Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007295.1

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3505

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

tccacattgtcatatcctagggacgttgttgttgattgtgctggagataatttaaacaagaccttccaactggaagaaagaacagctttgtttaaggcagctgaaaatgccatagttaatgtaggtcttgataaagacattgatagacatgttttgcaagatgggggatttggatttgggtatagggtgtatggttatatggtgaaggataaggtgtcgccggatttgtttgcttttacttgcttgattgatgggtattgtaaggctggtaatttggaggttgcatttgaattgctagagggaatgaagaaatcgttatttttaccgaatgtggtgacttatagtgctttgattgatgggctgtgcaagaatgggaagttggaaagagctaagcgtttgttttgtgaaatggtggaacatggggttcggcctagttcagcggtttacacttcaatgatagatgggcatttcaagaaaagaaatgtagaagaggccatgaagtatatgagtaaaatatgggatggaagggttagtcttgatgccgctgcatatggagtggtggtctcaggcctctgtaataatggtcagttcgataatgcgatgcgggttgttacagatgatttcgccatgagtggtttttctccagataagatgttgttgacgaccattatggatgtatgtttcaaagctggcaatttgaaagcaggtttgggtgtctacagattgttagcaaagggttttgaaccagatgctttggtgctttcagctttgatggacggcttatgcaagcatgggcatttcaaggaggcaagaggctacttttgcaaggaaaaggctaatgagatttcatatactgtgctcattgatgggatgtgtaaggaagaaaactttagtgatgttgagacgatcttcagtgatatgttgggctatgcagacaatcttcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

315

Amino Acids

34.9

Weight (kDa)

5.38

Isoelectric Point (pI)

