Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007189.1

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Reverse (-)

37502 .. 41712

Gene Structure 4211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggaaactaaattgaaaagtggaaccactcttgtcgttgaccggtattcttattctggggtggctttctcatccgccaaaggactggacatggaatggtgtaaggctcctgagattgggttgttggctccagatgttgttctgtaccttgacataccacctgagaaagctgcagaaagagggggttatggaggtgagagatatgagcagcttgaatttcagaagaaagttggccaaagatataaggacctccgcagtgccaattggaaggtcatagatgcttgttcaaccatggaggaagttgagaagcagttgcaagagatagtattggattgtgatcgaagcctacaagtcgacgaagaatggatctttatccatcaccgcaacccaatggcgccaccaaagatcctgtatgtagccaaatacggtacccaggttgaaacttccgtcaaagagctctcacctataccgttttcgaatccgatggagttagtgggacagtgcttggagttggtttgttttctggacgcaatcgaccaaaagttttacatctataacattactacccaaacgattgaatcacaaattgatcaacctgaccatcgacttgagttttcaacagatgccgtatatggctttgagcttgcaaattccgagggctttaagattctggagatgccatatccaccaatgatgaatgaagctcaacacctgggtataccttacctccatatgtataacacttttgtggatcatgctgtctttgttccaaagcatggcctactgttctggaaagcttatgttaatcataaagatgttctggttgggtatgatcttattgatgactccttgaggacattcaaggctccagacttcgtggattttgaaacatcatgtcaagaattgtttgttgattttgtgtttcgaactatcttttatgtgtattatgttctagcgatgcatatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

322

Amino Acids

37.18

Weight (kDa)

