Rmu_sc0007110.1_g000006

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007110.1
OG0011218
Physical Location & Seq
Reverse (-)
19964 .. 21850
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
atgcaaagctccgagcatggaagacgttccccaataagtcaagaagttttgggcgtagttactgcaaatgactgtgagtggtgccatttgcccaacaaagtccacattgatcccatgtcattaatggccatcgtccttcctgaggtcgtggatcaaactcagtccttcaataaagggaaagagacgtcaatttcagaagggaccactttacatgaaaaccaaagcacagcgagccaaatggacacattaccatctcctaatctcacctcttatcttctccacaactctcgaaccctctgtgcctctctctgctcaaacacaagctctaacgcagaattagcatggcggccacgctcagcttcctcaagcttcctgttctccttccccacaaaaccaactattgcatctcaaaattacaacctcaagtcagcttctcttcccctcacagctctcacattgccatttttcttggaccccaaggatgcatttgctgttggtggggagtttgggattttggagggaaggacgtttgctctgatacacccaattgtgatgggcgggttattcgtttacacattgtgggccgggtttttgggctggcaatggaggcgggtcaggacaatccaaaatgagattagtgagctcaagaagcaagagaagcctacccctgtcacaccagatgggacaccagttgaagcaccaccatctcctgttgctcttcaaattaagcaactcagtgaggaaaggaaggagttggtgaaagggaattaccgggatagacacttcaatgcagggtcaatactgctcgcttttggagtttttgaggcgattggtggaggagttaacacatggtttaggactggaaagctatttccgggtccccatttgtttgcaggagcaggcatcacggtgctatgggcagcagcagctgcacttgtacctgcaatgcaaaaggggaatgagacggctagaagccttcacattgcaatcaacgcgataaacgttctgcttttcatatggcagatacctactggacttgacatagtttggaaagtgtttgaattcactaaatggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

359

Amino Acids

39.47

Weight (kDa)

