Rorug06G0279100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006671
Physical Location & Seq
Reverse (-)
42639447 .. 42645006
5560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0279100.1

Sequence Viewer

Length: 2721 bp
ATGGACCTTCTGTGTTTTTGGGTTGGCTTCTTTCTGTTCCTTGGATTTTGGGTAGTTGCTTTCTCTGATCAAGATGGTTTCTTGAGCTTAACTTGTGGTGGAACTATGAATTACACCGATTCATCCAATATCTCATGGATTCGAGACAATGAATTCATAGCCACAGGCAACACCACTACCATCAGTTACATTGAGGGGACCTCCTCATTTACTGTCCCGGTTCGGTTTTTCCCAATTCTCCAATCTCACAACTGTTATAGGCTACCAGTGAGTAATGTGTCATTTTTGGTTCTTGTTAGAGCTCAATTTGTGTACAAAGACTATGATGGACTTGGGAAACCCCCATCATTCTCTGTATCTCTTGGCACAGCCATTGTTAGTACTATAGATCTCAGAAAAACCGATCCTTGGATAGAAGAGTTTTTATGGCCAGTTGATAAGGACACAGTCTCTTTTTGTTTGCATAATATACCAGATAGAGGGGCTCCTGTAATTACTTCAATTGAAGTTAGGCCACTTCCCCAAGGAGCTTACACAAGTGGCATGGAAGATTTCCCACATAAGTCACTGAGGAAAAGTTATCGAATAGATTGTGGCAACACAAATGGATCCTTGAGGTATCCGTTGGATCCATATGATCGTATATGGGATGCTGATCAAAGCTTTGCACCATTTCATGTGTCAACTGGTTTTAAGACTCAACTTATTACCTTCAATTTTTTGGGGTTAAAGGAGAGTCTCCCAGCTGATATCCTTCAAACTGCAAGAGTTTTGGCACGGAGGGATGCCTTGACATATAACTTATCTCTTGACACCTTGGCAGACTACTACATTGTCCTCTACTTTGCTGGGATTCTACCTGTGTTTCCTTCATTCGACATCTTGATTAATGGTGATGTTGCACAATCGAATTATACTGTAAGAAGCTCAGAAGTTAGTGCACTATACTTCACGCAGAGAGGAATAAAGAGCTTGAACATCACACTTAAGAGCATCAGCTTCTATCCTCAAATCAATGCAATTGAGGTGTATGAAATTCTTGATATTCCAGAAGAAGCCTCCTCCACTACAGGTTCAGCCCTTCAGGTTATCCAACAGTCAATTGGTTTAGATTTGGGATGGCAAGGTGACCCTTGCTCTCCGACAAAATGGGATCAAGTTGAATGTGAAGGAAACATAGTTACCTCATTGAAGCTTTCAGACATCAACTTGAGGTCAATTAGTCCAGCCATTGGTGACTTGCTGGATCTTAAAACACTGGATTTGCATAACACATCGCTTACCGGTGAACTACAGAATCTGGGTAGCTTGACACGTCTTGAGAAACTGAATCTGAGCTTCAATCAGTTAACTTCCTTTGGAACTGAGTTGGACAGCTTGGTTAGCCTTCAAATTCTGGACTTGCAAAACAATACTTTACAGGGAATGGTTCCGGATAGTTTGGGAGAGTTGGAGGATCTTCACTTGTTGAATGTAGAAAATAACAAACTGCAAGGTGTTCTTCCCCAGTCTTTGAACAGAGAAAGCTTGGAAATTAGAGCATCCGGAAATCTGTGCCTATCTTTCTCAACAATGACATGCAATGATTTCTCAGGCTCAGACAACTCTTCTATTGAGGCACCACAAGTTACTATCTTTCCCGGAAAGAAACACACGAAGCACAGTAATATAGCAGTTATACTCGGTGCTATTGGAGGAGCCTTACTCGCCCTTCTGATACTTGCCTCCATTTCTGTAATGTTGTATGTGAAGAAAAGAAGAACTGATGTCACATCAATGGAGAGGGCAATGTTAGATATGCGTAACTGGAATTCAGCAAAGGTTTTTAGCCACAAAGAAATTAAAGCAGCCACCAACAATTTCAAGCAACTTTTAGGCCGTGGAAGTTTTGGTTCAGTTTACCTTGGAAAACTTCCCAATGGAAGAATGGTGGCTGTGAAAGTGCGATTTGATAAAAGCCAACTTGGGGCTGATTCCTTTGTCAATGAGGTGCATCTCTTGTCTCGAATTCGCCATCAAAATCTTGTGTGCTTGGAAGGATTCTGCCATGAATCAAAGCAGCAAATACTTGTTTACGAGTATCTTCATTGTGGTTCGTTGGCTGACCACCTTTATGGTCCAAAGAGTAAAAAAGTTTCACTGAGCTGGGTTCGCCGACTGAAAATTGCTGTTGATGCTGCAAAAGGATTGGACTATCTACACAATGGAAATGAACCACGAATCATACACCGTGATATAAAATGCAGTAACATACTTTTGGACAAGCAGATGAATGCTAAGGTTTGTGATTTTGGCCTCTCTAAGCAAGTAATGCAGGCAGATGCAACTCACGTCACCACTGTTGTCAAGGGAACTGCTGGCTATCTTGATCCTGAATATTACTCAACACAACAGCTTACTGAGAAAAGCGATGTCTATAGCTTCGGAGTAGTTCTTCTGGAGCTCATTTGTGGAAGGGAACCATTGAGTCACTCAGGAACTCCAGACTCCTTTAATTTGGTGTTATGGGCCAAGCCTTACTTACAAGCAGGTGCTTATGAAATAGTGGATGAGAGCCTAGAGGGAACGTTTGACGTTGAAAGCATGAGAAAGGCAGCCCTAGTTGCTGTAAGGTCCGTAGAAAGAGATGCATCAAAAAGACCAACCATAGCAGAGGTCTTGGCTGAGCTGAAAGAAGCCTATATCATTCAGCTTTCATATCTCCAATCTCGCGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

906

Amino Acids

100.81

Weight (kDa)

5.65

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 31 - 346 1.8e-50 Malectin-like domain
LRR_4 PF12799 417 - 455 8.9e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 438 - 473 5.4e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 439 - 497 1e-06 Leucine rich repeat
Pkinase PF00069 621 - 888 3.1e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 621 - 826 2.8e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2519
Acc36I ACCTGC 1 cut(s) 2519
AccB1I GGYRCC 1 cut(s) 1618
AccB7I CCANNNNNTGG 1 cut(s) 1232
AccII CGCG 1 cut(s) 2712
AccIII TCCGGA 2 cut(s) 1432, 1544
AclI AACGTT 1 cut(s) 2567
AclWI GGATC 9 cut(s) 398, 603, 616, 623, 636, 1161, 1254, 1464, 2363
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 5 cut(s) 152, 1035, 1392, 1810, 2007
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 2 cut(s) 314, 382
AfiI CCNNNNNNNGG 4 cut(s) 408, 479, 1232, 1966
AflII CTTAAG 1 cut(s) 986
AflIII ACRYGT 1 cut(s) 1313
AgeI ACCGGT 1 cut(s) 1283
AjiI CACGTC 2 cut(s) 1316, 2332
Alw21I GWGCWC 3 cut(s) 304, 943, 2445
Alw26I GTCTC 4 cut(s) 138, 454, 743, 2007
Alw44I GTGCAC 1 cut(s) 939
AlwI GGATC 9 cut(s) 398, 603, 616, 623, 636, 1161, 1254, 1464, 2363
AlwNI CAGNNNCTG 1 cut(s) 1300
Aor13HI TCCGGA 2 cut(s) 1432, 1544
AoxI GGCC 5 cut(s) 428, 512, 1876, 2293, 2508
ApaLI GTGCAC 1 cut(s) 939
ApeKI GCWGC 4 cut(s) 1847, 2059, 2177, 2594
ApoI RAATTY 5 cut(s) 152, 1035, 1392, 1810, 2007
AseI ATTAAT 1 cut(s) 888
AsiGI ACCGGT 1 cut(s) 1283
AspS9I GGNCC 5 cut(s) 4, 198, 2117, 2508, 2613
AsuC2I CCSGG 2 cut(s) 218, 1641
