Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007300.1

Orthogroup ID

OG0006161

Physical Location & Seq

Genomic Coordinates Forward (+)

88052 .. 101119

Gene Structure 13068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3261 bp

atggcgcagcagcagcagcagcctccgtcggtcccgccgcaattgccgaccgccggcgccagcgggcccgtcggaggcgtccaggtgcggtgcgccggctgccacaagatcctcaccatcgcggccggggtcaccgaattcgtctgcggcacgtgccaattgccgcagatgcttccgccggagctgatgagccgggcccaggcccataaccagcccaacaagggcccgcttcccccgcccccgcccccgcggccgcagccgcagcacgtggccgcccacggcgtcgatcctacgaagatccagctcccctgcgccaactgcaaggcgattctcaatgtgcctcatggactctctcggtttcagtgccctcagtgccatgttgaccttgccgtcgatgtgtccaagctcaaagagttcttgctgccaccgccttccgaggaggtcaacgaggttgccattgaagtggagcgagaagaagatgaaggtggcctggccggggaaacatttacagattatcgccctccaaagctgtccattggacctcctcatccagatcccgttgtggaaacatcatccctgtcggctgtgcagccacctgagcccacttacgatctaacaatcaaggatgatttggaaaattcaaaggctttatcatgtttgcagattgagacactggtttatgcctgtcagagacacctccagcaccttccaagtggtgttagggctggattctttgttggagatggagctggtgtgggtaaaggtagaacaattgcagggttaatttgggaaaattggcaccatgggaggagaaaggcagtgtggatttctgttggttcagacttgaagtttgatgcaagaagagacttagatgatgtaggcgcaacttgtatagaagttcatgctttgaacaagctgccatattctaagcttgattccaagtctgttggcatcaaggagggagttatattcctcacatacagcagccttatagcatcttctgagaaaggtcgttcacgcatgcagcagcttgtgcagtggtgtggatcaggatatgatggtcttatcgtctttgacgagtgtcacaaagccaaaaatttgatacctgaagctggaagtcagccaacacgaactggtgaagcagttcttgacattcaggctcgactgcctgaagctcgggttatttattgctcggcaactggtgcatcagaaccacgcaacttgggttacatggttcggcttggtctttggggccctggaacatctttttctgagttccgtgaatttctaggtgctcttgagaaaggaggtgttggtgcacttgaacttgttgccatggacatgaaagcaagggggatgtatgtctgtcgtactcttagctataaaggagcagagtttgacgttgttgaggcaccactagaagatgaaatgatggaaatgtacaaaaaagcagcagaattttggacagagctgcgagtcgaaatactaacagctactgcctatctcactaatgaaaagcccatttctagtcaagtctggcgattatattgggctagtcatcagcgtttctttagacatatgtgtatgtcggctaaggttcctgctgctgtaagactagcgaagaaagcattgatggatgacaagtgtgtcgtaattggccttcagagtactggagaggcacgaactgaagaagctgtgactaaatatggtcttgagcttgatgattttatttcgggacctcgagaactgttgctgaaatttgttgaagaaaactatcctttgcctgaaaagcctgatcctgtcacaggagaagaaagtgtaaaggagcttcaacggaagaggcactcagcaagtcctggtgtttcgatgaaagggagagtgaggaaagttgcaaaagtgcaaccgccaattgataacgaaagtgacgaagaatctgaaactgattctgctgttgaatctactgaatcagatgatgagtttcaaatctgtgaaatctgcaatgctgaaacggaaagaaagaaattgctccactgttcctgttgtggccaactggtccatgctgaatgccttatcccacctgtgatagatgaggtatcagaagattggtcttgtcattcgtgcaaggaaaaaacagatgaatatcttcaacggagagagcagtatatagctgaattgaagaagaggtatgaagcagctttggagcgtaagtcaaaaattctggggataattcgttccttggatcttccaaacaatcctttggacgatatcattgatcaggtagaagccacacacactaagttggtggcaaaatttggattatctatgctgattgccagcatgctgttccttttaactatattctgtgcttctgttgatgatatccctgtatgtgatgtagctaaagattctggcaagctctctggccgtgtagctgattcagacatgcatgacgtcggacgtttcctcaatcggattttaggattgccacctaaagtacaaaataggctgttcgagttatttgttagtattttggatcttcttgtccataatgcacgcattgaaggaaatcttgactctgggattgttgatatgaaagctaatgttatagagctacaaggaactccaaagactgtccatgttgacgaaatgtctggagcttcaactgtgctcttcacttttaccctggatcgtggcatcacatgggagtctgcaagtgccatgcttgaaggtaaacaagaggaggggcttagttgtgcccatgatggcttctatgaatctagaagggagtggatggggaggcgccataccatattagcctttgaaagttctacttctgggtcctataagatagtccgtccggcagttggagagtcagtgagagaaatgtctctgtctgagctaaaaagcaaatacagaagaacatcatcgttggagaaggctcgcagcggttggaatgatgaatatgaagtttcatccaaacagtgcatgcatggtcccaagtgtaaggttggcagcttctgtactgttggcagaagactgcaggaagtaaatgtattaggtggtctcattcttcctgtatggggcacaattgagaaagctctttctaagcagtcccggcaaagccacaggcggctacgtgttgtgcgtatagaaaccacaacagataaccagagaattgttggtctgtttgtccccaatgcagctgttgaagccgtacttcaagattttgcatgggttcaagaaattgaagattcacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

1086

Amino Acids

120.17

Weight (kDa)

5.73

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_FGT1_1	PF23547	27 - 61	3e-18	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_1	PF23547	100 - 129	5.4e-10	FORGETTER1 first zinc ribbon domain
Zn_ribbon_FGT1_2	PF23548	100 - 133	3.2e-17	FORGETTER1 second zinc ribbon domain
AAA_34	PF13872	182 - 482	1.3e-134	P-loop containing NTP hydrolase pore-1
Helicase_C_4	PF13871	806 - 863	1.1e-10	C-terminal domain on Strawberry notch homologue
SBNO	PF25373	900 - 1012	2e-18	SBNO alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79350
fragaria_vesca	FvH4_3g13920 FvH4_3g13920 FvH4_3g13920 FvH4_3g13920
malus_domestica	MD05G1239900.v1.1 MD10G1218000.v1.1
prunus_persica	Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1 Prupe.4G126100_v2.0.a1
pyrus_communis	pycom05g21600 pycom10g18380
rosa_chinensis	RchiOBHm_Chr5g0023151
rosa_laevigata	RLG00000032703
rosa_multiflora	Rmu_co8366291.1_g000001 Rmu_sc0007300.1_g000019 Rmu_sc0015109.1_g000002 Rmu_sc0033377.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056190
rosa_rugosa	Rorug05G0077600
