Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007429.1

Orthogroup ID

OG0006671

Physical Location & Seq

Genomic Coordinates Forward (+)

10188 .. 14691

Gene Structure 4504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007429.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

atgcaatatttccaaaccctgaaaagaagcaagctcatcattaacaccagagaagcagagcagagctgcttggctctactccaactgtgcgacgtcgttccgaagctgacccaaatccaagcccacattgtcaaattgggcctccgaaacaaccccttagtgctcaccaagttcgcctccaccgcctccgaccacaaggccattgactacgcctcttccttcctgttctcgccggattccgatacccatttattcgatgcgtttctcttcaacaccgtcatcagggcttacgctcagaccggtcatgcaaagcataaagctttgtgcttttacagagttatggttaaaggtgaagtcttgcctaataaattcacctacccttttgttctcaaggcctgtgccggcgtcggggacttgaatttggggaagtcggttcatgggtcggtggtgaaattcgggtttggtgatgatgtccatgttcggaacaccatggttcatatgtactgttgctgcggtggagggattgaaagtgcacggaaggtgttcgatgaaatgcctaactgggactctgtttcgtggagcgcgatgattggaggatatgtgagggtggggtggtctagtgatgcggtggagttgtttagggagatgcagatggcgggagtgaggccggacgagattactatggtttcggttttgtctgcgtgtaccgatttgggtgcgcttgagcttggcaagtgggtggagtcctatattgagaaagaggggattcagaaaagtgtggagctttgtaatgcgctcattgacatgtttgcgaaatgtggcaatgttgataaggctttgaagttgtttaggaacatgagcgggagaacaattgtttcttggacttctgtgattgatggtttggcaatgcatggccgcggagaagaggccgtttctttgtttgaggaaatgattggagtcggggtggaaccggatgatgttgcgtttataggactgctttcggcttgtagtcattccgggttggtcgataagggaaagaggtacttcagttcaatgatggaaaaatttggacgtgtacctaagatcgaacactatgggtgcatggtggatatgttatgccgagctggacatgtcaaggaggcattggagtttattcggaaaatgcctattcagccaaatccaatagttttgcgaaccctgatcagtgcttgccgtgcgcatggtgagctcaagcttggagagagcatcaccaaggagttaatcagggctgaacctatgcatgagtcgaactatgtcctgctttccaacatctatgcaaaaatgaaccattgggagaagaaaaccaagactagagaggcgatggacaagaaagggatgaaaaagatccctgggagcactatgattgagcaagataatgaaatttacgaatttgtggcaggggataaatcgcataaacagtccaaagagatttatgaaatggttgatgaaatggggaggaagatgaagacggctggatatgttcccactacatcagaggttttgctagacattgatgaagaagataaagaagatgctttaaataggcatagtgaaaagttggccattgctttcgccctcctgaacacgccaccaggaactcctattcgcatagtaaagaatctgcgggtttgtgatgattgccactctgctactaagtacatctctaagatttataatcgagaaatagtggtgagggaccgaaacaggtactcggacagtgaattgcaaaaagaaaatgattgcatctttggaaaaccaaggatggtagaggatgtactgactgacttgctgatgcttgaaaatcagctgccattcttcattcttggggacaatccagctacagttaggagtctttccatacagtttcttcatgagcagggtgctatagctttcgggatagagttagatgattctaccagagtagaagcgaaacatattgttgatctctttagagagctattgatagctcctatgtcgaaagaaccacccatgaccaagacagaaaaatctgcaacaacaccttgcattgaaaagctacacctggctggagtccaatttaaacccgtcagaagcacgaaattgtttgagatacgatttgatgtaaccacgaaatggtttggcataggattccataaagggattctgaagattccaaaattgcacacaggggatacaacggagcttgtacttagaaacttaattgcctttgaacaatgcattacttctgaagattattgcataagtgattatgttagcatcatggatgagttggtggacgatccaaaagatgtggggttgcttgttaagtataaaattgttgaaaatgatctcggtggtggcgatcaggatttggctaccttgatcaacaacctttcaactgggattgtgtataagaagtggtcatctttgtggagagctggacaagttctacagttcgaagtggcacaaatggatggcaaatttgagaagcagttatttcaataccccttggacaactatttctttcgtggcagcaattgttctcctcatactcactgccattcaaactatctgctcaattatctctcttacgtgagcgttccttcattctgtcgatcgactctgctatcccatccttttccatcactttggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

