Rmu_sc0006885.1_g000005

CTD small phosphatase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006885.1
OG0006277
Physical Location & Seq
Forward (+)
22721 .. 29587
6867 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1863 bp
atgcggactggagcggaagctgaaccggggataatcaagaggtttcaatttgtcgttgacttgatgttgacgaagcgcagactccctttagtttcctccctctgtattctccctatgcgagctccctccgtaacctccctatgcgatctccatgcgatctccctccgtaacctccctatgcgaagccgtccgtatgatccaacagaagccgacatagtacttgtgtctctgaccgttaagagagagaagaacagtctttcacagagaaagagaaagagaaagagtcagctgcttattcagtggggtgccaaaggaggcatctgtgctgaaggaagcagtggtcttgagcatggcatgaaattttgtcaggtgaaaacagacacagacacagacgcattgaggcatctcactaccaaacaagtcaagattgtggtgcttatcacaagtacagatcaaatgccatctttaaaaatgaaggctcaatcaagcacaggatgtttaaaagagaaaaatgctcttcgtgtatgtcaaaagtcatgtgttatttccaagcaagcatgttcttatgtgaagagatgtgaacatacgacagatttcaactcttgtaaatgtcaggcggtttcctcgagcaccgaagtttctatgaaggaaaatggaagtggtgaagcaattgacgagcttgatgaagaagattataaaattctgattcagtcatgtgattctccaaccaaaagagcggaatcgttcgccacctgcccgtcaaacttggagacaattttctctccttcttttgaccctattgaagtacgtagcgaagcaaatagtgaaccaaatgcggagaatgatgcagggttgggagctggtgacagtgatgataacagaagttcatgtgacaatcaaagttgtgatgtttcagatttctacatatctgatatgatcatttcgagcttacccttcagtggggatgcatttactgatgatatttgtgaaacgaattgctttccggactacaaatgtgcggaatcaaacatcttgtttgatgtttctgagcaatacatggtattgcctttcctagaagacactgtccgaaatagtaatactaatactctggatgataaattatgtcaagaagctgttatggatacagatcgggctgccttgtatttagaaatgggtcaaatgagaccctgccaccaggatactgttgttaactcttctgactcagatcaggcagagtgcttcgatccacagttgtttataaaaaatttaccagaattatcagatgtggtatcgaactttcaacccaatatatcgcctgaggaagcttcaaaaagcaagtctgtaactcttgtacttgatttggatgaaacactggttcattctacattagaacattgcgatgacgcagacttcacatttactgtctttttcaacatgaaagagcacatggtatatgtgaaacagaggccatacctccaaacattcttggagcgagttgcagaaatgtttgatgttgttattttcactgccagccaaagcatatatgccgagcaacttcttgatatattggatccatatcgaaagttcatatctcgccgagtttatcgtgaatcatgccttttcgcagatggcagttacactaaagatctgacagtcttgggggttgatcttgcaaaagttgccattattgataatactccacaggttttccgcttgcaagtcaataatggaattcccataaagagttggtttgatgatccatccgacagtgcattgatttcattacttcctttcttagagaccctggttaatgctgatgatgtccgccccataattgccaagaaattcggtaacaaggaataa

Protein Analysis

620

Amino Acids

69.35

Weight (kDa)