rosa_samantha	Rh5AG163600 Rh5BG163000 Rh5CG177800 Rh5DG164200
rosa_wichuraiana	Rw5G014760 Rw5G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	389, 1646
AatII	GACGTC	1 cut(s)	2454
AccB1I	GGYRCC	4 cut(s)	56, 798, 1411, 2799
AccII	CGCG	2 cut(s)	122, 250
AclWI	GGATC	9 cut(s)	103, 281, 292, 548, 1054, 1790, 2247, 2541, 2694
AcoI	YGGCCR	6 cut(s)	123, 251, 270, 492, 2044, 2422
AcsI	RAATTY	8 cut(s)	137, 637, 1096, 1283, 1457, 1757, 2214, 2309
AcuI	CTGAAG	4 cut(s)	1128, 1191, 1646, 1707
AcvI	CACGTG	2 cut(s)	153, 268
AcyI	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
AfaI	GTAC	6 cut(s)	1372, 1442, 1669, 2496, 3022, 3216
AfiI	CCNNNNNNNGG	9 cut(s)	53, 74, 199, 221, 496, 1112, 1805, 2864, 3080
AflIII	ACRYGT	1 cut(s)	3136
AhdI	GACNNNNNGTC	1 cut(s)	2647
AjnI	CCWGG	6 cut(s)	81, 198, 489, 1255, 1855, 2682
AloI	GAACNNNNNNTCC	2 cut(s)	2215, 2247
Alw21I	GWGCWC	3 cut(s)	1297, 1321, 2670
Alw26I	GTCTC	5 cut(s)	662, 685, 858, 2892, 3068
Alw44I	GTGCAC	1 cut(s)	1317
AlwI	GGATC	9 cut(s)	103, 281, 292, 548, 1054, 1790, 2247, 2541, 2694
AlwNI	CAGNNNCTG	2 cut(s)	1496, 3018
Ama87I	CYCGRG	2 cut(s)	1176, 1740
ApaI	GGGCCC	4 cut(s)	69, 199, 227, 1256
ApaLI	GTGCAC	1 cut(s)	1317
ApoI	RAATTY	8 cut(s)	137, 637, 1096, 1283, 1457, 1757, 2214, 2309
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
Asp700I	GAANNNNTTC	2 cut(s)	1143, 2142
AspLEI	GCGC	6 cut(s)	7, 59, 95, 314, 884, 2802
AsuC2I	CCSGG	4 cut(s)	127, 194, 496, 3115
AsuHPI	GGTGA	3 cut(s)	106, 124, 1148
AvaI	CYCGRG	2 cut(s)	1176, 1740
AvaII	GGWCC	6 cut(s)	31, 539, 1736, 2053, 2838, 2993
BaeGI	GKGCMC	8 cut(s)	69, 199, 227, 368, 1256, 1321, 2758, 3086
BalI	TGGCCA	1 cut(s)	2046
BanI	GGYRCC	4 cut(s)	56, 798, 1411, 2799
BanII	GRGCYC	5 cut(s)	69, 199, 227, 603, 1256
BarI	GAAGNNNNNNTAC	4 cut(s)	1644, 1676, 1812, 1844
BbrPI	CACGTG	2 cut(s)	153, 268
BbsI	GAAGAC	1 cut(s)	3040
Bbv12I	GWGCWC	3 cut(s)	1297, 1321, 2670
BccI	CCATC	7 cut(s)	125, 737, 1052, 1426, 1627, 2756, 2785
BceAI	ACGGC	4 cut(s)	295, 374, 2409, 3197
BciT130I	CCWGG	6 cut(s)	83, 200, 491, 1257, 1857, 2684
BclI	TGATCA	1 cut(s)	2272
BcnI	CCSGG	4 cut(s)	127, 194, 496, 3115
BcoDI	GTCTC	5 cut(s)	662, 685, 858, 2892, 3068
BfaI	CTAG	6 cut(s)	1289, 1418, 1527, 1554, 1616, 2778
BfmI	CTRYAG	1 cut(s)	3038
BfoI	RGCGCY	2 cut(s)	60, 2803
BglI	GCCNNNNNGGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	1669
Bme18I	GGWCC	6 cut(s)	31, 539, 1736, 2053, 2838, 2993