891

Amino Acids

100.5

Weight (kDa)

6.47

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31920
fragaria_vesca	FvH4_2g29361 FvH4_5g23310
malus_domestica	MD08G1148200.v1.1
prunus_persica	Prupe.1G479200_v2.0.a1 Prupe.5G026200_v2.0.a1
pyrus_communis	pycom08g12480
rosa_chinensis	RchiOBHm_Chr6g0298171 RchiOBHm_Chr7g0212261
rosa_laevigata	RLG00000002902 RLG00000011529
rosa_multiflora	Rmu_co8497291.1_g000001 Rmu_sc0001911.1_g000044 Rmu_sc0002882.1_g000068 Rmu_sc0007429.1_g000004 Rmu_sc0010099.1_g000013 Rmu_sc0022064.1_g000003
rosa_roxburghii	Rroxscaffold_3G00246970
rosa_rugosa	Rorug06G0279100 Rorug07G0132900
rosa_samantha	Rh6AG389400 Rh6DG390300 Rh7BG259900
rosa_wichuraiana	Rw0G010650 Rw6G034000 Rw7G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1713
AatII	GACGTC	1 cut(s)	96
Acc16I	TGCGCA	1 cut(s)	1218
AccB7I	CCANNNNNTGG	1 cut(s)	2151
AccBSI	CCGCTC	1 cut(s)	861
AccII	CGCG	2 cut(s)	584, 918
AciI	CCGC	8 cut(s)	183, 513, 626, 656, 861, 916, 918, 1663
AclWI	GGATC	2 cut(s)	1378, 2312
AcoI	YGGCCR	2 cut(s)	913, 1599
AcsI	RAATTY	7 cut(s)	368, 418, 452, 1064, 1419, 1427, 2498
AcuI	CTGAAG	3 cut(s)	1030, 2204, 2286
AcyI	GRCGYC	2 cut(s)	93, 405
AfaI	GTAC	8 cut(s)	503, 706, 1043, 1077, 1697, 1748, 1815, 2226
AfiI	CCNNNNNNNGG	3 cut(s)	282, 408, 2151
AflIII	ACRYGT	3 cut(s)	804, 1072, 1129
AgeI	ACCGGT	1 cut(s)	299
AjiI	CACGTC	1 cut(s)	1073
AjnI	CCWGG	3 cut(s)	1387, 1630, 2079
Alw21I	GWGCWC	4 cut(s)	165, 535, 1230, 1397
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	2 cut(s)	1378, 2312
AoxI	GGCC	7 cut(s)	139, 198, 393, 665, 913, 927, 1599
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	4 cut(s)	66, 510, 1846, 2550
ApoI	RAATTY	7 cut(s)	368, 418, 452, 1064, 1419, 1427, 2498
AsiGI	ACCGGT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	4 cut(s)	584, 721, 796, 1219
AspS9I	GGNCC	2 cut(s)	139, 1735
AsuC2I	CCSGG	1 cut(s)	1018
AsuHPI	GGTGA	8 cut(s)	157, 362, 364, 460, 476, 1235, 1240, 1741
AsuII	TTCGAA	1 cut(s)	2475
AvaII	GGWCC	1 cut(s)	1735
BaeGI	GKGCMC	1 cut(s)	535
BaeI	ACNNNNGTAYC	2 cut(s)	1033, 1066
BalI	TGGCCA	1 cut(s)	1601
BanII	GRGCYC	1 cut(s)	1230
BbsI	GAAGAC	1 cut(s)	1511
Bbv12I	GWGCWC	4 cut(s)	165, 535, 1230, 1397
BbvI	GCAGC	4 cut(s)	53, 497, 1833, 2562
BccI	CCATC	8 cut(s)	646, 890, 1051, 1354, 1795, 2486, 2658, 2668
BceAI	ACGGC	3 cut(s)	914, 1197, 1524
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	3 cut(s)	1389, 1632, 2081