4.84

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	2 - 104	1.2e-21	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	394, 428
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccI	GTMKAC	2 cut(s)	354, 718
AciI	CCGC	3 cut(s)	75, 253, 382
AclWI	GGATC	3 cut(s)	374, 400, 759
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	215, 649
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	2 cut(s)	146, 430
AfiI	CCNNNNNNNGG	2 cut(s)	116, 776
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	8 cut(s)	16, 215, 288, 440, 578, 618, 862, 887
AjnI	CCWGG	2 cut(s)	432, 711
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	6 cut(s)	170, 211, 457, 643, 704, 797
AluI	AGCT	6 cut(s)	170, 211, 457, 643, 704, 797
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	374, 400, 759
AoxI	GGCC	2 cut(s)	232, 778
ApeKI	GCWGC	2 cut(s)	170, 208
ApoI	RAATTY	2 cut(s)	215, 649
AsiGI	ACCGGT	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	206, 371, 453
AsuII	TTCGAA	2 cut(s)	476, 925
AvaII	GGWCC	1 cut(s)	247
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	2 cut(s)	394, 428
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	157, 220
BccI	CCATC	3 cut(s)	384, 478, 609
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	2 cut(s)	434, 713
BclI	TGATCA	1 cut(s)	589
BfaI	CTAG	1 cut(s)	953
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	2 cut(s)	171, 209
BlsI	GCNGC	2 cut(s)	172, 210
Bme1390I	CCNGG	2 cut(s)	434, 713
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	6 cut(s)	25, 108, 129, 396, 430, 867
BmrFI	CCNGG	2 cut(s)	434, 713
BmsI	GCATC	4 cut(s)	268, 613, 666, 948
BpmI	CTGGAG	3 cut(s)	114, 692, 852
Bpu14I	TTCGAA	2 cut(s)	476, 925
BpuEI	CTTGAG	2 cut(s)	629, 871
BsaBI	GATNNNNATC	2 cut(s)	336, 371
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	291, 432, 654, 712
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 776
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	90
Bse8I	GATNNNNATC	2 cut(s)	336, 371
BseBI	CCWGG	2 cut(s)	434, 713
BseDI	CCNNGG	4 cut(s)	291, 432, 654, 712
BseGI	GGATG	1 cut(s)	71
BseJI	GATNNNNATC	2 cut(s)	336, 371
BseLI	CCNNNNNNNGG	2 cut(s)	116, 776
BseMII	CTCAG	2 cut(s)	102, 153
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	157, 220
BshFI	GGCC	2 cut(s)	234, 780
BshNI	GGYRCC	2 cut(s)	394, 428
BshTI	ACCGGT	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	116, 776
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	234, 780
Bsp119I	TTCGAA	2 cut(s)	476, 925
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	3 cut(s)	75, 253, 382
BspANI	GGCC	2 cut(s)	234, 780
BspCNI	CTCAG	2 cut(s)	103, 154
BspLI	GGNNCC	6 cut(s)	25, 108, 129, 396, 430, 867
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	3 cut(s)	374, 400, 759
BspT104I	TTCGAA	2 cut(s)	476, 925
BspT107I	GGYRCC	2 cut(s)	394, 428
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	291, 432, 654, 712
BssMI	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
BssNAI	GTATAC	1 cut(s)	719
BssNI	GRCGYC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	434, 713
Bst4CI	ACNGT	4 cut(s)	428, 471, 501, 786
BstACI	GRCGYC	1 cut(s)	395
BstBI	TTCGAA	2 cut(s)	476, 925
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	2 cut(s)	111, 162
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	6 cut(s)	340, 369, 408, 592, 754, 835
BstMBI	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
BstNI	CCWGG	2 cut(s)	434, 713
BstSCI	CCNGG	2 cut(s)	432, 711
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	157, 220
BstX2I	RGATCY	2 cut(s)	366, 405
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	2 cut(s)	366, 405
BstZ17I	GTATAC	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	234, 780
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 506
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	145, 429
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	5 cut(s)	91, 292, 755, 776, 894
CviQI	GTAC	2 cut(s)	145, 429
DdeI	CTNAG	2 cut(s)	111, 162
DinI	GGCGCC	1 cut(s)	396
DpnI	GATC	6 cut(s)	339, 368, 407, 591, 753, 834
DpnII	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
EaeI	YGGCCR	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	432, 711
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	963
EcoT38I	GRGCYC	1 cut(s)	459
EgeI	GGCGCC	1 cut(s)	396
EheI	GGCGCC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	5 cut(s)	94, 295, 758, 779, 897
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	5 cut(s)	90, 291, 754, 775, 893
FauNDI	CATATG	1 cut(s)	732
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	354, 718
Fnu4HI	GCNGC	2 cut(s)	171, 209
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	171, 209
FspBI	CTAG	1 cut(s)	953
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	171, 209
GsuI	CTGGAG	3 cut(s)	114, 692, 852
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	234, 780
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	5 cut(s)	94, 295, 758, 779, 897
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	2 cut(s)	40, 355
HindII	GTYRAC	2 cut(s)	40, 355
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	4 cut(s)	478, 578, 667, 845
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	3 cut(s)	206, 371, 453
Hpy166II	GTNNAC	3 cut(s)	40, 355, 719
Hpy188I	TCNGA	3 cut(s)	222, 483, 655
Hpy188III	TCNNGA	7 cut(s)	110, 131, 524, 671, 790, 869, 899
Hpy8I	GTNNAC	3 cut(s)	40, 355, 719
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	428, 471, 501, 786
HpyCH4V	TGCA	4 cut(s)	173, 316, 647, 961
HpyF3I	CTNAG	2 cut(s)	111, 162
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	94, 295, 758, 779, 897
HspAI	GCGC	1 cut(s)	395
KasI	GGCGCC	1 cut(s)	394
KpnI	GGTACC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
LmnI	GCTCC	3 cut(s)	112, 133, 871
Lsp1109I	GCAGC	2 cut(s)	157, 220
LweI	GCATC	4 cut(s)	268, 613, 666, 948
MaeI	CTAG	1 cut(s)	953
MalI	GATC	6 cut(s)	339, 368, 407, 591, 753, 834
MboI	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
MboII	GAAGA	2 cut(s)	235, 371
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	2 cut(s)	366, 405
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	6 cut(s)	11, 215, 262, 585, 649, 902
MluNI	TGGCCA	1 cut(s)	234
Mly113I	GGCGCC	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	839
MnlI	CCTC	7 cut(s)	173, 185, 260, 289, 649, 737, 846
Mox20I	TGGCCA	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	963
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	2 cut(s)	663, 804
MslI	CAYNNNNRTG	2 cut(s)	746, 813
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	434, 713
MunI	CAATTG	1 cut(s)	262
MvaI	CCWGG	2 cut(s)	434, 713
NarI	GGCGCC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
NlaIII	CATG	5 cut(s)	94, 295, 758, 779, 897
NlaIV	GGNNCC	6 cut(s)	25, 108, 129, 396, 430, 867
NsiI	ATGCAT	1 cut(s)	963
NspV	TTCGAA	2 cut(s)	476, 925
OliI	CACNNNNGTG	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	478, 578, 667
PflMI	CCANNNNNTGG	1 cut(s)	776
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	172, 210
PleI	GAGTC	1 cut(s)	839
PluTI	GGCGCC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	839
PpuMI	RGGWCCY	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	432, 711
PspGI	CCWGG	2 cut(s)	432, 711
PspN4I	GGNNCC	6 cut(s)	25, 108, 129, 396, 430, 867
PspPI	GGNCC	1 cut(s)	247
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	366, 405
RsaI	GTAC	2 cut(s)	146, 430
RsaNI	GTAC	2 cut(s)	145, 429
RseI	CAYNNNNRTG	2 cut(s)	746, 813
SacI	GAGCTC	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	663, 804
SatI	GCNGC	2 cut(s)	171, 209
Sau3AI	GATC	6 cut(s)	337, 366, 405, 589, 751, 832
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	2 cut(s)	434, 713
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	4 cut(s)	268, 613, 666, 948
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	396
SfuI	TTCGAA	2 cut(s)	476, 925
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	746, 813
SmlI	CTYRAG	2 cut(s)	608, 850
SmoI	CTYRAG	2 cut(s)	608, 850
Sse9I	AATT	6 cut(s)	11, 215, 262, 585, 649, 902
SsiI	CCGC	3 cut(s)	75, 253, 382
SspDI	GGCGCC	1 cut(s)	394
SspMI	CTAG	1 cut(s)	953
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	432, 711
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	428, 471, 501, 786
TaqI	TCGA	6 cut(s)	340, 354, 476, 534, 604, 925
TasI	AATT	6 cut(s)	11, 215, 262, 585, 649, 902
TfiI	GAWTC	3 cut(s)	478, 578, 667
Tru1I	TTAA	2 cut(s)	663, 804
Tru9I	TTAA	2 cut(s)	663, 804
TscAI	CASTG	2 cut(s)	262, 506
TseI	GCWGC	2 cut(s)	170, 208
TspDTI	ATGAA	2 cut(s)	710, 714
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	262, 506
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	215, 649
XmiI	GTMKAC	2 cut(s)	354, 718
XspI	CTAG	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.