BmeRI	GACNNNNNGTC	1 cut(s)	2647
BmeT110I	CYCGRG	2 cut(s)	1176, 1740
BmsI	GCATC	6 cut(s)	159, 844, 960, 1004, 1214, 2703
BoxI	GACNNNNGTC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	3040
BpmI	CTGGAG	3 cut(s)	683, 1692, 2673
Bpu10I	CCTNAGC	2 cut(s)	597, 1593
BpuEI	CTTGAG	2 cut(s)	1319, 1733
BpuMI	CCSGG	4 cut(s)	127, 194, 496, 3115
BsaAI	YACGTR	3 cut(s)	153, 268, 3137
BsaBI	GATNNNNATC	1 cut(s)	2139
BsaHI	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
BsaI	GGTCTC	1 cut(s)	3068
BsaXI	ACNNNNNCTCC	6 cut(s)	738, 768, 2192, 2222, 2859, 2889
Bsc4I	CCNNNNNNNGG	9 cut(s)	53, 74, 199, 221, 496, 1112, 1805, 2864, 3080
Bse118I	RCCGGY	2 cut(s)	53, 95
Bse1I	ACTGG	5 cut(s)	678, 1138, 1204, 1675, 2055
Bse3DI	GCAATG	1 cut(s)	2005
Bse8I	GATNNNNATC	1 cut(s)	2139
BseBI	CCWGG	6 cut(s)	83, 200, 491, 1257, 1857, 2684
BseGI	GGATG	7 cut(s)	547, 572, 631, 1362, 1642, 2796, 2972
BseJI	GATNNNNATC	1 cut(s)	2139
BseLI	CCNNNNNNNGG	9 cut(s)	53, 74, 199, 221, 496, 1112, 1805, 2864, 3080
BseMI	GCAATG	1 cut(s)	2005
BseMII	CTCAG	6 cut(s)	383, 588, 993, 1263, 1860, 2886
BseNI	ACTGG	5 cut(s)	678, 1138, 1204, 1675, 2055
BseRI	GAGGAG	4 cut(s)	452, 534, 823, 2753
BseSI	GKGCMC	8 cut(s)	69, 199, 227, 368, 1256, 1321, 2758, 3086
BseX3I	CGGCCG	2 cut(s)	123, 251
BsgI	GTGCAG	2 cut(s)	608, 1055
Bsh1236I	CGCG	2 cut(s)	122, 250
Bsh1285I	CGRYCG	3 cut(s)	51, 126, 254
BshNI	GGYRCC	4 cut(s)	56, 798, 1411, 2799
BsiEI	CGRYCG	3 cut(s)	51, 126, 254
BsiHKAI	GWGCWC	3 cut(s)	1297, 1321, 2670
BsiHKCI	CYCGRG	2 cut(s)	1176, 1740
BsiSI	CCGG	8 cut(s)	54, 96, 126, 179, 193, 495, 2858, 3115
BslFI	GGGAC	5 cut(s)	17, 1749, 2979, 3097, 3176
BslI	CCNNNNNNNGG	9 cut(s)	53, 74, 199, 221, 496, 1112, 1805, 2864, 3080
BsmAI	GTCTC	5 cut(s)	662, 685, 858, 2892, 3068
BsmFI	GGGAC	5 cut(s)	17, 1749, 2979, 3097, 3176
BsmI	GAATGC	1 cut(s)	2069
Bso31I	GGTCTC	1 cut(s)	3068
BsoBI	CYCGRG	2 cut(s)	1176, 1740
Bsp120I	GGGCCC	4 cut(s)	65, 195, 223, 1252
Bsp1407I	TGTACA	1 cut(s)	1440
Bsp19I	CCATGG	2 cut(s)	802, 1335
BspCNI	CTCAG	6 cut(s)	382, 589, 994, 1264, 1859, 2887
BspFNI	CGCG	2 cut(s)	122, 250
BspMAI	CTGCAG	1 cut(s)	3042
BspPI	GGATC	9 cut(s)	103, 281, 292, 548, 1054, 1790, 2247, 2541, 2694
BspQI	GCTCTTC	1 cut(s)	2675
BspT107I	GGYRCC	4 cut(s)	56, 798, 1411, 2799
BspTNI	GGTCTC	1 cut(s)	3068
BsrDI	GCAATG	1 cut(s)	2005
BsrFI	RCCGGY	2 cut(s)	53, 95
BsrGI	TGTACA	1 cut(s)	1440