BciVI	GTATCC	1 cut(s)	2203
BclI	TGATCA	2 cut(s)	1200, 2400
BcnI	CCSGG	1 cut(s)	1018
BfaI	CTAG	3 cut(s)	618, 1350, 1544
BfmI	CTRYAG	3 cut(s)	1878, 1923, 2468
BfuI	GTATCC	1 cut(s)	2203
BisI	GCNGC	5 cut(s)	67, 511, 916, 1847, 2551
BlsI	GCNGC	5 cut(s)	68, 512, 917, 1848, 2552
Bme1390I	CCNGG	4 cut(s)	1018, 1389, 1632, 2081
Bme18I	GGWCC	1 cut(s)	1735
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	2 cut(s)	139, 1735
BmiI	GGNNCC	2 cut(s)	969, 1736
BmrFI	CCNGG	4 cut(s)	1018, 1389, 1632, 2081
BmrI	ACTGGG	2 cut(s)	571, 2427
BmsI	GCATC	8 cut(s)	247, 613, 636, 1254, 1561, 1791, 1821, 2304
BmuI	ACTGGG	2 cut(s)	571, 2427
BpiI	GAAGAC	1 cut(s)	1511
BpmI	CTGGAG	1 cut(s)	2106
Bpu14I	TTCGAA	1 cut(s)	2475
BpuEI	CTTGAG	3 cut(s)	374, 743, 1214
BpuMI	CCSGG	1 cut(s)	1018
BsaAI	YACGTR	1 cut(s)	2611
BsaHI	GRCGYC	2 cut(s)	93, 405
BsaJI	CCNNGG	7 cut(s)	489, 916, 1251, 1387, 1388, 1796, 2526
BsaWI	WCCGGW	2 cut(s)	299, 970
BsaXI	ACNNNNNCTCC	4 cut(s)	585, 615, 948, 978
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 408, 2151
Bse118I	RCCGGY	2 cut(s)	299, 401
Bse1I	ACTGG	2 cut(s)	566, 2422
Bse3DI	GCAATG	3 cut(s)	829, 912, 1602
BseBI	CCWGG	3 cut(s)	1389, 1632, 2081
BseDI	CCNNGG	7 cut(s)	489, 916, 1251, 1387, 1388, 1796, 2526
BseGI	GGATG	7 cut(s)	979, 1380, 1806, 1816, 2308, 2497, 2650
BseLI	CCNNNNNNNGG	3 cut(s)	282, 408, 2151
BseMI	GCAATG	3 cut(s)	829, 912, 1602
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	566, 2422
BseRI	GAGGAG	1 cut(s)	2553
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	4 cut(s)	53, 497, 1833, 2562
Bsh1236I	CGCG	2 cut(s)	584, 918
Bsh1285I	CGRYCG	1 cut(s)	2636
BshFI	GGCC	7 cut(s)	141, 200, 395, 667, 915, 929, 1601
BshTI	ACCGGT	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	2636
BsiHKAI	GWGCWC	4 cut(s)	165, 535, 1230, 1397
BsiSI	CCGG	6 cut(s)	233, 300, 402, 668, 971, 1017
BslFI	GGGAC	4 cut(s)	425, 578, 1748, 1880
BslI	CCNNNNNNNGG	3 cut(s)	282, 408, 2151
BsmFI	GGGAC	4 cut(s)	425, 578, 1748, 1880
BsnI	GGCC	7 cut(s)	141, 200, 395, 667, 915, 929, 1601
Bsp119I	TTCGAA	1 cut(s)	2475
Bsp1286I	GDGCHC	4 cut(s)	165, 535, 1230, 1397
Bsp143I	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	8 cut(s)	183, 513, 626, 656, 861, 916, 918, 1663
BspANI	GGCC	7 cut(s)	141, 200, 395, 667, 915, 929, 1601
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	584, 918