7.74

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 178 - 351 7.2e-45 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 995
AciI CCGC 3 cut(s) 346, 558, 610
AclI AACGTT 1 cut(s) 1002
AclWI GGATC 2 cut(s) 104, 159
AcoI YGGCCR 2 cut(s) 126, 347
AcsI RAATTY 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 579
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 5 cut(s) 169, 695, 722, 787, 1061
AluBI AGCT 9 cut(s) 9, 324, 359, 369, 431, 449, 643, 868, 929
AluI AGCT 9 cut(s) 9, 324, 359, 369, 431, 449, 643, 868, 929
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 2 cut(s) 176, 956
AlwI GGATC 2 cut(s) 104, 159
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 4 cut(s) 126, 347, 582, 1073
ApeKI GCWGC 4 cut(s) 920, 923, 926, 929
ApoI RAATTY 1 cut(s) 1061
AseI ATTAAT 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 201, 472, 582, 878
AsuC2I CCSGG 3 cut(s) 586, 773, 876
AsuHPI GGTGA 2 cut(s) 256, 769
AvaII GGWCC 3 cut(s) 201, 472, 878
AxyI CCTNAGG 1 cut(s) 141
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 4 cut(s) 916, 932, 935, 938
BccI CCATC 5 cut(s) 137, 259, 547, 674, 712
BceAI ACGGC 1 cut(s) 981
BcnI CCSGG 3 cut(s) 586, 773, 876
BcoDI GTCTC 2 cut(s) 176, 956
BfaI CTAG 1 cut(s) 969
BfuAI ACCTGC 1 cut(s) 949
BisI GCNGC 5 cut(s) 347, 921, 924, 927, 930
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 5 cut(s) 348, 922, 925, 928, 931
Bme1390I CCNGG 3 cut(s) 586, 773, 876
Bme18I GGWCC 3 cut(s) 201, 472, 878
BmgT120I GGNCC 4 cut(s) 201, 472, 582, 878
BmiI GGNNCC 5 cut(s) 83, 202, 474, 879, 880
BmrFI CCNGG 3 cut(s) 586, 773, 876
BmsI GCATC 3 cut(s) 413, 472, 912
BpiI GAAGAC 1 cut(s) 28
Bpu1102I GCTNAGC 1 cut(s) 355
BpuEI CTTGAG 3 cut(s) 349, 407, 629
BpuMI CCSGG 3 cut(s) 586, 773, 876
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 477
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 689, 865, 1036
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 4 cut(s) 455, 608, 951, 981
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 4 cut(s) 455, 608, 951, 981
BseMII CTCAG 4 cut(s) 132, 173, 369, 748
BseNI ACTGG 3 cut(s) 689, 865, 1036
BseRI GAGGAG 1 cut(s) 852
BseXI GCAGC 4 cut(s) 916, 932, 935, 938
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 4 cut(s) 128, 349, 584, 1075
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 645
BsiSI CCGG 3 cut(s) 585, 772, 875
BslFI GGGAC 3 cut(s) 214, 697, 864
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 176, 956
BsmBI CGTCTC 2 cut(s) 176, 956
BsmFI GGGAC 3 cut(s) 214, 697, 864
BsnI GGCC 4 cut(s) 128, 349, 584, 1075
Bsp1286I GDGCHC 1 cut(s) 645
Bsp143I GATC 2 cut(s) 109, 151
Bsp1720I GCTNAGC 1 cut(s) 355
BspACI CCGC 3 cut(s) 346, 558, 610
BspANI GGCC 4 cut(s) 128, 349, 584, 1075
BspCNI CTCAG 4 cut(s) 133, 172, 368, 747
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 5 cut(s) 83, 202, 474, 879, 880
BspMI ACCTGC 1 cut(s) 949
BspPI GGATC 2 cut(s) 104, 159
BspQI GCTCTTC 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 81
BsrDI GCAATG 4 cut(s) 455, 608, 951, 981
BsrI ACTGG 3 cut(s) 689, 865, 1036
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 2 cut(s) 109, 151
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 74, 910
Bst6I CTCTTC 2 cut(s) 441, 723
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 232, 599, 807, 901
BstDEI CTNAG 4 cut(s) 141, 159, 355, 734
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 995
BstKTI GATC 2 cut(s) 112, 154
BstMAI GTCTC 2 cut(s) 176, 956
BstMBI GATC 2 cut(s) 109, 151
BstMWI GCNNNNNNNGC 8 cut(s) 231, 338, 607, 649, 658, 926, 929, 992
BstSCI CCNGG 3 cut(s) 584, 771, 874
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 4 cut(s) 916, 932, 935, 938
BstV2I GAAGAC 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 128, 349, 584, 1075
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 742
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 4 cut(s) 232, 599, 807, 901
CaiI CAGNNNCTG 1 cut(s) 929
Cfr13I GGNCC 4 cut(s) 201, 472, 582, 878
Csp6I GTAC 1 cut(s) 938
CviAII CATG 5 cut(s) 17, 115, 212, 342, 849
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 4 cut(s) 141, 159, 355, 734
DpnI GATC 2 cut(s) 111, 153
DpnII GATC 2 cut(s) 109, 151
DraIII CACNNNGTG 1 cut(s) 579
EaeI YGGCCR 2 cut(s) 126, 347
Eam1104I CTCTTC 2 cut(s) 441, 723
EarI CTCTTC 2 cut(s) 441, 723
Ecl136II GAGCTC 1 cut(s) 643
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 3 cut(s) 201, 472, 878
Eco53kI GAGCTC 1 cut(s) 643