BsrI	ACTGG	5 cut(s)	678, 1138, 1204, 1675, 2055
BssAI	RCCGGY	2 cut(s)	53, 95
BssNI	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
BssT1I	CCWWGG	3 cut(s)	802, 1335, 2235
Bst2UI	CCWGG	6 cut(s)	83, 200, 491, 1257, 1857, 2684
Bst4CI	ACNGT	7 cut(s)	1749, 2033, 2632, 2665, 2982, 3025, 3258
Bst6I	CTCTTC	4 cut(s)	856, 1832, 2174, 2675
BstACI	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
BstAPI	GCANNNNNTGC	2 cut(s)	1033, 1202
BstAUI	TGTACA	1 cut(s)	1440
BstBAI	YACGTR	3 cut(s)	153, 268, 3137
BstDSI	CCRYGG	4 cut(s)	248, 277, 802, 1335
BstEII	GGTNACC	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	1803
BstF5I	GGATG	7 cut(s)	547, 572, 631, 1362, 1642, 2796, 2972
BstFNI	CGCG	2 cut(s)	122, 250
BstH2I	RGCGCY	2 cut(s)	60, 2803
BstHHI	GCGC	6 cut(s)	7, 59, 95, 314, 884, 2802
BstMAI	GTCTC	5 cut(s)	662, 685, 858, 2892, 3068
BstMCI	CGRYCG	3 cut(s)	51, 126, 254
BstNI	CCWGG	6 cut(s)	83, 200, 491, 1257, 1857, 2684
BstNSI	RCATGY	4 cut(s)	1024, 2341, 2446, 2989
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstPI	GGTNACC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	3038
BstSLI	GKGCMC	8 cut(s)	69, 199, 227, 368, 1256, 1321, 2758, 3086
BstUI	CGCG	2 cut(s)	122, 250
BstV2I	GAAGAC	1 cut(s)	3040
BstX2I	RGATCY	5 cut(s)	108, 297, 553, 2239, 2533
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	5 cut(s)	108, 297, 553, 2239, 2533
BstZI	CGGCCG	2 cut(s)	123, 251
BtgI	CCRYGG	4 cut(s)	248, 277, 802, 1335
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	7 cut(s)	547, 572, 631, 1362, 1642, 2796, 2972
BtsI	GCAGTG	2 cut(s)	825, 1043
BtsIMutI	CAGTG	8 cut(s)	368, 377, 671, 825, 1043, 2029, 2880, 2987
CaiI	CAGNNNCTG	2 cut(s)	1496, 3018
CciNI	GCGGCCGC	1 cut(s)	251
CfoI	GCGC	6 cut(s)	7, 59, 95, 314, 884, 2802
Cfr10I	RCCGGY	2 cut(s)	53, 95
Cfr42I	CCGCGG	1 cut(s)	251
CseI	GACGC	2 cut(s)	67, 271
Csp6I	GTAC	6 cut(s)	1371, 1441, 1668, 2495, 3021, 3215
CspCI	CAANNNNNGTGG	2 cut(s)	1203, 1238
CviQI	GTAC	6 cut(s)	1371, 1441, 1668, 2495, 3021, 3215
DinI	GGCGCC	2 cut(s)	58, 2801
DrdI	GACNNNNNNGTC	2 cut(s)	389, 1646
DriI	GACNNNNNGTC	1 cut(s)	2647
DseDI	GACNNNNNNGTC	2 cut(s)	389, 1646
EaeI	YGGCCR	6 cut(s)	123, 251, 270, 492, 2044, 2422
EagI	CGGCCG	2 cut(s)	123, 251
Eam1104I	CTCTTC	4 cut(s)	856, 1832, 2174, 2675
Eam1105I	GACNNNNNGTC	1 cut(s)	2647
EarI	CTCTTC	4 cut(s)	856, 1832, 2174, 2675
EciI	GGCGGA	1 cut(s)	165