BspHI	TCATGA	1 cut(s)	1909
BspLI	GGNNCC	2 cut(s)	969, 1736
BspPI	GGATC	2 cut(s)	1378, 2312
BspT104I	TTCGAA	1 cut(s)	2475
BsrBI	CCGCTC	1 cut(s)	861
BsrDI	GCAATG	3 cut(s)	829, 912, 1602
BsrFI	RCCGGY	2 cut(s)	299, 401
BsrI	ACTGG	2 cut(s)	566, 2422
BssAI	RCCGGY	2 cut(s)	299, 401
BssECI	CCNNGG	7 cut(s)	489, 916, 1251, 1387, 1388, 1796, 2526
BssMI	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
BssNI	GRCGYC	2 cut(s)	93, 405
BssT1I	CCWWGG	4 cut(s)	489, 1251, 1796, 2526
Bst2UI	CCWGG	3 cut(s)	1389, 1632, 2081
Bst4CI	ACNGT	8 cut(s)	87, 277, 506, 1458, 1757, 1882, 1902, 2472
Bst6I	CTCTTC	3 cut(s)	220, 272, 918
BstACI	GRCGYC	2 cut(s)	93, 405
BstBAI	YACGTR	1 cut(s)	2611
BstBI	TTCGAA	1 cut(s)	2475
BstC8I	GCNNGC	3 cut(s)	32, 403, 1210
BstDEI	CTNAG	6 cut(s)	157, 294, 1080, 1692, 1704, 2228
BstDSI	CCRYGG	2 cut(s)	489, 916
BstF5I	GGATG	7 cut(s)	979, 1380, 1806, 1816, 2308, 2497, 2650
BstFNI	CGCG	2 cut(s)	584, 918
BstHHI	GCGC	4 cut(s)	584, 721, 796, 1219
BstKTI	GATC	9 cut(s)	1086, 1203, 1386, 1984, 2320, 2368, 2383, 2403, 2636
BstMBI	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
BstMCI	CGRYCG	1 cut(s)	2636
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 1171, 1214, 1225
BstNI	CCWGG	3 cut(s)	1389, 1632, 2081
BstNSI	RCATGY	2 cut(s)	808, 1133
BstSCI	CCNGG	4 cut(s)	1016, 1387, 1630, 2079
BstSFI	CTRYAG	3 cut(s)	1878, 1923, 2468
BstSLI	GKGCMC	1 cut(s)	535
BstUI	CGCG	2 cut(s)	584, 918
BstV1I	GCAGC	4 cut(s)	53, 497, 1833, 2562
BstV2I	GAAGAC	1 cut(s)	1511
BstX2I	RGATCY	1 cut(s)	1383
BstXI	CCANNNNNNTGG	1 cut(s)	2667
BstYI	RGATCY	1 cut(s)	1383
BsuI	GTATCC	1 cut(s)	2203
BsuRI	GGCC	7 cut(s)	141, 200, 395, 667, 915, 929, 1601
BtgI	CCRYGG	2 cut(s)	489, 916
BtgZI	GCGATG	2 cut(s)	599, 1373
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	7 cut(s)	979, 1380, 1806, 1816, 2308, 2497, 2650
BtsI	GCAGTG	1 cut(s)	2572
BtsIMutI	CAGTG	3 cut(s)	1210, 1762, 2572
Cac8I	GCNNGC	3 cut(s)	32, 403, 1210
CciI	TCATGA	1 cut(s)	1909
CfoI	GCGC	4 cut(s)	584, 721, 796, 1219
Cfr10I	RCCGGY	2 cut(s)	299, 401
Cfr13I	GGNCC	2 cut(s)	139, 1735
Cfr42I	CCGCGG	1 cut(s)	919
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	8 cut(s)	502, 705, 1042, 1076, 1696, 1747, 1814, 2225
CspAI	ACCGGT	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	2310, 2345
CviQI	GTAC	8 cut(s)	502, 705, 1042, 1076, 1696, 1747, 1814, 2225
DdeI	CTNAG	6 cut(s)	157, 294, 1080, 1692, 1704, 2228