4.83

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 449 - 609 1.9e-56 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 696, 1259
AarI CACCTGC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 2 cut(s) 14, 737
AccIII TCCGGA 1 cut(s) 1003
AciI CCGC 8 cut(s) 4, 14, 617, 737, 836, 1019, 1711, 1825
AclWI GGATC 5 cut(s) 191, 1238, 1565, 1578, 1751
AcsI RAATTY 5 cut(s) 359, 699, 1264, 1731, 1844
AcuI CTGAAG 2 cut(s) 348, 940
AfaI GTAC 4 cut(s) 219, 448, 807, 1353
AfiI CCNNNNNNNGG 2 cut(s) 959, 960
AgsI TTSAA 6 cut(s) 47, 598, 803, 1301, 1329, 1432
AjnI CCWGG 2 cut(s) 1194, 1803
AluBI AGCT 8 cut(s) 20, 122, 289, 679, 860, 948, 1133, 1325
AluI AGCT 8 cut(s) 20, 122, 289, 679, 860, 948, 1133, 1325
Alw21I GWGCWC 3 cut(s) 124, 632, 1446
Alw26I GTCTC 4 cut(s) 231, 764, 1177, 1793
AlwI GGATC 5 cut(s) 191, 1238, 1565, 1578, 1751
Ama87I CYCGRG 1 cut(s) 625
Aor13HI TCCGGA 1 cut(s) 1003
AoxI GGCC 1 cut(s) 1466
ApeKI GCWGC 2 cut(s) 289, 1154
ApoI RAATTY 5 cut(s) 359, 699, 1264, 1731, 1844
ArsI GACNNNNNNTTYG 2 cut(s) 1322, 1354
AspLEI GCGC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 382, 674, 875
AvaI CYCGRG 1 cut(s) 625
AxyI CCTNAGG 1 cut(s) 1317
BaeI ACNNNNGTAYC 2 cut(s) 1191, 1224
BamHI GGATCC 1 cut(s) 1570
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 1083
Bbv12I GWGCWC 3 cut(s) 124, 632, 1446
BbvI GCAGC 2 cut(s) 276, 1141
BccI CCATC 3 cut(s) 469, 1622, 1768
BceAI ACGGC 1 cut(s) 171
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 2 cut(s) 1196, 1805
BciVI GTATCC 2 cut(s) 1135, 1192
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 4 cut(s) 231, 764, 1177, 1793
BfaI CTAG 1 cut(s) 1073
BfuAI ACCTGC 1 cut(s) 761
BfuI GTATCC 2 cut(s) 1135, 1192
BglII AGATCT 1 cut(s) 1645
BisI GCNGC 2 cut(s) 290, 1155
BlsI GCNGC 2 cut(s) 291, 1156
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 3 cut(s) 27, 1196, 1805
BmeT110I CYCGRG 1 cut(s) 625
BmiI GGNNCC 2 cut(s) 307, 1572
BmrFI CCNGG 3 cut(s) 27, 1196, 1805
BmsI GCATC 4 cut(s) 327, 412, 835, 955
BpiI GAAGAC 1 cut(s) 1083
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 809
BsaBI GATNNNNATC 2 cut(s) 1146, 1575
BsaI GGTCTC 2 cut(s) 1177, 1793
BsaJI CCNNGG 2 cut(s) 26, 1803
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 2 cut(s) 959, 960
Bse1I ACTGG 2 cut(s) 13, 1377
Bse21I CCTNAGG 1 cut(s) 1317
Bse3DI GCAATG 1 cut(s) 1393
Bse8I GATNNNNATC 2 cut(s) 1146, 1575
BseAI TCCGGA 1 cut(s) 1003
BseBI CCWGG 2 cut(s) 1196, 1805
BseDI CCNNGG 2 cut(s) 26, 1803
BseGI GGATG 5 cut(s) 500, 970, 1117, 1369, 1760
BseJI GATNNNNATC 2 cut(s) 1146, 1575
BseLI CCNNNNNNNGG 2 cut(s) 959, 960
BseMI GCAATG 1 cut(s) 1393
BseMII CTCAG 3 cut(s) 1038, 1236, 1308
BseNI ACTGG 2 cut(s) 13, 1377
BseXI GCAGC 2 cut(s) 276, 1141
BshFI GGCC 1 cut(s) 1468
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 3 cut(s) 124, 632, 1446
BsiHKCI CYCGRG 1 cut(s) 625
BsiSI CCGG 2 cut(s) 26, 1004
BslI CCNNNNNNNGG 2 cut(s) 959, 960
BsmAI GTCTC 4 cut(s) 231, 764, 1177, 1793
BsnI GGCC 1 cut(s) 1468
Bso31I GGTCTC 2 cut(s) 1177, 1793
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 3 cut(s) 124, 632, 1446
Bsp13I TCCGGA 1 cut(s) 1003
BspACI CCGC 8 cut(s) 4, 14, 617, 737, 836, 1019, 1711, 1825
BspANI GGCC 1 cut(s) 1468
BspCNI CTCAG 3 cut(s) 1039, 1235, 1309