EclXI	CGGCCG	2 cut(s)	123, 251
Eco130I	CCWWGG	3 cut(s)	802, 1335, 2235
Eco24I	GRGCYC	5 cut(s)	69, 199, 227, 603, 1256
Eco31I	GGTCTC	1 cut(s)	3068
Eco32I	GATATC	2 cut(s)	2266, 2380
Eco47I	GGWCC	6 cut(s)	31, 539, 1736, 2053, 2838, 2993
Eco52I	CGGCCG	2 cut(s)	123, 251
Eco57I	CTGAAG	4 cut(s)	1128, 1191, 1646, 1707
Eco72I	CACGTG	2 cut(s)	153, 268
Eco88I	CYCGRG	2 cut(s)	1176, 1740
Eco91I	GGTNACC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	1803
EcoO109I	RGGNCCY	5 cut(s)	223, 1252, 1253, 1736, 2838
EcoO65I	GGTNACC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	6 cut(s)	81, 198, 489, 1255, 1855, 2682
EcoRV	GATATC	2 cut(s)	2266, 2380
EcoT14I	CCWWGG	3 cut(s)	802, 1335, 2235
EcoT22I	ATGCAT	2 cut(s)	2448, 2991
EcoT38I	GRGCYC	5 cut(s)	69, 199, 227, 603, 1256
EgeI	GGCGCC	2 cut(s)	58, 2801
EheI	GGCGCC	2 cut(s)	58, 2801
ErhI	CCWWGG	3 cut(s)	802, 1335, 2235
FalI	AAGNNNNNCTT	8 cut(s)	1131, 1163, 2553, 2585, 2815, 2847, 3201, 3233
FaqI	GGGAC	5 cut(s)	17, 1749, 2979, 3097, 3176
FauI	CCCGC	6 cut(s)	42, 56, 234, 243, 249, 255
FauNDI	CATATG	1 cut(s)	1578
FbaI	TGATCA	1 cut(s)	2272
FokI	GGATG	7 cut(s)	534, 559, 638, 1369, 1649, 2803, 2959
FriOI	GRGCYC	5 cut(s)	69, 199, 227, 603, 1256
FspBI	CTAG	6 cut(s)	1289, 1418, 1527, 1554, 1616, 2778
GlaI	GCGC	6 cut(s)	6, 58, 94, 313, 883, 2801
GsuI	CTGGAG	3 cut(s)	683, 1692, 2673
HaeII	RGCGCY	2 cut(s)	60, 2803
HapII	CCGG	8 cut(s)	54, 96, 126, 179, 193, 495, 2858, 3115
HgaI	GACGC	2 cut(s)	67, 271
HhaI	GCGC	6 cut(s)	7, 59, 95, 314, 884, 2802
Hin1I	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
Hin6I	GCGC	6 cut(s)	5, 57, 93, 312, 882, 2800
HinP1I	GCGC	6 cut(s)	5, 57, 93, 312, 882, 2800
HincII	GTYRAC	3 cut(s)	382, 445, 2641
HindII	GTYRAC	3 cut(s)	382, 445, 2641
HindIII	AAGCTT	1 cut(s)	929
HpaII	CCGG	8 cut(s)	54, 96, 126, 179, 193, 495, 2858, 3115
HphI	GGTGA	3 cut(s)	106, 124, 1148
Hpy166II	GTNNAC	6 cut(s)	382, 445, 1016, 1319, 2641, 2732
Hpy8I	GTNNAC	6 cut(s)	382, 445, 1016, 1319, 2641, 2732
Hpy99I	CGWCG	5 cut(s)	31, 74, 287, 395, 2456
HpyAV	CCTTC	8 cut(s)	441, 476, 716, 1670, 2555, 2720, 2775, 2929
HpyCH4III	ACNGT	7 cut(s)	1749, 2033, 2632, 2665, 2982, 3025, 3258
HpyCH4IV	ACGT	6 cut(s)	152, 267, 1401, 2451, 2458, 3136
HpySE526I	ACGT	6 cut(s)	152, 267, 1401, 2451, 2458, 3136
Hsp92I	GRCGYC	5 cut(s)	57, 78, 282, 2451, 2800
HspAI	GCGC	6 cut(s)	5, 57, 93, 312, 882, 2800
