Rorug07G0132900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006671
Physical Location & Seq
Forward (+)
10464792 .. 10465271
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0132900.1

Sequence Viewer

Length: 480 bp
ATGCAGGAACCGGAGCTCCATGACCTCTCCGACAACGCCGAGGTGGTTTACATGAAGGATAATGTGAGCATCCACCAGGCCATGCTTGCATCAGAGAGGATTAGTGGACGATTAAGGCTAATCAAGAAGGGCTCTTGTCTATTCATGGCATGGATTCCGTACTCAAATGCCATGGTTTGTGAGAAAGATAGAATTATTTATAGTATAAGGGAGGTGCCATTGACAGAGGTTCGGTCCATTCGACGCCAAACTGGATGGCAGTACATTATCGTCGTTTTGGCATCTGGACTTGCGCTTCCCCCTCTCTACTTGTACAACGGAGGAGTCAAGGAGTTCCTTGCTACAATTAAGCAGCATGTGTCTATTGTGATATCAGCTGAGGATGATAATGTATTTCTTGTCAATGATTTTCAAAATCCTCTAACAACTATAATTTCGAGGCAAAGGCAAAAGGTGTTAGGATTGCGGCTCAATATCTAA

Protein Analysis

159

Amino Acids

18.16

Weight (kDa)

8.58

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_RBD PF12068 64 - 143 3.3e-06 Rab-binding domain (RBD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 3 cut(s) 161, 263, 314
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 75
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 2 cut(s) 16, 377
AluI AGCT 2 cut(s) 16, 377
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 352
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 18, 134
Bbv12I GWGCWC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 77
BisI GCNGC 2 cut(s) 353, 467
BlsI GCNGC 2 cut(s) 354, 468
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 9, 216
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 3 cut(s) 78, 98, 290
Bpu10I CCTNAGC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 39, 171
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 39, 171
BseGI GGATG 3 cut(s) 69, 260, 388
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 11
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 18, 134
Bsp1407I TGTACA 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 9, 216
BspT107I GGYRCC 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 39, 171
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 3 cut(s) 69, 260, 388
BstHHI GCGC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 3 cut(s) 69, 260, 388
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 252
Csp6I GTAC 3 cut(s) 160, 262, 313
CviAII CATG 7 cut(s) 20, 52, 82, 145, 150, 172, 356
CviJI RGCY 6 cut(s) 16, 80, 118, 132, 377, 469
CviKI_1 RGCY 6 cut(s) 16, 80, 118, 132, 377, 469
CviQI GTAC 3 cut(s) 160, 262, 313
DdeI CTNAG 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 18, 134
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 18, 134
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 7 cut(s) 23, 55, 85, 148, 153, 175, 359
FatI CATG 7 cut(s) 19, 51, 81, 144, 149, 171, 355
Fnu4HI GCNGC 2 cut(s) 353, 467
FokI GGATG 3 cut(s) 56, 267, 395
FriOI GRGCYC 2 cut(s) 18, 134
Fsp4HI GCNGC 2 cut(s) 353, 467
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 353, 467
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 7 cut(s) 23, 55, 85, 148, 153, 175, 359
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 2 cut(s) 154, 324
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 2 cut(s) 49, 107
Hpy188I TCNGA 2 cut(s) 31, 94
Hpy188III TCNNGA 2 cut(s) 124, 285
Hpy8I GTNNAC 2 cut(s) 49, 107
Hpy99I CGWCG 2 cut(s) 246, 275
HpyAV CCTTC 2 cut(s) 49, 121
HpyCH4V TGCA 2 cut(s) 4, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 7 cut(s) 23, 55, 85, 148, 153, 175, 359
HspAI GCGC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 13, 21
LpnPI CCDG 5 cut(s) 24, 62, 89, 237, 270
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 3 cut(s) 78, 98, 290
MhlI GDGCHC 2 cut(s) 18, 134
MluCI AATT 3 cut(s) 192, 345, 432
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 54
MseI TTAA 2 cut(s) 113, 348
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 171
NlaIII CATG 7 cut(s) 23, 55, 85, 148, 153, 175, 359
NlaIV GGNNCC 2 cut(s) 9, 216
NmeAIII GCCGAG 1 cut(s) 64
NspI RCATGY 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 354, 468
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 9, 216
PspPI GGNCC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 161, 263, 314
RsaNI GTAC 3 cut(s) 160, 262, 313
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 113, 348
SatI GCNGC 2 cut(s) 353, 467
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 2 cut(s) 18, 134
SetI ASST 7 cut(s) 18, 27, 45, 216, 231, 379, 456
SfaNI GCATC 3 cut(s) 78, 98, 290
SinI GGWCC 1 cut(s) 234
Sse9I AATT 3 cut(s) 192, 345, 432
SsiI CCGC 1 cut(s) 466
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 171
TaqI TCGA 2 cut(s) 241, 437
TaqII GACCGA 1 cut(s) 222
TasI AATT 3 cut(s) 192, 345, 432
TatI WGTACW 2 cut(s) 261, 312
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 113, 348
Tru9I TTAA 2 cut(s) 113, 348
TseI GCWGC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 68, 133
TspGWI ACGGA 2 cut(s) 147, 333
VpaK11BI GGWCC 1 cut(s) 234
XceI RCATGY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.