BspEI TCCGGA 1 cut(s) 1003
BspLI GGNNCC 2 cut(s) 307, 1572
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 5 cut(s) 191, 1238, 1565, 1578, 1751
BspQI GCTCTTC 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 1177, 1793
BsrBI CCGCTC 2 cut(s) 14, 737
BsrDI GCAATG 1 cut(s) 1393
BsrI ACTGG 2 cut(s) 13, 1377
BssECI CCNNGG 2 cut(s) 26, 1803
Bst2UI CCWGG 2 cut(s) 1196, 1805
Bst4CI ACNGT 9 cut(s) 235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
Bst6I CTCTTC 3 cut(s) 522, 566, 1219
BstAPI GCANNNNNTGC 1 cut(s) 1679
BstBAI YACGTR 1 cut(s) 809
BstC8I GCNNGC 4 cut(s) 120, 555, 1531, 1715
BstDEI CTNAG 4 cut(s) 1047, 1222, 1317, 1795
BstF5I GGATG 5 cut(s) 500, 970, 1117, 1369, 1760
BstHHI GCGC 1 cut(s) 78
BstMAI GTCTC 4 cut(s) 231, 764, 1177, 1793
BstMWI GCNNNNNNNGC 1 cut(s) 1679
BstNI CCWGG 2 cut(s) 1196, 1805
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 3 cut(s) 25, 1194, 1803
BstSNI TACGTA 1 cut(s) 809
BstV1I GCAGC 2 cut(s) 276, 1141
BstV2I GAAGAC 1 cut(s) 1083
BstX2I RGATCY 2 cut(s) 1570, 1645
BstYI RGATCY 2 cut(s) 1570, 1645
Bsu36I CCTNAGG 1 cut(s) 1317
BsuI GTATCC 2 cut(s) 1135, 1192
BsuRI GGCC 1 cut(s) 1468
BtgZI GCGATG 1 cut(s) 1413
BtsCI GGATG 5 cut(s) 500, 970, 1117, 1369, 1760
BtsI GCAGTG 2 cut(s) 343, 1524
BtsIMutI CAGTG 8 cut(s) 305, 343, 874, 964, 1080, 1370, 1524, 1774
BveI ACCTGC 1 cut(s) 761
Cac8I GCNNGC 4 cut(s) 120, 555, 1531, 1715
CfoI GCGC 1 cut(s) 78
CseI GACGC 2 cut(s) 401, 1412
Csp6I GTAC 4 cut(s) 218, 447, 806, 1352
CviQI GTAC 4 cut(s) 218, 447, 806, 1352
DdeI CTNAG 4 cut(s) 1047, 1222, 1317, 1795
DraI TTTAAA 2 cut(s) 468, 501
Eam1104I CTCTTC 3 cut(s) 522, 566, 1219
EarI CTCTTC 3 cut(s) 522, 566, 1219
EciI GGCGGA 1 cut(s) 1814
Ecl136II GAGCTC 1 cut(s) 122
Eco105I TACGTA 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 2 cut(s) 1177, 1793
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 348, 940
Eco81I CCTNAGG 1 cut(s) 1317
Eco88I CYCGRG 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 1731
EcoRII CCWGG 2 cut(s) 1194, 1803
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 1 cut(s) 124
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 2 cut(s) 290, 1155
FokI GGATG 5 cut(s) 507, 977, 1124, 1376, 1747
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 290, 1155
FspBI CTAG 1 cut(s) 1073
GlaI GCGC 1 cut(s) 77
GluI GCNGC 2 cut(s) 290, 1155
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 1468
HapII CCGG 2 cut(s) 26, 1004
HgaI GACGC 2 cut(s) 401, 1412
HhaI GCGC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 3 cut(s) 58, 69, 1210
HindII GTYRAC 3 cut(s) 58, 69, 1210
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 8 cut(s) 81, 283, 706, 719, 740, 1022, 1220, 1610
HpaI GTTAAC 1 cut(s) 1210
HpaII CCGG 2 cut(s) 26, 1004
HphI GGTGA 3 cut(s) 382, 674, 875
Hpy166II GTNNAC 5 cut(s) 58, 69, 581, 827, 1210
Hpy188III TCNNGA 8 cut(s) 37, 344, 424, 1004, 1109, 1127, 1559, 1607
Hpy8I GTNNAC 5 cut(s) 58, 69, 581, 827, 1210
HpyAV CCTTC 5 cut(s) 323, 469, 640, 795, 964
HpyCH4III ACNGT 9 cut(s) 235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 6 cut(s) 848, 968, 1499, 1673, 1717, 1772
HpyF10VI GCNNNNNNNGC 1 cut(s) 1679
HpyF3I CTNAG 4 cut(s) 1047, 1222, 1317, 1795
HpySE526I ACGT 1 cut(s) 808