DpnI	GATC	9 cut(s)	1085, 1202, 1385, 1983, 2319, 2367, 2382, 2402, 2635
DpnII	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
DraI	TTTAAA	2 cut(s)	1578, 2098
EaeI	YGGCCR	2 cut(s)	913, 1599
Eam1104I	CTCTTC	3 cut(s)	220, 272, 918
EarI	CTCTTC	3 cut(s)	220, 272, 918
Ecl136II	GAGCTC	1 cut(s)	1228
Eco130I	CCWWGG	4 cut(s)	489, 1251, 1796, 2526
Eco147I	AGGCCT	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	1230
Eco47I	GGWCC	1 cut(s)	1735
Eco53kI	GAGCTC	1 cut(s)	1228
Eco57I	CTGAAG	3 cut(s)	1030, 2204, 2286
EcoICRI	GAGCTC	1 cut(s)	1228
EcoRII	CCWGG	3 cut(s)	1387, 1630, 2079
EcoT14I	CCWWGG	4 cut(s)	489, 1251, 1796, 2526
EcoT22I	ATGCAT	3 cut(s)	912, 1281, 2258
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	4 cut(s)	489, 1251, 1796, 2526
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FaqI	GGGAC	4 cut(s)	425, 578, 1748, 1880
FauI	CCCGC	3 cut(s)	649, 854, 1656
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	2 cut(s)	1200, 2400
Fnu4HI	GCNGC	5 cut(s)	67, 511, 916, 1847, 2551
FokI	GGATG	7 cut(s)	986, 1387, 1813, 1823, 2315, 2504, 2637
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	5 cut(s)	67, 511, 916, 1847, 2551
FspAI	RTGCGCAY	1 cut(s)	1218
FspBI	CTAG	3 cut(s)	618, 1350, 1544
FspI	TGCGCA	1 cut(s)	1218
GlaI	GCGC	4 cut(s)	583, 720, 795, 1218
GluI	GCNGC	5 cut(s)	67, 511, 916, 1847, 2551
GsuI	CTGGAG	1 cut(s)	2106
HaeIII	GGCC	7 cut(s)	141, 200, 395, 667, 915, 929, 1601
HapII	CCGG	6 cut(s)	233, 300, 402, 668, 971, 1017
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	4 cut(s)	584, 721, 796, 1219
Hin1I	GRCGYC	2 cut(s)	93, 405
Hin6I	GCGC	4 cut(s)	582, 719, 794, 1217
HinP1I	GCGC	4 cut(s)	582, 719, 794, 1217
HindIII	AAGCTT	2 cut(s)	318, 1232
HpaII	CCGG	6 cut(s)	233, 300, 402, 668, 971, 1017
HphI	GGTGA	8 cut(s)	157, 362, 364, 460, 476, 1235, 1240, 1741
Hpy166II	GTNNAC	4 cut(s)	533, 705, 1076, 2314
Hpy188III	TCNNGA	5 cut(s)	1618, 1718, 1910, 1933, 2384
Hpy8I	GTNNAC	4 cut(s)	533, 705, 1076, 2314
Hpy99I	CGWCG	3 cut(s)	95, 98, 410
HpyAV	CCTTC	3 cut(s)	229, 532, 2631
HpyCH4III	ACNGT	8 cut(s)	87, 277, 506, 1458, 1757, 1882, 1902, 2472
HpyCH4IV	ACGT	3 cut(s)	93, 1072, 2610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 1171, 1214, 1225
HpyF3I	CTNAG	6 cut(s)	157, 294, 1080, 1692, 1704, 2228
HpySE526I	ACGT	3 cut(s)	93, 1072, 2610
Hsp92I	GRCGYC	2 cut(s)	93, 405