AsuHPI GGTGA 5 cut(s) 905, 1139, 1247, 1298, 2326
AvaII GGWCC 4 cut(s) 4, 198, 2117, 2613
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 1 cut(s) 430
BamHI GGATCC 2 cut(s) 608, 628
BanI GGYRCC 1 cut(s) 1618
BanII GRGCYC 3 cut(s) 304, 487, 2445
Bbv12I GWGCWC 3 cut(s) 304, 943, 2445
BbvI GCAGC 4 cut(s) 1859, 2071, 2164, 2606
BccI CCATC 6 cut(s) 68, 188, 320, 352, 1113, 2022
BceAI ACGGC 1 cut(s) 1863
BciVI GTATCC 1 cut(s) 630
BclI TGATCA 2 cut(s) 67, 655
BcnI CCSGG 2 cut(s) 218, 1641
BcoDI GTCTC 4 cut(s) 138, 454, 743, 2007
BfaI CTAG 2 cut(s) 2558, 2600
BfmI CTRYAG 4 cut(s) 384, 1068, 1292, 2416
BfrI CTTAAG 1 cut(s) 986
BfuAI ACCTGC 1 cut(s) 2519
BfuI GTATCC 1 cut(s) 630
BglII AGATCT 1 cut(s) 388
BisI GCNGC 4 cut(s) 1848, 2060, 2178, 2595
BlpI GCTNAGC 1 cut(s) 2664
BlsI GCNGC 4 cut(s) 1849, 2061, 2179, 2596
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 218, 1641
Bme18I GGWCC 4 cut(s) 4, 198, 2117, 2613
BmgBI CACGTC 2 cut(s) 1316, 2332
BmgT120I GGNCC 5 cut(s) 4, 198, 2117, 2508, 2613
BmiI GGNNCC 8 cut(s) 199, 486, 610, 630, 1431, 1620, 1699, 2460
BmrFI CCNGG 2 cut(s) 218, 1641
BmrI ACTGGG 1 cut(s) 1501
BmsI GCATC 9 cut(s) 640, 775, 1002, 1550, 2002, 2164, 2311, 2617, 2639
BmuI ACTGGG 1 cut(s) 1501
BplI GAGNNNNNCTC 4 cut(s) 185, 217, 1689, 1721
BpmI CTGGAG 2 cut(s) 2459, 2466
Bpu10I CCTNAGC 1 cut(s) 2277
Bpu1102I GCTNAGC 1 cut(s) 2664
BpuEI CTTGAG 4 cut(s) 103, 634, 1231, 1340
BpuMI CCSGG 2 cut(s) 218, 1641
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 6 cut(s) 40, 407, 523, 816, 1879, 1903
BsaWI WCCGGW 3 cut(s) 1283, 1432, 1544
Bsc4I CCNNNNNNNGG 4 cut(s) 408, 479, 1232, 1966
Bse118I RCCGGY 1 cut(s) 1283
Bse1I ACTGG 6 cut(s) 266, 431, 691, 1263, 1507, 1811
Bse3DI GCAATG 2 cut(s) 1588, 1794
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 2 cut(s) 1432, 1544
BseDI CCNNGG 6 cut(s) 40, 407, 523, 816, 1879, 1903
BseGI GGATG 6 cut(s) 122, 655, 790, 1124, 1541, 2554
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 4 cut(s) 408, 479, 1232, 1966
BseMI GCAATG 2 cut(s) 1588, 1794
BseNI ACTGG 6 cut(s) 266, 431, 691, 1263, 1507, 1811
BseRI GAGGAG 3 cut(s) 193, 1051, 1710
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 4 cut(s) 1859, 2071, 2164, 2606
BseYI CCCAGC 3 cut(s) 742, 848, 2145
Bsh1236I CGCG 1 cut(s) 2712
BshFI GGCC 5 cut(s) 430, 514, 1878, 2295, 2510