19.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	67 - 119	3.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	72 - 103	2.1e-11	PPR repeat
PPR_2	PF13041	74 - 123	1.4e-17	PPR repeat family
PPR	PF01535	78 - 104	3.9e-07	PPR repeat
PPR_1	PF12854	108 - 138	7.2e-14	PPR repeat
PPR_2	PF13041	109 - 155	1.1e-16	PPR repeat family
PPR_3	PF13812	109 - 153	2.8e-06	Pentatricopeptide repeat domain
PPR	PF01535	112 - 142	8.1e-11	PPR repeat
TPR_24	PF23276	113 - 203	1.6e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	127 - 244	3.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	144 - 193	2.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	3 cut(s)	440, 543, 604
AcuI	CTGAAG	2 cut(s)	895, 926
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	7 cut(s)	290, 453, 472, 685, 700, 743, 802
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 692, 724
AluBI	AGCT	5 cut(s)	86, 101, 389, 689, 767
AluI	AGCT	5 cut(s)	86, 101, 389, 689, 767
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	568, 896
AoxI	GGCC	3 cut(s)	428, 492, 568
ApeKI	GCWGC	2 cut(s)	98, 545
AspA2I	CCTAGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	214, 346
AvrII	CCTAGG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	110, 532
BccI	CCATC	7 cut(s)	155, 245, 350, 455, 515, 766, 860
BceAI	ACGGC	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	568, 896
BfaI	CTAG	3 cut(s)	18, 296, 432
BfmI	CTRYAG	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	695
BisI	GCNGC	3 cut(s)	99, 543, 546
BlnI	CCTAGG	1 cut(s)	17
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	100, 544, 547
BmsI	GCATC	3 cut(s)	529, 591, 739
BpmI	CTGGAG	2 cut(s)	63, 627
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	526, 679, 876
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	110, 532
BshFI	GGCC	3 cut(s)	430, 494, 570
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	568, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	430, 494, 570
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	1 cut(s)	906
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	440, 543, 604
BspANI	GGCC	3 cut(s)	430, 494, 570
BspCNI	CTCAG	1 cut(s)	578
BspMI	ACCTGC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	856
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	691, 788
BstDEI	CTNAG	2 cut(s)	390, 565
BstF5I	GGATG	3 cut(s)	526, 679, 876
BstKTI	GATC	1 cut(s)	909
BstMAI	GTCTC	2 cut(s)	568, 896
BstMBI	GATC	1 cut(s)	906
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 822
BstNSI	RCATGY	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	718
BstV1I	GCAGC	2 cut(s)	110, 532
BsuRI	GGCC	3 cut(s)	430, 494, 570
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	526, 679, 876
BtsIMutI	CAGTG	1 cut(s)	919
BveI	ACCTGC	1 cut(s)	695
Cac8I	GCNNGC	2 cut(s)	691, 788
CviAII	CATG	5 cut(s)	149, 419, 496, 628, 791
DdeI	CTNAG	2 cut(s)	390, 565
DpnI	GATC	1 cut(s)	908
DpnII	GATC	1 cut(s)	906
DraI	TTTAAA	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	895, 926
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	5 cut(s)	152, 422, 499, 631, 794
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	5 cut(s)	148, 418, 495, 627, 790
FauI	CCCGC	1 cut(s)	597
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	99, 543, 546
FokI	GGATG	3 cut(s)	533, 686, 883
Fsp4HI	GCNGC	3 cut(s)	99, 543, 546
FspBI	CTAG	3 cut(s)	18, 296, 432
GluI	GCNGC	3 cut(s)	99, 543, 546
GsuI	CTGGAG	2 cut(s)	63, 627
HaeIII	GGCC	3 cut(s)	430, 494, 570
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	5 cut(s)	152, 422, 499, 631, 794
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	214, 346
Hpy166II	GTNNAC	3 cut(s)	445, 660, 718
Hpy188III	TCNNGA	4 cut(s)	128, 472, 536, 644
Hpy8I	GTNNAC	3 cut(s)	445, 660, 718
HpyAV	CCTTC	3 cut(s)	73, 199, 519
HpyCH4III	ACNGT	1 cut(s)	856
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	7 cut(s)	157, 284, 366, 548, 786, 825, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 822
HpyF3I	CTNAG	2 cut(s)	390, 565
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	152, 422, 499, 631, 794
Kzo9I	GATC	1 cut(s)	906
LpnPI	CCDG	9 cut(s)	27, 56, 234, 252, 552, 657, 675, 690, 759
Lsp1109I	GCAGC	2 cut(s)	110, 532
LweI	GCATC	3 cut(s)	529, 591, 739
MaeI	CTAG	3 cut(s)	18, 296, 432
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	334, 610
MalI	GATC	1 cut(s)	908
MboI	GATC	1 cut(s)	906
MboII	GAAGA	6 cut(s)	86, 319, 500, 893, 901, 932
MhlI	GDGCHC	1 cut(s)	861
MluCI	AATT	4 cut(s)	49, 271, 290, 694
MmeI	TCCRAC	2 cut(s)	91, 360
MnlI	CCTC	6 cut(s)	271, 292, 484, 581, 799, 806
MseI	TTAA	3 cut(s)	53, 93, 117
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	3 cut(s)	101, 440, 545
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	107, 822
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	906
NlaIII	CATG	5 cut(s)	152, 422, 499, 631, 794
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	570
PciI	ACATGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	100, 544, 547
PscI	ACATGT	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	53, 93, 117
SatI	GCNGC	3 cut(s)	99, 543, 546
Sau3AI	GATC	1 cut(s)	906
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	529, 591, 739
SfcI	CTRYAG	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	49, 271, 290, 694
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	3 cut(s)	440, 543, 604
SspMI	CTAG	3 cut(s)	18, 296, 432
StuI	AGGCCT	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	856
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	49, 271, 290, 694
TauI	GCSGC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	53, 93, 117
Tru9I	TTAA	3 cut(s)	53, 93, 117
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	98, 545
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	320, 512, 837
TspRI	CASTG	1 cut(s)	919
XceI	RCATGY	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	3 cut(s)	18, 296, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.