Rmu_sc0007544.1_g000001

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007544.1
OG0007229
Physical Location & Seq
Forward (+)
1 .. 4500
4500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007544.1_g000001.1.cds

Sequence Viewer

Length: 1281 bp
ggatctcaagcacatcactttacacgttcaactgaacataatagcggtgttttcgggagattccgctcaaaaaatagggcatcgtcacttaatgaaaacattctgggctgccgaactgttgatctgtgcacttcaacaattaagatggatgcagaagatacagaccttcgactttgcttcagaataatatctccatcaaaaacgtacacgttgcaggctgaaaatgaggccgataggatggattggatgaacaaaataacaggagccattacatctctgctgaattttcggcttcttgaacagccacatccgggaaatgcgaatctcgagggtagtgaattaggtgttggtgatgttcgtcgagtagctagctgtgaaagcttacataacatacacttcaatagagttgattccgtttctactgctcttaggggaatccctggaaatgatctttgtgcagagtgcagtagtcctgagccggattgggcttctctcaatcttgggatactgttatgcattgaatgttctggtgctcatcggaatcttggtgtacatatttcaaaggtgagatctataacattagatgtcaaagtttgggaaccgacaattgtggacttatttcgcaacttgggtaatgcctactgtaattctgtgtgggagggaaagcttcaactcaaaaacgaaagattggagggctcaaatgccattagggcttcaatttcaaaaccatgtccccaagatgcaattcagcataaggaaatttacattcaagcaaagtcaccttctaattttggtggcggtcaccggcacttaactttttttttccctgatatgaatatcgtcgataccacctatgatgatgtggttggcgatgatttatatcaccatgttgatgcacaagactcagagttgagttttcccttaatagagagcaaacagcacgatccagcagcatgtgagagaatcaagacttccaatgatcaagggaactgccttcaaggatgttcattattgcatctggcttgtcactctggcaatgcaatgatgctcgaattgttgctgcaatttggtgccaacataaataggcgtgatttccatggaaggactcctttacaccactgtatctgcagtgggaataattcgctggcaaagttcctacttagaagaggtgcacgcccatcaattcaagacggaggagggcaaagcgtactggaaagagcaatggagatgggagcgattacggatgaggatctattcataaaactttctgaacatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_5 ArfGap BAR_3 PH

Protein Analysis

426

Amino Acids

47.22

Weight (kDa)