BshNI GGYRCC 1 cut(s) 1618
BshTI ACCGGT 1 cut(s) 1283
BsiHKAI GWGCWC 3 cut(s) 304, 943, 2445
BsiSI CCGG 5 cut(s) 218, 1284, 1433, 1545, 1641
BslFI GGGAC 2 cut(s) 200, 211
BslI CCNNNNNNNGG 4 cut(s) 408, 479, 1232, 1966
BsmAI GTCTC 4 cut(s) 138, 454, 743, 2007
BsmFI GGGAC 2 cut(s) 200, 211
BsmI GAATGC 1 cut(s) 2278
BsnI GGCC 5 cut(s) 430, 514, 1878, 2295, 2510
Bsp1286I GDGCHC 4 cut(s) 304, 487, 943, 2445
Bsp13I TCCGGA 2 cut(s) 1432, 1544
Bsp1407I TGTACA 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 2664
Bsp68I TCGCGA 1 cut(s) 2712
BspANI GGCC 5 cut(s) 430, 514, 1878, 2295, 2510
BspEI TCCGGA 2 cut(s) 1432, 1544
BspFNI CGCG 1 cut(s) 2712
BspLI GGNNCC 8 cut(s) 199, 486, 610, 630, 1431, 1620, 1699, 2460
BspMI ACCTGC 1 cut(s) 2519
BspPI GGATC 9 cut(s) 398, 603, 616, 623, 636, 1161, 1254, 1464, 2363
BspT107I GGYRCC 1 cut(s) 1618
BspTI CTTAAG 1 cut(s) 986
BsrDI GCAATG 2 cut(s) 1588, 1794
BsrFI RCCGGY 1 cut(s) 1283
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 6 cut(s) 266, 431, 691, 1263, 1507, 1811
BssAI RCCGGY 1 cut(s) 1283
BssECI CCNNGG 6 cut(s) 40, 407, 523, 816, 1879, 1903
BssT1I CCWWGG 5 cut(s) 40, 407, 523, 816, 1903
Bst4CI ACNGT 8 cut(s) 214, 254, 448, 919, 1098, 1664, 2231, 2341
Bst6I CTCTTC 2 cut(s) 411, 1612
BstAFI CTTAAG 1 cut(s) 986
BstAPI GCANNNNNTGC 1 cut(s) 2311
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 2316, 2359
BstDSI CCRYGG 1 cut(s) 1879
BstEII GGTNACC 1 cut(s) 1127
BstF5I GGATG 6 cut(s) 122, 655, 790, 1124, 1541, 2554
BstFNI CGCG 1 cut(s) 2712
BstMAI GTCTC 4 cut(s) 138, 454, 743, 2007
BstMWI GCNNNNNNNGC 6 cut(s) 1383, 1706, 2151, 2174, 2311, 2603
BstNSI RCATGY 1 cut(s) 1581
BstPI GGTNACC 1 cut(s) 1127
BstSCI CCNGG 2 cut(s) 216, 1639
BstSFI CTRYAG 4 cut(s) 384, 1068, 1292, 2416
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 2712
BstV1I GCAGC 4 cut(s) 1859, 2071, 2164, 2606
BstX2I RGATCY 5 cut(s) 388, 608, 628, 1246, 1456
BstXI CCANNNNNNTGG 1 cut(s) 2114
BstYI RGATCY 5 cut(s) 388, 608, 628, 1246, 1456
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 5 cut(s) 430, 514, 1878, 2295, 2510
BtgI CCRYGG 1 cut(s) 1879
BtgZI GCGATG 2 cut(s) 1260, 2424
BtrI CACGTC 2 cut(s) 1316, 2332
BtsCI GGATG 6 cut(s) 122, 655, 790, 1124, 1541, 2554
BtsIMutI CAGTG 5 cut(s) 273, 566, 1256, 2138, 2337
BtuMI TCGCGA 1 cut(s) 2712