KasI	GGCGCC	2 cut(s)	56, 2799
KroI	GCCGGC	2 cut(s)	53, 95
KroNI	GCCGGC	2 cut(s)	55, 97
Ksp22I	TGATCA	1 cut(s)	2272
KspI	CCGCGG	1 cut(s)	251
LguI	GCTCTTC	1 cut(s)	2675
LmnI	GCTCC	9 cut(s)	181, 309, 466, 746, 1388, 1825, 2031, 2200, 2654
LweI	GCATC	6 cut(s)	159, 844, 960, 1004, 1214, 2703
MaeI	CTAG	6 cut(s)	1289, 1418, 1527, 1554, 1616, 2778
MaeII	ACGT	6 cut(s)	152, 267, 1401, 2451, 2458, 3136
MaeIII	GTNAC	6 cut(s)	130, 1082, 1226, 1696, 1801, 1922
MfeI	CAATTG	5 cut(s)	41, 158, 771, 1908, 3087
MflI	RGATCY	5 cut(s)	108, 297, 553, 2239, 2533
MlsI	TGGCCA	1 cut(s)	2046
MluNI	TGGCCA	1 cut(s)	2046
Mly113I	GGCGCC	2 cut(s)	57, 2800
MlyI	GAGTC	5 cut(s)	342, 1485, 2567, 2714, 2879
MmeI	TCCRAC	6 cut(s)	52, 718, 2434, 2845, 2910, 2930
Mox20I	TGGCCA	1 cut(s)	2046
Mph1103I	ATGCAT	2 cut(s)	2448, 2991
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	53, 95
MroXI	GAANNNNTTC	2 cut(s)	1143, 2142
MscI	TGGCCA	1 cut(s)	2046
MseI	TTAA	2 cut(s)	782, 2351
MslI	CAYNNNNRTG	2 cut(s)	461, 1340
Msp20I	TGGCCA	1 cut(s)	2046
MspA1I	CMGCKG	4 cut(s)	63, 250, 2946, 3203
MspI	CCGG	8 cut(s)	54, 96, 126, 179, 193, 495, 2858, 3115
MunI	CAATTG	5 cut(s)	41, 158, 771, 1908, 3087
Mva1269I	GAATGC	1 cut(s)	2069
MvaI	CCWGG	6 cut(s)	83, 200, 491, 1257, 1857, 2684
MvnI	CGCG	2 cut(s)	122, 250
NaeI	GCCGGC	2 cut(s)	55, 97
NarI	GGCGCC	2 cut(s)	57, 2800
NciI	CCSGG	4 cut(s)	127, 194, 496, 3115
NcoI	CCATGG	2 cut(s)	802, 1335
NdeI	CATATG	1 cut(s)	1578
NgoMIV	GCCGGC	2 cut(s)	53, 95
NmeAIII	GCCGAG	1 cut(s)	1172
NmuCI	GTSAC	5 cut(s)	130, 1082, 1696, 1801, 1922
NotI	GCGGCCGC	1 cut(s)	251
NsiI	ATGCAT	2 cut(s)	2448, 2991
NspI	RCATGY	4 cut(s)	1024, 2341, 2446, 2989
PaeI	GCATGC	3 cut(s)	1024, 2341, 2989
PaeR7I	CTCGAG	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	2675
PcsI	WCGNNNNNNNCGW	3 cut(s)	1074, 1923, 3142
PctI	GAATGC	1 cut(s)	2069
PdiI	GCCGGC	2 cut(s)	55, 97
PdmI	GAANNNNTTC	2 cut(s)	1143, 2142
PleI	GAGTC	5 cut(s)	342, 1484, 2567, 2713, 2878
PluTI	GGCGCC	2 cut(s)	60, 2803
PmaCI	CACGTG	2 cut(s)	153, 268
PmlI	CACGTG	2 cut(s)	153, 268
PpsI	GAGTC	5 cut(s)	342, 1484, 2567, 2713, 2878
Ppu21I	YACGTR	3 cut(s)	153, 268, 3137
PpuMI	RGGWCCY	2 cut(s)	1736, 2838
PshAI	GACNNNNGTC	1 cut(s)	1080
Psp5II	RGGWCCY	2 cut(s)	1736, 2838
Psp6I	CCWGG	6 cut(s)	81, 198, 489, 1255, 1855, 2682
PspCI	CACGTG	2 cut(s)	153, 268
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	6 cut(s)	81, 198, 489, 1255, 1855, 2682