HspAI	GCGC	4 cut(s)	582, 719, 794, 1217
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Ksp22I	TGATCA	2 cut(s)	1200, 2400
KspI	CCGCGG	1 cut(s)	919
Kzo9I	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
LmnI	GCTCC	5 cut(s)	579, 781, 1392, 2011, 2218
Lsp1109I	GCAGC	4 cut(s)	53, 497, 1833, 2562
LweI	GCATC	8 cut(s)	247, 613, 636, 1254, 1561, 1791, 1821, 2304
MaeI	CTAG	3 cut(s)	618, 1350, 1544
MaeII	ACGT	3 cut(s)	93, 1072, 2610
MaeIII	GTNAC	1 cut(s)	2140
MalI	GATC	9 cut(s)	1085, 1202, 1385, 1983, 2319, 2367, 2382, 2402, 2635
MbiI	CCGCTC	1 cut(s)	861
MboI	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
MfeI	CAATTG	2 cut(s)	870, 2554
MflI	RGATCY	1 cut(s)	1383
MhlI	GDGCHC	4 cut(s)	165, 535, 1230, 1397
MlsI	TGGCCA	1 cut(s)	1601
MluNI	TGGCCA	1 cut(s)	1601
MlyI	GAGTC	7 cut(s)	560, 752, 966, 1292, 1897, 2097, 2632
MmeI	TCCRAC	3 cut(s)	106, 213, 1329
Mox20I	TGGCCA	1 cut(s)	1601
Mph1103I	ATGCAT	3 cut(s)	912, 1281, 2258
MroNI	GCCGGC	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	1601
MseI	TTAA	7 cut(s)	42, 345, 1259, 1577, 2097, 2237, 2343
MslI	CAYNNNNRTG	2 cut(s)	803, 2446
Msp20I	TGGCCA	1 cut(s)	1601
MspA1I	CMGCKG	2 cut(s)	918, 1846
MspI	CCGG	6 cut(s)	233, 300, 402, 668, 971, 1017
MspR9I	CCNGG	4 cut(s)	1018, 1389, 1632, 2081
MunI	CAATTG	2 cut(s)	870, 2554
MvaI	CCWGG	3 cut(s)	1389, 1632, 2081
MvnI	CGCG	2 cut(s)	584, 918
MwoI	GCNNNNNNNGC	4 cut(s)	182, 1171, 1214, 1225
NaeI	GCCGGC	1 cut(s)	403
NciI	CCSGG	1 cut(s)	1018
NcoI	CCATGG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
NgoMIV	GCCGGC	1 cut(s)	401
NlaIV	GGNNCC	2 cut(s)	969, 1736
NmeAIII	GCCGAG	1 cut(s)	1145
NsbI	TGCGCA	1 cut(s)	1218
NsiI	ATGCAT	3 cut(s)	912, 1281, 2258
NspI	RCATGY	2 cut(s)	808, 1133
NspV	TTCGAA	1 cut(s)	2475
PagI	TCATGA	1 cut(s)	1909
PasI	CCCWGGG	1 cut(s)	1388
PceI	AGGCCT	1 cut(s)	395
PciI	ACATGT	2 cut(s)	804, 1129
PcsI	WCGNNNNNNNCGW	2 cut(s)	581, 2376
PdiI	GCCGGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	7 cut(s)	236, 766, 1657, 1949, 2166, 2179, 2188
PflMI	CCANNNNNTGG	1 cut(s)	2151
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	68, 512, 917, 1848, 2552
Ple19I	CGATCG	1 cut(s)	2636
PleI	GAGTC	7 cut(s)	560, 751, 965, 1291, 1896, 2096, 2632
PpsI	GAGTC	7 cut(s)	560, 751, 965, 1291, 1896, 2096, 2632
Ppu21I	YACGTR	1 cut(s)	2611
PscI	ACATGT	2 cut(s)	804, 1129
PsiI	TTATAA	1 cut(s)	1713
Psp124BI	GAGCTC	1 cut(s)	1230