HspAI GCGC 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 936
KspAI GTTAAC 1 cut(s) 1210
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 4 cut(s) 11, 127, 857, 1489
Lsp1109I GCAGC 2 cut(s) 276, 1141
LweI GCATC 4 cut(s) 327, 412, 835, 955
MaeI CTAG 1 cut(s) 1073
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 7 cut(s) 130, 167, 863, 890, 1342, 1634, 1850
MbiI CCGCTC 2 cut(s) 14, 737
MboII GAAGA 7 cut(s) 259, 509, 583, 698, 701, 1088, 1206
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 2 cut(s) 1570, 1645
MhlI GDGCHC 3 cut(s) 124, 632, 1446
MlyI GAGTC 3 cut(s) 75, 292, 1214
MmeI TCCRAC 3 cut(s) 224, 749, 1788
Mph1103I ATGCAT 1 cut(s) 970
MroI TCCGGA 1 cut(s) 1003
MseI TTAA 5 cut(s) 237, 467, 500, 1209, 1809
MslI CAYNNNNRTG 1 cut(s) 1398
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 2 cut(s) 26, 1004
MspR9I CCNGG 3 cut(s) 27, 1196, 1805
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 2 cut(s) 1196, 1805
MwoI GCNNNNNNNGC 1 cut(s) 1679
NciI CCSGG 1 cut(s) 27
NlaIV GGNNCC 2 cut(s) 307, 1572
NmeAIII GCCGAG 2 cut(s) 1573, 1622
NmuCI GTSAC 2 cut(s) 863, 890
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 761
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 706, 719, 740, 1022, 1610
PflFI GACNNNGTC 1 cut(s) 1082
PkrI GCNGC 2 cut(s) 291, 1156
PleI GAGTC 3 cut(s) 75, 291, 1214
PpsI GAGTC 3 cut(s) 75, 291, 1214
Ppu21I YACGTR 1 cut(s) 809
PsiI TTATAA 2 cut(s) 696, 1259
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 1194, 1803
PspGI CCWGG 2 cut(s) 1194, 1803
PspN4I GGNNCC 2 cut(s) 307, 1572
PspXI VCTCGAGB 1 cut(s) 625
PsuI RGATCY 2 cut(s) 1570, 1645
PsyI GACNNNGTC 1 cut(s) 1082
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 4 cut(s) 219, 448, 807, 1353
RsaNI GTAC 4 cut(s) 218, 447, 806, 1352
RseI CAYNNNNRTG 1 cut(s) 1398
SacI GAGCTC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 5 cut(s) 237, 467, 500, 1209, 1809
SatI GCNGC 2 cut(s) 290, 1155
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 3 cut(s) 75, 292, 1214
ScrFI CCNGG 3 cut(s) 27, 1196, 1805
SduI GDGCHC 3 cut(s) 124, 632, 1446
SfaNI GCATC 4 cut(s) 327, 412, 835, 955
Sfr274I CTCGAG 1 cut(s) 625
SlaI CTCGAG 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 1398
SmlI CTYRAG 2 cut(s) 344, 625
SmoI CTYRAG 2 cut(s) 344, 625
SnaBI TACGTA 1 cut(s) 809
SsiI CCGC 8 cut(s) 4, 14, 617, 737, 836, 1019, 1711, 1825
SspMI CTAG 1 cut(s) 1073
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 25, 1194, 1803
TaaI ACNGT 9 cut(s) 235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
TaiI ACGT 1 cut(s) 811
TaqI TCGA 5 cut(s) 626, 944, 1242, 1292, 1579
TatI WGTACW 3 cut(s) 217, 446, 1351
TfiI GAWTC 5 cut(s) 706, 719, 740, 1022, 1610
Tru1I TTAA 5 cut(s) 237, 467, 500, 1209, 1809
Tru9I TTAA 5 cut(s) 237, 467, 500, 1209, 1809
TscAI CASTG 8 cut(s) 305, 343, 874, 964, 1087, 1377, 1531, 1774
TseFI GTSAC 2 cut(s) 863, 890
TseI GCWGC 2 cut(s) 289, 1154
Tsp45I GTSAC 2 cut(s) 863, 890
TspGWI ACGGA 3 cut(s) 118, 155, 180
TspRI CASTG 8 cut(s) 305, 343, 874, 964, 1087, 1377, 1531, 1774
Tth111I GACNNNGTC 1 cut(s) 1082
XapI RAATTY 5 cut(s) 359, 699, 1264, 1731, 1844
XceI RCATGY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 625
XspI CTAG 1 cut(s) 1073
ZrmI AGTACT 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.