BveI ACCTGC 1 cut(s) 2519
Cac8I GCNNGC 2 cut(s) 2316, 2359
CaiI CAGNNNCTG 1 cut(s) 1300
Cfr10I RCCGGY 1 cut(s) 1283
Cfr13I GGNCC 5 cut(s) 4, 198, 2117, 2508, 2613
Csp6I GTAC 2 cut(s) 313, 381
CspAI ACCGGT 1 cut(s) 1283
CviAII CATG 6 cut(s) 135, 544, 677, 1578, 2048, 2584
CviQI GTAC 2 cut(s) 313, 381
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 2 cut(s) 411, 1612
EarI CTCTTC 2 cut(s) 411, 1612
Ecl136II GAGCTC 2 cut(s) 302, 2443
Eco130I CCWWGG 5 cut(s) 40, 407, 523, 816, 1903
Eco24I GRGCYC 3 cut(s) 304, 487, 2445
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 4 cut(s) 4, 198, 2117, 2613
Eco53kI GAGCTC 2 cut(s) 302, 2443
Eco57I CTGAAG 1 cut(s) 1067
Eco91I GGTNACC 1 cut(s) 1127
EcoICRI GAGCTC 2 cut(s) 302, 2443
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 1127
EcoRI GAATTC 3 cut(s) 152, 1810, 2007
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 5 cut(s) 40, 407, 523, 816, 1903
EcoT22I ATGCAT 1 cut(s) 2632
EcoT38I GRGCYC 3 cut(s) 304, 487, 2445
ErhI CCWWGG 5 cut(s) 40, 407, 523, 816, 1903
FaeI CATG 6 cut(s) 138, 547, 680, 1581, 2051, 2587
FalI AAGNNNNNCTT 4 cut(s) 1485, 1517, 2504, 2536
FaqI GGGAC 2 cut(s) 200, 211
FatI CATG 6 cut(s) 134, 543, 676, 1577, 2047, 2583
FauNDI CATATG 2 cut(s) 634, 2717
FbaI TGATCA 2 cut(s) 67, 655
Fnu4HI GCNGC 4 cut(s) 1848, 2060, 2178, 2595
FokI GGATG 6 cut(s) 109, 662, 797, 1131, 1528, 2561
FriOI GRGCYC 3 cut(s) 304, 487, 2445
Fsp4HI GCNGC 4 cut(s) 1848, 2060, 2178, 2595
FspBI CTAG 2 cut(s) 2558, 2600
GluI GCNGC 4 cut(s) 1848, 2060, 2178, 2595
GsaI CCCAGC 3 cut(s) 746, 852, 2149
GsuI CTGGAG 2 cut(s) 2459, 2466
HaeIII GGCC 5 cut(s) 430, 514, 1878, 2295, 2510
HapII CCGG 5 cut(s) 218, 1284, 1433, 1545, 1641
Hin1II CATG 6 cut(s) 138, 547, 680, 1581, 2051, 2587
HincII GTYRAC 2 cut(s) 684, 1350
HindII GTYRAC 2 cut(s) 684, 1350
HindIII AAGCTT 3 cut(s) 661, 1193, 1525
HpaI GTTAAC 1 cut(s) 1350
HpaII CCGG 5 cut(s) 218, 1284, 1433, 1545, 1641
HphI GGTGA 5 cut(s) 905, 1139, 1247, 1298, 2326
Hpy166II GTNNAC 7 cut(s) 313, 684, 941, 1289, 1350, 1900, 2074
Hpy188I TCNGA 9 cut(s) 67, 395, 931, 1143, 1201, 1335, 1600, 1716, 2426
Hpy8I GTNNAC 7 cut(s) 313, 684, 941, 1289, 1350, 1900, 2074
HpyCH4III ACNGT 8 cut(s) 214, 254, 448, 919, 1098, 1664, 2231, 2341
HpyCH4IV ACGT 4 cut(s) 1315, 2331, 2567, 2574