Psp6I	CCWGG	3 cut(s)	1387, 1630, 2079
PspGI	CCWGG	3 cut(s)	1387, 1630, 2079
PspN4I	GGNNCC	2 cut(s)	969, 1736
PspPI	GGNCC	2 cut(s)	139, 1735
PsuI	RGATCY	1 cut(s)	1383
PvuI	CGATCG	1 cut(s)	2636
PvuII	CAGCTG	1 cut(s)	1846
RsaI	GTAC	8 cut(s)	503, 706, 1043, 1077, 1697, 1748, 1815, 2226
RsaNI	GTAC	8 cut(s)	502, 705, 1042, 1076, 1696, 1747, 1814, 2225
RseI	CAYNNNNRTG	2 cut(s)	803, 2446
SacI	GAGCTC	1 cut(s)	1230
SacII	CCGCGG	1 cut(s)	919
SaqAI	TTAA	7 cut(s)	42, 345, 1259, 1577, 2097, 2237, 2343
SatI	GCNGC	5 cut(s)	67, 511, 916, 1847, 2551
Sau3AI	GATC	9 cut(s)	1083, 1200, 1383, 1981, 2317, 2365, 2380, 2400, 2633
Sau96I	GGNCC	2 cut(s)	139, 1735
SchI	GAGTC	7 cut(s)	560, 752, 966, 1292, 1897, 2097, 2632
ScrFI	CCNGG	4 cut(s)	1018, 1389, 1632, 2081
SduI	GDGCHC	4 cut(s)	165, 535, 1230, 1397
SfaNI	GCATC	8 cut(s)	247, 613, 636, 1254, 1561, 1791, 1821, 2304
SfcI	CTRYAG	3 cut(s)	1878, 1923, 2468
Sfr303I	CCGCGG	1 cut(s)	919
SfuI	TTCGAA	1 cut(s)	2475
SgrBI	CCGCGG	1 cut(s)	919
SinI	GGWCC	1 cut(s)	1735
SmiMI	CAYNNNNRTG	2 cut(s)	803, 2446
SmlI	CTYRAG	3 cut(s)	389, 722, 1229
SmoI	CTYRAG	3 cut(s)	389, 722, 1229
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	8 cut(s)	183, 513, 626, 656, 861, 916, 918, 1663
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	3 cut(s)	618, 1350, 1544
SstI	GAGCTC	1 cut(s)	1230
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	4 cut(s)	1016, 1387, 1630, 2079
StyI	CCWWGG	4 cut(s)	489, 1251, 1796, 2526
TaaI	ACNGT	8 cut(s)	87, 277, 506, 1458, 1757, 1882, 1902, 2472
TaiI	ACGT	3 cut(s)	96, 1075, 2613
TaqII	GACCGA	1 cut(s)	1752
TatI	WGTACW	4 cut(s)	501, 1695, 1813, 2224
TauI	GCSGC	1 cut(s)	918
TfiI	GAWTC	7 cut(s)	236, 766, 1657, 1949, 2166, 2179, 2188
Tru1I	TTAA	7 cut(s)	42, 345, 1259, 1577, 2097, 2237, 2343
Tru9I	TTAA	7 cut(s)	42, 345, 1259, 1577, 2097, 2237, 2343
TscAI	CASTG	3 cut(s)	1210, 1762, 2579
TseI	GCWGC	4 cut(s)	66, 510, 1846, 2550
TspGWI	ACGGA	2 cut(s)	550, 2231
TspRI	CASTG	3 cut(s)	1210, 1762, 2579
Van91I	CCANNNNNTGG	1 cut(s)	2151
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	1735
XapI	RAATTY	7 cut(s)	368, 418, 452, 1064, 1419, 1427, 2498
XceI	RCATGY	2 cut(s)	808, 1133
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	3 cut(s)	618, 1350, 1544
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	3 cut(s)	912, 1281, 2258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.