 852, 853
Bse1I ACTGG 2 cut(s) 686, 848
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 2 cut(s) 139, 213
BseDI CCNNGG 5 cut(s) 19, 266, 808, 833, 914
BseGI GGATG 4 cut(s) 59, 487, 625, 803
BseLI CCNNNNNNNGG 5 cut(s) 20, 41, 809, 852, 853
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 108, 545
BseNI ACTGG 2 cut(s) 686, 848
BseRI GAGGAG 7 cut(s) 103, 106, 142, 145, 225, 639, 897
BseXI GCAGC 4 cut(s) 177, 183, 192, 891
Bsh1236I CGCG 2 cut(s) 21, 768
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 807
BsiSI CCGG 5 cut(s) 42, 48, 84, 127, 281
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 5 cut(s) 20, 41, 809, 852, 853
BsmAI GTCTC 3 cut(s) 135, 652, 828
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 3 cut(s) 135, 652, 828
BsoBI CYCGRG 1 cut(s) 807
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 5 cut(s) 230, 397, 680, 704, 842
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 107, 544
BspFNI CGCG 2 cut(s) 21, 768
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 46, 52, 920
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 3 cut(s) 405, 712, 837
BspQI GCTCTTC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 918
BspTNI GGTCTC 3 cut(s) 135, 652, 828
BsrBI CCGCTC 2 cut(s) 75, 111
BsrDI GCAATG 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 2 cut(s) 686, 848
BssECI CCNNGG 5 cut(s) 19, 266, 808, 833, 914
BssMI GATC 5 cut(s) 230, 397, 680, 704, 842
BssNI GRCGYC 1 cut(s) 919
BssT1I CCWWGG 3 cut(s) 266, 833, 914
Bst2UI CCWGG 2 cut(s) 139, 213
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 919
BstAUI TGTACA 1 cut(s) 376
BstBAI YACGTR 2 cut(s) 433, 875
BstC8I GCNNGC 2 cut(s) 32, 390
BstDEI CTNAG 3 cut(s) 94, 531, 555
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 4 cut(s) 59, 487, 625, 803
BstFNI CGCG 2 cut(s) 21, 768
BstH2I RGCGCY 3 cut(s) 31, 219, 922
BstHHI GCGC 3 cut(s) 30, 218, 921
BstKTI GATC 5 cut(s) 233, 400, 683, 707, 845
BstMAI GTCTC 3 cut(s) 135, 652, 828
BstMBI GATC 5 cut(s) 230, 397, 680, 704, 842
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 9 cut(s) 27, 34, 171, 177, 180, 186, 464, 835, 900
BstNI CCWGG 2 cut(s) 139, 213
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 3 cut(s) 125, 137, 211
BstUI CGCG 2 cut(s) 21, 768
BstV1I GCAGC 4 cut(s) 177, 183, 192, 891
BstV2I GAAGAC 1 cut(s) 721
BstX2I RGATCY 2 cut(s) 680, 704
BstYI RGATCY 2 cut(s) 680, 704
BsuI GTATCC 2 cut(s) 422, 864
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 4 cut(s) 59, 487, 625, 803
BtsIMutI CAGTG 1 cut(s) 693
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 32, 390
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 286
CfoI GCGC 3 cut(s) 30, 218, 921
Cfr13I GGNCC 2 cut(s) 141, 623
Cfr42I CCGCGG 1 cut(s) 22
CseI GACGC 2 cut(s) 524, 774
Csp6I GTAC 1 cut(s) 377
CviAII CATG 3 cut(s) 287, 380, 478
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 3 cut(s) 94, 531, 555
DinI GGCGCC 1 cut(s) 920
DpnI GATC 5 cut(s) 232, 399, 682, 706, 844
DpnII GATC 5 cut(s) 230, 397, 680, 704, 842
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 3 cut(s) 43, 136, 816
Eco130I CCWWGG 3 cut(s) 266, 833, 914
Eco31I GGTCTC 3 cut(s) 135, 652, 828
Eco47I GGWCC 2 cut(s) 141, 623
Eco88I CYCGRG 1 cut(s) 807
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 137, 211
EcoT14I CCWWGG 3 cut(s) 266, 833, 914
EgeI GGCGCC 1 cut(s) 920
EheI GGCGCC 1 cut(s) 920
ErhI CCWWGG 3 cut(s) 266, 833, 914
FaeI CATG 3 cut(s) 290, 383, 481
FaiI YATR 5 cut(s) 288, 366, 381, 426, 479
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 286, 379, 477
FauI CCCGC 3 cut(s) 80, 116, 170
Fnu4HI GCNGC 7 cut(s) 35, 166, 169, 172, 181, 839, 880
FokI GGATG 4 cut(s) 46, 494, 632, 790
Fsp4HI GCNGC 7 cut(s) 35, 166, 169, 172, 181, 839, 880
FspBI CTAG 2 cut(s) 186, 722
GlaI GCGC 3 cut(s) 29, 217, 920
GluI GCNGC 7 cut(s) 35, 166, 169, 172, 181, 839, 880
GsuI CTGGAG 2 cut(s) 121, 669
HaeII RGCGCY 3 cut(s) 31, 219, 922
HaeIII GGCC 1 cut(s) 339
HapII CCGG 5 cut(s) 42, 48, 84, 127, 281
HgaI GACGC 2 cut(s) 524, 774
HhaI GCGC 3 cut(s) 30, 218, 921
Hin1I GRCGYC 1 cut(s) 919
Hin1II CATG 3 cut(s) 290, 383, 481
Hin6I GCGC 3 cut(s) 28, 216, 919
HinP1I GCGC 3 cut(s) 28, 216, 919
HindIII AAGCTT 2 cut(s) 314, 642
HinfI GANTC 2 cut(s) 290, 725
HpaII CCGG 5 cut(s) 42, 48, 84, 127, 281
HphI GGTGA 3 cut(s) 380, 660, 782
Hpy188I TCNGA 2 cut(s) 540, 657
Hpy188III TCNNGA 3 cut(s) 287, 442, 807
Hpy99I CGWCG 5 cut(s) 225, 657, 744, 747, 768
HpyAV CCTTC 7 cut(s) 48, 90, 329, 669, 675, 780, 861
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 4 cut(s) 432, 814, 874, 898
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 34, 171, 177, 180, 186, 464, 835, 900
HpyF3I CTNAG 3 cut(s) 94, 531, 555
HpySE526I ACGT 4 cut(s) 432, 814, 874, 898
Hsp92I GRCGYC 1 cut(s) 919
Hsp92II CATG 3 cut(s) 290, 383, 481
HspAI GCGC 3 cut(s) 28, 216, 919
KasI GGCGCC 1 cut(s) 918
KspI CCGCGG 1 cut(s) 22
Kzo9I GATC 5 cut(s) 230, 397, 680, 704, 842
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 6 cut(s) 50, 56, 80, 116, 140, 577
Lsp1109I GCAGC 4 cut(s) 177, 183, 192, 891
LweI GCATC 2 cut(s) 263, 445
MaeI CTAG 2 cut(s) 186, 722
MaeII ACGT 4 cut(s) 432, 814, 874, 898
MaeIII GTNAC 2 cut(s) 291, 565
MalI GATC 5 cut(s) 232, 399, 682, 706, 844
MbiI CCGCTC 2 cut(s) 75, 111
MboI GATC 5 cut(s) 230, 397, 680, 704, 842
MboII GAAGA 6 cut(s) 19, 93, 267, 293, 404, 726
MflI RGATCY 2 cut(s) 680, 704
MluCI AATT 3 cut(s) 351, 492, 518
Mly113I GGCGCC 1 cut(s) 919
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 635
MseI TTAA 2 cut(s) 344, 408
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 21, 168
MspI CCGG 5 cut(s) 42, 48, 84, 127, 281
MspR9I CCNGG 3 cut(s) 127, 139, 213
MvaI CCWGG 2 cut(s) 139, 213
MvnI CGCG 2 cut(s) 21, 768
MwoI GCNNNNNNNGC 9 cut(s) 27, 34, 171, 177, 180, 186, 464, 835, 900
NarI GGCGCC 1 cut(s) 919
NciI CCSGG 1 cut(s) 127
NdeII GATC 5 cut(s) 230, 397, 680, 704, 842
NlaIII CATG 3 cut(s) 290, 383, 481
NlaIV GGNNCC 3 cut(s) 46, 52, 920
NmuCI GTSAC 2 cut(s) 291, 565
NspI RCATGY 1 cut(s) 383
PagI TCATGA 1 cut(s) 286
PciI ACATGT 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PfeI GAWTC 1 cut(s) 725
PflFI GACNNNGTC 1 cut(s) 225
PkrI GCNGC 7 cut(s) 36, 167, 170, 173, 182, 840, 881
PleI GAGTC 1 cut(s) 298
PluTI GGCGCC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 2 cut(s) 433, 875
PpuMI RGGWCCY 1 cut(s) 141
PscI ACATGT 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 137, 211
PspGI CCWGG 2 cut(s) 137, 211
PspN4I GGNNCC 3 cut(s) 46, 52, 920
PspPI GGNCC 2 cut(s) 141, 623
PspPPI RGGWCCY 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 680, 704
PsyI GACNNNGTC 1 cut(s) 225
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 480
SacII CCGCGG 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 344, 408
SatI GCNGC 7 cut(s) 35, 166, 169, 172, 181, 839, 880
Sau3AI GATC 5 cut(s) 230, 397, 680, 704, 842
Sau96I GGNCC 2 cut(s) 141, 623
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 127, 139, 213
SfaNI GCATC 2 cut(s) 263, 445
SfoI GGCGCC 1 cut(s) 920
Sfr303I CCGCGG 1 cut(s) 22
SgrBI CCGCGG 1 cut(s) 22
SinI GGWCC 2 cut(s) 141, 623
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 3 cut(s) 351, 492, 518
SspDI GGCGCC 1 cut(s) 918
SspMI CTAG 2 cut(s) 186, 722
StyD4I CCNGG 3 cut(s) 125, 137, 211
StyI CCWWGG 3 cut(s) 266, 833, 914
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 4 cut(s) 435, 817, 877, 901
TaqI TCGA 4 cut(s) 220, 229, 245, 745
TasI AATT 3 cut(s) 351, 492, 518
TatI WGTACW 1 cut(s) 376
TauI GCSGC 3 cut(s) 37, 171, 841
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 2 cut(s) 344, 408
Tru9I TTAA 2 cut(s) 344, 408
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 2 cut(s) 291, 565
TseI GCWGC 4 cut(s) 165, 171, 180, 879
Tsp45I GTSAC 2 cut(s) 291, 565
TspDTI ATGAA 2 cut(s) 78, 348
TspRI CASTG 1 cut(s) 693
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 141, 623
XapI RAATTY 2 cut(s) 351, 518
XceI RCATGY 1 cut(s) 383
XspI CTAG 2 cut(s) 186, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.