HpyF10VI GCNNNNNNNGC 6 cut(s) 1383, 1706, 2151, 2174, 2311, 2603
HpySE526I ACGT 4 cut(s) 1315, 2331, 2567, 2574
Hsp92II CATG 6 cut(s) 138, 547, 680, 1581, 2051, 2587
Kpn2I TCCGGA 2 cut(s) 1432, 1544
Ksp22I TGATCA 2 cut(s) 67, 655
KspAI GTTAAC 1 cut(s) 1350
LmnI GCTCC 4 cut(s) 490, 527, 1697, 2440
Lsp1109I GCAGC 4 cut(s) 1859, 2071, 2164, 2606
LweI GCATC 9 cut(s) 640, 775, 1002, 1550, 2002, 2164, 2311, 2617, 2639
MaeI CTAG 2 cut(s) 2558, 2600
MaeII ACGT 4 cut(s) 1315, 2331, 2567, 2574
MfeI CAATTG 3 cut(s) 501, 1020, 1101
MflI RGATCY 5 cut(s) 388, 608, 628, 1246, 1456
MhlI GDGCHC 4 cut(s) 304, 487, 943, 2445
MlsI TGGCCA 1 cut(s) 430
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 4 cut(s) 691, 745, 2476, 2480
MmeI TCCRAC 5 cut(s) 606, 1117, 1166, 1350, 1431
Mox20I TGGCCA 1 cut(s) 430
Mph1103I ATGCAT 1 cut(s) 2632
MroI TCCGGA 2 cut(s) 1432, 1544
MscI TGGCCA 1 cut(s) 430
MseI TTAA 9 cut(s) 89, 693, 728, 888, 987, 1251, 1349, 1842, 2493
MslI CAYNNNNRTG 2 cut(s) 1775, 2112
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 746
MspCI CTTAAG 1 cut(s) 986
MspI CCGG 5 cut(s) 218, 1284, 1433, 1545, 1641
MspR9I CCNGG 2 cut(s) 218, 1641
MunI CAATTG 3 cut(s) 501, 1020, 1101
Mva1269I GAATGC 1 cut(s) 2278
MvnI CGCG 1 cut(s) 2712
MwoI GCNNNNNNNGC 6 cut(s) 1383, 1706, 2151, 2174, 2311, 2603
NciI CCSGG 2 cut(s) 218, 1641
NdeI CATATG 2 cut(s) 634, 2717
NlaIII CATG 6 cut(s) 138, 547, 680, 1581, 2051, 2587
NlaIV GGNNCC 8 cut(s) 199, 486, 610, 630, 1431, 1620, 1699, 2460
NmuCI GTSAC 6 cut(s) 564, 1127, 1235, 1768, 2332, 2468
NruI TCGCGA 1 cut(s) 2712
NsiI ATGCAT 1 cut(s) 2632
NspI RCATGY 1 cut(s) 1581
PaqCI CACCTGC 1 cut(s) 2519
PctI GAATGC 1 cut(s) 2278
PfeI GAWTC 9 cut(s) 119, 139, 853, 1297, 1330, 1973, 2040, 2051, 2220
PflFI GACNNNGTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 1232
PfoI TCCNGGA 1 cut(s) 1639
PinAI ACCGGT 1 cut(s) 1283
PkrI GCNGC 4 cut(s) 1849, 2061, 2179, 2596
PleI GAGTC 4 cut(s) 691, 744, 2475, 2480
PpsI GAGTC 4 cut(s) 691, 744, 2475, 2480
PpuMI RGGWCCY 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 888
Psp124BI GAGCTC 2 cut(s) 304, 2445
Psp1406I AACGTT 1 cut(s) 2567
Psp5II RGGWCCY 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 1127
PspFI CCCAGC 3 cut(s) 742, 848, 2145
PspN4I GGNNCC 8 cut(s) 199, 486, 610, 630, 1431, 1620, 1699, 2460