Eco81I CCTNAGG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 643
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 1061
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 2 cut(s) 176, 956
FaeI CATG 5 cut(s) 20, 118, 215, 345, 852
FaiI YATR 9 cut(s) 18, 116, 213, 343, 850, 916, 1016, 1018, 1043
FaqI GGGAC 3 cut(s) 214, 697, 864
FatI CATG 5 cut(s) 16, 114, 211, 341, 848
FauI CCCGC 2 cut(s) 551, 603
FauNDI CATATG 1 cut(s) 1016
Fnu4HI GCNGC 5 cut(s) 347, 921, 924, 927, 930
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 5 cut(s) 347, 921, 924, 927, 930
FspBI CTAG 1 cut(s) 969
GluI GCNGC 5 cut(s) 347, 921, 924, 927, 930
HaeIII GGCC 4 cut(s) 128, 349, 584, 1075
HapII CCGG 3 cut(s) 585, 772, 875
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 5 cut(s) 20, 118, 215, 345, 852
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 367
HpaI GTTAAC 1 cut(s) 844
HpaII CCGG 3 cut(s) 585, 772, 875
HphI GGTGA 2 cut(s) 256, 769
Hpy166II GTNNAC 3 cut(s) 103, 571, 844
Hpy188I TCNGA 3 cut(s) 13, 196, 537
Hpy188III TCNNGA 5 cut(s) 41, 140, 288, 616, 646
Hpy8I GTNNAC 3 cut(s) 103, 571, 844
HpyAV CCTTC 7 cut(s) 146, 175, 191, 391, 516, 742, 986
HpyCH4III ACNGT 2 cut(s) 74, 910
HpyCH4IV ACGT 4 cut(s) 25, 185, 527, 1002
HpyF10VI GCNNNNNNNGC 8 cut(s) 231, 338, 607, 649, 658, 926, 929, 992
HpyF3I CTNAG 4 cut(s) 141, 159, 355, 734
HpySE526I ACGT 4 cut(s) 25, 185, 527, 1002
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 5 cut(s) 20, 118, 215, 345, 852
KflI GGGWCCC 1 cut(s) 878
KspAI GTTAAC 1 cut(s) 844
Kzo9I GATC 2 cut(s) 109, 151
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 2 cut(s) 14, 896
Lsp1109I GCAGC 4 cut(s) 916, 932, 935, 938
LweI GCATC 3 cut(s) 413, 472, 912
MaeI CTAG 1 cut(s) 969
MaeII ACGT 4 cut(s) 25, 185, 527, 1002
MaeIII GTNAC 2 cut(s) 58, 670
MalI GATC 2 cut(s) 111, 153
MboI GATC 2 cut(s) 109, 151
MboII GAAGA 4 cut(s) 33, 266, 428, 710
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 645
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 7 cut(s) 189, 335, 412, 546, 723, 766, 1061
MluNI TGGCCA 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 128
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 122, 726, 843
MslI CAYNNNNRTG 2 cut(s) 786, 908
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 3 cut(s) 585, 772, 875
MspR9I CCNGG 3 cut(s) 586, 773, 876
MunI CAATTG 1 cut(s) 546
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 8 cut(s) 231, 338, 607, 649, 658, 926, 929, 992
NciI CCSGG 3 cut(s) 586, 773, 876
NdeI CATATG 1 cut(s) 1016
NdeII GATC 2 cut(s) 109, 151
NlaIII CATG 5 cut(s) 20, 118, 215, 345, 852
NlaIV GGNNCC 5 cut(s) 83, 202, 474, 879, 880
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 999
PdmI GAANNNNTTC 1 cut(s) 25
PkrI GCNGC 5 cut(s) 348, 922, 925, 928, 931
PpuMI RGGWCCY 1 cut(s) 878
PshBI ATTAAT 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 645
Psp1406I AACGTT 1 cut(s) 1002
Psp5II RGGWCCY 1 cut(s) 878
PspN4I GGNNCC 5 cut(s) 83, 202, 474, 879, 880
PspPI GGNCC 4 cut(s) 201, 472, 582, 878
PspPPI RGGWCCY 1 cut(s) 878
PstNI CAGNNNCTG 1 cut(s) 929
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
RseI CAYNNNNRTG 2 cut(s) 786, 908
SacI GAGCTC 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 3 cut(s) 122, 726, 843
SatI GCNGC 5 cut(s) 347, 921, 924, 927, 930
Sau3AI GATC 2 cut(s) 109, 151
Sau96I GGNCC 4 cut(s) 201, 472, 582, 878
ScrFI CCNGG 3 cut(s) 586, 773, 876
SduI GDGCHC 1 cut(s) 645
SfaNI GCATC 3 cut(s) 413, 472, 912
SinI GGWCC 3 cut(s) 201, 472, 878
SmiMI CAYNNNNRTG 2 cut(s) 786, 908
SmlI CTYRAG 3 cut(s) 364, 422, 644
SmoI CTYRAG 3 cut(s) 364, 422, 644
Sse9I AATT 7 cut(s) 189, 335, 412, 546, 723, 766, 1061
SsiI CCGC 3 cut(s) 346, 558, 610
SspMI CTAG 1 cut(s) 969
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 3 cut(s) 584, 771, 874
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 74, 910
TaiI ACGT 4 cut(s) 28, 188, 530, 1005
TaqI TCGA 1 cut(s) 289
TasI AATT 7 cut(s) 189, 335, 412, 546, 723, 766, 1061
TauI GCSGC 1 cut(s) 349
Tru1I TTAA 3 cut(s) 122, 726, 843
Tru9I TTAA 3 cut(s) 122, 726, 843
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 4 cut(s) 920, 923, 926, 929
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 2 cut(s) 228, 1003
TspRI CASTG 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 201, 472, 878
VspI ATTAAT 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 1 cut(s) 969
ZraI GACGTC 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.