5.98

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 3 cut(s) 45, 64, 798
AclWI GGATC 3 cut(s) 10, 938, 1257
AcsI RAATTY 2 cut(s) 283, 759
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 3 cut(s) 206, 552, 1209
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 2 cut(s) 23, 207
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 4 cut(s) 330, 362, 729, 761
AluBI AGCT 4 cut(s) 368, 372, 381, 667
AluI AGCT 4 cut(s) 368, 372, 381, 667
Alw21I GWGCWC 3 cut(s) 131, 535, 1174
Alw44I GTGCAC 2 cut(s) 127, 1170
AlwI GGATC 3 cut(s) 10, 938, 1257
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 228
ApaLI GTGCAC 2 cut(s) 127, 1170
ApeKI GCWGC 3 cut(s) 108, 950, 1060
ApoI RAATTY 2 cut(s) 283, 759
Asp700I GAANNNNTTC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 5 cut(s) 362, 577, 771, 794, 875
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 326
BaeGI GKGCMC 2 cut(s) 131, 1174
BaeI ACNNNNGTAYC 2 cut(s) 1105, 1138
BanI GGYRCC 1 cut(s) 1070
BanII GRGCYC 1 cut(s) 698
Bbv12I GWGCWC 3 cut(s) 131, 535, 1174
BbvI GCAGC 3 cut(s) 95, 962, 1047
BccI CCATC 5 cut(s) 139, 202, 232, 1186, 1222
BciT130I CCWGG 1 cut(s) 441
BciVI GTATCC 1 cut(s) 498
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 1 cut(s) 312
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 1126
BfuI GTATCC 1 cut(s) 498
BglI GCCNNNNNGGC 1 cut(s) 710
BglII AGATCT 1 cut(s) 569
BisI GCNGC 3 cut(s) 109, 951, 1061
BlsI GCNGC 3 cut(s) 110, 952, 1062
Bme1390I CCNGG 2 cut(s) 312, 441
BmeT110I CYCGRG 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 265, 600, 1072
BmrFI CCNGG 2 cut(s) 312, 441
BmsI GCATC 6 cut(s) 89, 139, 730, 883, 1024, 1035
BmtI GCTAGC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 2 cut(s) 879, 1248
BsaJI CCNNGG 2 cut(s) 439, 1096
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 1 cut(s) 804
Bse1I ACTGG 1 cut(s) 1215
Bse3DI GCAATG 3 cut(s) 1042, 1047, 1227
Bse8I GATNNNNATC 2 cut(s) 879, 1248
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 439, 1096
BseGI GGATG 6 cut(s) 154, 243, 252, 307, 1007, 1249
BseJI GATNNNNATC 2 cut(s) 879, 1248
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 3 cut(s) 1042, 1047, 1227
BseMII CTCAG 2 cut(s) 465, 918
BseNI ACTGG 1 cut(s) 1215
BseRI GAGGAG 1 cut(s) 1209
BseSI GKGCMC 2 cut(s) 131, 1174
BseXI GCAGC 3 cut(s) 95, 962, 1047
BsgI GTGCAG 2 cut(s) 477, 484
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 1070
BsiHKAI GWGCWC 3 cut(s) 131, 535, 1174
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 3 cut(s) 311, 479, 805
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 131, 535, 698, 1174
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
Bsp19I CCATGG 1 cut(s) 1096
BspACI CCGC 3 cut(s) 45, 64, 798
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 466, 917
BspLI GGNNCC 3 cut(s) 265, 600, 1072
BspMAI CTGCAG 1 cut(s) 1130
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 3 cut(s) 10, 938, 1257
BspT107I GGYRCC 1 cut(s) 1070
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 3 cut(s) 1042, 1047, 1227
BsrFI RCCGGY 1 cut(s) 804
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 1 cut(s) 1215
BssAI RCCGGY 1 cut(s) 804
BssECI CCNNGG 2 cut(s) 439, 1096
BssMI GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
BssT1I CCWWGG 1 cut(s) 1096
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 118, 510, 644, 1121
Bst6I CTCTTC 1 cut(s) 1159
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 4 cut(s) 216, 370, 1146, 1174
BstDEI CTNAG 4 cut(s) 428, 474, 904, 1160
BstDSI CCRYGG 1 cut(s) 1096
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 6 cut(s) 154, 243, 252, 307, 1007, 1249
BstKTI GATC 7 cut(s) 5, 124, 451, 572, 946, 982, 1252
BstMBI GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
BstMWI GCNNNNNNNGC 2 cut(s) 378, 710
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 957
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 2 cut(s) 310, 439
BstSFI CTRYAG 1 cut(s) 1126
BstSLI GKGCMC 2 cut(s) 131, 1174
BstV1I GCAGC 3 cut(s) 95, 962, 1047
BstX2I RGATCY 3 cut(s) 2, 569, 1249
BstYI RGATCY 3 cut(s) 2, 569, 1249
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 1096
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 6 cut(s) 154, 243, 252, 307, 1007, 1249
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 2 cut(s) 1117, 1135
Cac8I GCNNGC 4 cut(s) 216, 370, 1146, 1174
Cfr10I RCCGGY 1 cut(s) 804
Csp6I GTAC 3 cut(s) 205, 551, 1208
CviAII CATG 5 cut(s) 729, 887, 954, 1097, 1274
CviQI GTAC 3 cut(s) 205, 551, 1208
DdeI CTNAG 4 cut(s) 428, 474, 904, 1160
DpnI GATC 7 cut(s) 4, 123, 450, 571, 945, 981, 1251