PspPI GGNCC 5 cut(s) 4, 198, 2117, 2508, 2613
PspPPI RGGWCCY 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 1300
PsuI RGATCY 5 cut(s) 388, 608, 628, 1246, 1456
PsyI GACNNNGTC 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 746
RruI TCGCGA 1 cut(s) 2712
RsaI GTAC 2 cut(s) 314, 382
RsaNI GTAC 2 cut(s) 313, 381
RseI CAYNNNNRTG 2 cut(s) 1775, 2112
SacI GAGCTC 2 cut(s) 304, 2445
SaqAI TTAA 9 cut(s) 89, 693, 728, 888, 987, 1251, 1349, 1842, 2493
SatI GCNGC 4 cut(s) 1848, 2060, 2178, 2595
Sau96I GGNCC 5 cut(s) 4, 198, 2117, 2508, 2613
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 4 cut(s) 691, 745, 2476, 2480
ScrFI CCNGG 2 cut(s) 218, 1641
SduI GDGCHC 4 cut(s) 304, 487, 943, 2445
SfaNI GCATC 9 cut(s) 640, 775, 1002, 1550, 2002, 2164, 2311, 2617, 2639
SfcI CTRYAG 4 cut(s) 384, 1068, 1292, 2416
SinI GGWCC 4 cut(s) 4, 198, 2117, 2613
SmiMI CAYNNNNRTG 2 cut(s) 1775, 2112
SmlI CTYRAG 5 cut(s) 82, 613, 986, 1210, 1319
SmoI CTYRAG 5 cut(s) 82, 613, 986, 1210, 1319
SspI AATATT 1 cut(s) 2378
SspMI CTAG 2 cut(s) 2558, 2600
SstI GAGCTC 2 cut(s) 304, 2445
StyD4I CCNGG 2 cut(s) 216, 1639
StyI CCWWGG 5 cut(s) 40, 407, 523, 816, 1903
TaaI ACNGT 8 cut(s) 214, 254, 448, 919, 1098, 1664, 2231, 2341
TaiI ACGT 4 cut(s) 1318, 2334, 2570, 2577
TaqI TCGA 5 cut(s) 142, 583, 876, 908, 2005
TatI WGTACW 2 cut(s) 312, 380
TfiI GAWTC 9 cut(s) 119, 139, 853, 1297, 1330, 1973, 2040, 2051, 2220
Tru1I TTAA 9 cut(s) 89, 693, 728, 888, 987, 1251, 1349, 1842, 2493
Tru9I TTAA 9 cut(s) 89, 693, 728, 888, 987, 1251, 1349, 1842, 2493
TscAI CASTG 5 cut(s) 273, 573, 1263, 2145, 2344
TseFI GTSAC 6 cut(s) 564, 1127, 1235, 1768, 2332, 2468
TseI GCWGC 4 cut(s) 1847, 2059, 2177, 2594
Tsp45I GTSAC 6 cut(s) 564, 1127, 1235, 1768, 2332, 2468
TspGWI ACGGA 3 cut(s) 612, 793, 2605
TspRI CASTG 5 cut(s) 273, 573, 1263, 2145, 2344
Tth111I GACNNNGTC 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 1232
Vha464I CTTAAG 1 cut(s) 986
VneI GTGCAC 1 cut(s) 939
VpaK11BI GGWCC 4 cut(s) 4, 198, 2117, 2613
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 5 cut(s) 152, 1035, 1392, 1810, 2007
XceI RCATGY 1 cut(s) 1581
XcmI CCANNNNNNNNNTGG 2 cut(s) 1100, 1924
XspI CTAG 2 cut(s) 2558, 2600
ZrmI AGTACT 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 2632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.