PspOMI	GGGCCC	4 cut(s)	65, 195, 223, 1252
PspPPI	RGGWCCY	2 cut(s)	1736, 2838
PstI	CTGCAG	1 cut(s)	3042
PstNI	CAGNNNCTG	2 cut(s)	1496, 3018
PsuI	RGATCY	5 cut(s)	108, 297, 553, 2239, 2533
PvuII	CAGCTG	1 cut(s)	3203
RsaI	GTAC	6 cut(s)	1372, 1442, 1669, 2496, 3022, 3216
RsaNI	GTAC	6 cut(s)	1371, 1441, 1668, 2495, 3021, 3215
RseI	CAYNNNNRTG	2 cut(s)	461, 1340
SacII	CCGCGG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	2675
SaqAI	TTAA	2 cut(s)	782, 2351
ScaI	AGTACT	1 cut(s)	1669
SchI	GAGTC	5 cut(s)	342, 1485, 2567, 2714, 2879
SfaNI	GCATC	6 cut(s)	159, 844, 960, 1004, 1214, 2703
SfcI	CTRYAG	1 cut(s)	3038
SfoI	GGCGCC	2 cut(s)	58, 2801
Sfr274I	CTCGAG	1 cut(s)	1740
Sfr303I	CCGCGG	1 cut(s)	251
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	251
SinI	GGWCC	6 cut(s)	31, 539, 1736, 2053, 2838, 2993
SlaI	CTCGAG	1 cut(s)	1740
SmiMI	CAYNNNNRTG	2 cut(s)	461, 1340
SmlI	CTYRAG	3 cut(s)	1298, 1712, 1740
SmoI	CTYRAG	3 cut(s)	1298, 1712, 1740
SphI	GCATGC	3 cut(s)	1024, 2341, 2989
SspDI	GGCGCC	2 cut(s)	56, 2799
SspMI	CTAG	6 cut(s)	1289, 1418, 1527, 1554, 1616, 2778
StyI	CCWWGG	3 cut(s)	802, 1335, 2235
TaaI	ACNGT	7 cut(s)	1749, 2033, 2632, 2665, 2982, 3025, 3258
TaiI	ACGT	6 cut(s)	155, 270, 1404, 2454, 2461, 3139
TaqI	TCGA	7 cut(s)	285, 393, 1162, 1479, 1741, 1865, 2511
TaqII	GACCGA	1 cut(s)	19
TatI	WGTACW	4 cut(s)	1440, 1667, 2494, 3020
TauI	GCSGC	9 cut(s)	40, 125, 150, 166, 253, 256, 262, 275, 3133
Tru1I	TTAA	2 cut(s)	782, 2351
Tru9I	TTAA	2 cut(s)	782, 2351
TscAI	CASTG	8 cut(s)	368, 377, 678, 825, 1043, 2036, 2880, 2987
TseFI	GTSAC	5 cut(s)	130, 1082, 1696, 1801, 1922
Tsp45I	GTSAC	5 cut(s)	130, 1082, 1696, 1801, 1922
TspGWI	ACGGA	6 cut(s)	15, 1268, 1849, 2024, 2164, 2843
TspRI	CASTG	8 cut(s)	368, 377, 678, 825, 1043, 2036, 2880, 2987
VneI	GTGCAC	1 cut(s)	1317
VpaK11BI	GGWCC	6 cut(s)	31, 539, 1736, 2053, 2838, 2993
XagI	CCTNNNNNAGG	1 cut(s)	1803
XapI	RAATTY	8 cut(s)	137, 637, 1096, 1283, 1457, 1757, 2214, 2309
XbaI	TCTAGA	1 cut(s)	2777
XceI	RCATGY	4 cut(s)	1024, 2341, 2446, 2989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3176
XhoI	CTCGAG	1 cut(s)	1740
XmnI	GAANNNNTTC	2 cut(s)	1143, 2142
XspI	CTAG	6 cut(s)	1289, 1418, 1527, 1554, 1616, 2778
ZraI	GACGTC	1 cut(s)	2452
ZrmI	AGTACT	1 cut(s)	1669
Zsp2I	ATGCAT	2 cut(s)	2448, 2991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.