DpnII GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
Eam1104I CTCTTC 1 cut(s) 1159
EarI CTCTTC 1 cut(s) 1159
Eco130I CCWWGG 1 cut(s) 1096
Eco24I GRGCYC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 326
Eco91I GGTNACC 1 cut(s) 800
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 1096
EcoT22I ATGCAT 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 1096
FaeI CATG 5 cut(s) 732, 890, 957, 1100, 1277
FalI AAGNNNNNCTT 2 cut(s) 1093, 1125
FaqI GGGAC 1 cut(s) 717
FatI CATG 5 cut(s) 728, 886, 953, 1096, 1273
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 3 cut(s) 109, 951, 1061
FokI GGATG 6 cut(s) 161, 250, 259, 294, 1014, 1256
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 3 cut(s) 109, 951, 1061
FspBI CTAG 1 cut(s) 369
GluI GCNGC 3 cut(s) 109, 951, 1061
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 311, 479, 805
Hin1II CATG 5 cut(s) 732, 890, 957, 1100, 1277
HindIII AAGCTT 2 cut(s) 379, 665
HinfI GANTC 8 cut(s) 60, 322, 410, 435, 541, 902, 963, 1105
HpaII CCGG 3 cut(s) 311, 479, 805
HphI GGTGA 5 cut(s) 362, 577, 771, 794, 875
Hpy166II GTNNAC 5 cut(s) 129, 207, 551, 613, 1172
Hpy188I TCNGA 4 cut(s) 182, 540, 907, 1270
Hpy188III TCNNGA 6 cut(s) 55, 296, 326, 473, 967, 1187
Hpy8I GTNNAC 5 cut(s) 129, 207, 551, 613, 1172
Hpy99I CGWCG 2 cut(s) 363, 845
HpyAV CCTTC 4 cut(s) 176, 792, 1004, 1095
HpyCH4III ACNGT 4 cut(s) 118, 510, 644, 1121
HpyCH4IV ACGT 3 cut(s) 25, 203, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 710
HpyF3I CTNAG 4 cut(s) 428, 474, 904, 1160
HpySE526I ACGT 3 cut(s) 25, 203, 209
Hsp92II CATG 5 cut(s) 732, 890, 957, 1100, 1277
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
LmnI GCTCC 2 cut(s) 263, 1232
Lsp1109I GCAGC 3 cut(s) 95, 962, 1047
LweI GCATC 6 cut(s) 89, 139, 730, 883, 1024, 1035
MaeI CTAG 1 cut(s) 369
MaeII ACGT 3 cut(s) 25, 203, 209
MaeIII GTNAC 4 cut(s) 84, 777, 800, 1025
MalI GATC 7 cut(s) 4, 123, 450, 571, 945, 981, 1251
MbiI CCGCTC 1 cut(s) 66
MboI GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
MboII GAAGA 2 cut(s) 167, 1176
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 3 cut(s) 2, 569, 1249
MhlI GDGCHC 4 cut(s) 131, 535, 698, 1174
MlyI GAGTC 2 cut(s) 896, 1099
MnlI CCTC 8 cut(s) 220, 322, 652, 685, 1160, 1187, 1190, 1240
Mph1103I ATGCAT 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 4 cut(s) 90, 141, 812, 923
MslI CAYNNNNRTG 1 cut(s) 891
MspI CCGG 3 cut(s) 311, 479, 805
MspR9I CCNGG 2 cut(s) 312, 441
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 378, 710
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 1096
NdeII GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 5 cut(s) 732, 890, 957, 1100, 1277
NlaIV GGNNCC 3 cut(s) 265, 600, 1072
NmuCI GTSAC 4 cut(s) 84, 777, 800, 1025
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 1 cut(s) 957
PaeR7I CTCGAG 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 6 cut(s) 60, 322, 410, 435, 541, 963
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 3 cut(s) 110, 952, 1062
PleI GAGTC 2 cut(s) 896, 1099
PpsI GAGTC 2 cut(s) 896, 1099
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 1 cut(s) 800
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 265, 600, 1072
PstI CTGCAG 1 cut(s) 1130
PsuI RGATCY 3 cut(s) 2, 569, 1249
RsaI GTAC 3 cut(s) 206, 552, 1209
RsaNI GTAC 3 cut(s) 205, 551, 1208
RseI CAYNNNNRTG 1 cut(s) 891
SaqAI TTAA 4 cut(s) 90, 141, 812, 923
SatI GCNGC 3 cut(s) 109, 951, 1061
Sau3AI GATC 7 cut(s) 2, 121, 448, 569, 943, 979, 1249
SchI GAGTC 2 cut(s) 896, 1099
ScrFI CCNGG 2 cut(s) 312, 441
SduI GDGCHC 4 cut(s) 131, 535, 698, 1174
SfaNI GCATC 6 cut(s) 89, 139, 730, 883, 1024, 1035
SfcI CTRYAG 1 cut(s) 1126
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 891
SmlI CTYRAG 2 cut(s) 6, 326
SmoI CTYRAG 2 cut(s) 6, 326
SsiI CCGC 3 cut(s) 45, 64, 798
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 310, 439
StyI CCWWGG 1 cut(s) 1096
TaaI ACNGT 4 cut(s) 118, 510, 644, 1121
TaiI ACGT 3 cut(s) 28, 206, 212
TaqI TCGA 5 cut(s) 169, 327, 361, 843, 1050
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 6 cut(s) 60, 322, 410, 435, 541, 963
Tru1I TTAA 4 cut(s) 90, 141, 812, 923
Tru9I TTAA 4 cut(s) 90, 141, 812, 923
TscAI CASTG 2 cut(s) 1124, 1135
TseFI GTSAC 4 cut(s) 84, 777, 800, 1025
TseI GCWGC 3 cut(s) 108, 950, 1060
Tsp45I GTSAC 4 cut(s) 84, 777, 800, 1025
TspDTI ATGAA 5 cut(s) 108, 263, 848, 996, 1246
TspGWI ACGGA 3 cut(s) 403, 1206, 1256
TspRI CASTG 2 cut(s) 1124, 1135
VneI GTGCAC 2 cut(s) 127, 1170
XapI RAATTY 2 cut(s) 283, 759
XceI RCATGY 1 cut(s) 957
XhoI CTCGAG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.