Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011173.1

Orthogroup ID

OG0005674

Physical Location & Seq

Genomic Coordinates Forward (+)

47697 .. 49309

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011173.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

atggcggccatatccaacgcccaggtcctcgccggtcccacgaatccaatggtcacgcctctcctcaccgatctctaccagttcaccatggcctacgcttactggaaagccggcaagcacaaggaacgagccgtgtttgatttgtatttccgcaagaatccatttggcggcgaatacacagtgtttgctggattagaggaatgcatcaaattcattgctaatttcaaattggccgacgacgaaatcgatttcgtccgccaatccttgtcctcttcatgtgagctagaggaaggattctataagtatctgagtggagttgactgttccgaagttgaagtctatgctatccaagaaggatcagtcgtttttccaaaggttcctctcgttagagttgaaggaccaatcgctgtggttcagttactcgaaactacattcttgaatctcattaattatgcgtcattagttgctacaaatgccgcaaggcatcgtttcgttgctggagaatctaaaatgctacttgagtttggacttcgacgagctcagggacctgatggtggaataggggcatctaggtactgctacatgggaggatttcatgcaacgagtaatgttgccgctggaaagatatttgggatcccgcttcgtggaacacattcgcatgcttttatcagctcattcatgagcccagacgagattatagataaatcactttgttggtgccaatttcggcatcaacgagtcaacggaggttccgttgaaatccaagtccttggtcgttcacctcttgtgactgaaggtatggcctcgggcttctttcatctgatcctgggcctccaagctaccttgtttggtgaaactgatagtctcgtctcggacttccttcacctcttgttgggcttcctccacctcatgttgggcttccaagcccctttcttgggtggaactgatggtctcgtcttggacttccaccacctcgtgttgggcttccaccacctcgtgttgggcttccaagcccctttcttgggtggaactgatggtctcgtctcggacttccttcacctcgtgttgggcttccaccacctcgtgttgggcttcctccacctcgtgttgggcttccaagctcctttctggggtggaactgatggtctcgtctcagacttccttcacctcatgttgggcttccaccacctcgtgttgggcttccaagctcctttcttgggtggaaatgatggtctcgtctcagacttccttcacctcatgttgggcttccaccacctcgtgttgggcttccaagctcctttcttgggtggaaatgatggtctcgtctcagacttccttcacctcatgttgggcttccaccacctcgtgttgggcttccaagctcctttcttgggtggaaatgatggtctcgtctcagacttccttcacctcatgttgggcttccaccacctcgagttggcggagccccatggaaaggacctggaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016874 GO:0016879 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NAPRTase

Protein Analysis

496

Amino Acids

54.37

Weight (kDa)

5.72

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23420 AT2G23420 AT4G36940
fragaria_vesca	FvH4_1g16212 FvH4_1g16212 FvH4_1g16212
malus_domestica	MD02G1174500.v1.1 MD15G1285500.v1.1
prunus_persica	Prupe.7G131500_v2.0.a1 Prupe.7G131500_v2.0.a1
pyrus_communis	pycom02g14080 pycom15g24850
rosa_chinensis	RchiOBHm_Chr1g0342971 RchiOBHm_Chr2g0105921 RchiOBHm_Chr7g0236011
rosa_laevigata	RLG00000017470
rosa_multiflora	Rmu_sc0004367.1_g000012 Rmu_sc0008183.1_g000025 Rmu_sc0011173.1_g000015
rosa_roxburghii	Rroxscaffold_2G00137570 Rroxscaffold_2G00137720
rosa_rugosa	Rorug02G0132000
rosa_samantha	Rh2BG192500 Rh2DG189000 Rh7BG420500 Rh7CG469100
rosa_wichuraiana	Rw2G014320 Rw7G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	717
AciI	CCGC	8 cut(s)	5, 151, 168, 256, 477, 615, 638, 1460
AclWI	GGATC	4 cut(s)	364, 628, 641, 817
AcoI	YGGCCR	2 cut(s)	6, 231
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	813
AdeI	CACNNNGTG	8 cut(s)	976, 997, 1063, 1084, 1105, 1192, 1279, 1366
AfaI	GTAC	1 cut(s)	575
AgsI	TTSAA	5 cut(s)	226, 335, 395, 439, 758
AjnI	CCWGG	3 cut(s)	21, 825, 1479
AluBI	AGCT	8 cut(s)	283, 539, 672, 839, 1121, 1208, 1295, 1382
AluI	AGCT	8 cut(s)	283, 539, 672, 839, 1121, 1208, 1295, 1382
Alw21I	GWGCWC	1 cut(s)	541
AlwI	GGATC	4 cut(s)	364, 628, 641, 817
Ama87I	CYCGRG	2 cut(s)	805, 1451
AoxI	GGCC	5 cut(s)	6, 90, 231, 801, 829
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	652
AspS9I	GGNCC	6 cut(s)	25, 35, 398, 545, 829, 1477
AvaI	CYCGRG	2 cut(s)	805, 1451
AvaII	GGWCC	5 cut(s)	25, 35, 398, 545, 1477
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	717
BanII	GRGCYC	3 cut(s)	541, 686, 1467
BauI	CACGAG	8 cut(s)	974, 995, 1061, 1082, 1103, 1190, 1277, 1364
Bbv12I	GWGCWC	1 cut(s)	541
BccI	CCATC	7 cut(s)	545, 941, 1028, 1136, 1223, 1310, 1397
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	3 cut(s)	23, 827, 1481
BfaI	CTAG	2 cut(s)	284, 570
BisI	GCNGC	4 cut(s)	6, 169, 477, 615
BlsI	GCNGC	4 cut(s)	7, 170, 478, 616
Bme1390I	CCNGG	3 cut(s)	23, 827, 1481
Bme18I	GGWCC	5 cut(s)	25, 35, 398, 545, 1477
BmeT110I	CYCGRG	2 cut(s)	805, 1451
BmgT120I	GGNCC	6 cut(s)	25, 35, 398, 545, 829, 1477
BmiI	GGNNCC	7 cut(s)	37, 378, 546, 635, 719, 751, 1464
BmrFI	CCNGG	3 cut(s)	23, 827, 1481
BmsI	GCATC	4 cut(s)	213, 493, 575, 739
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	246
BsaI	GGTCTC	6 cut(s)	956, 1043, 1151, 1238, 1325, 1412
BsaJI	CCNNGG	6 cut(s)	21, 87, 769, 804, 826, 1468
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bse118I	RCCGGY	2 cut(s)	32, 110
Bse1I	ACTGG	2 cut(s)	79, 107
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	23, 827, 1481
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	6 cut(s)	21, 87, 769, 804, 826, 1468
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	6 cut(s)	299, 554, 1167, 1254, 1341, 1428
BseNI	ACTGG	2 cut(s)	79, 107
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	5 cut(s)	8, 92, 233, 803, 831
BshNI	GGYRCC	1 cut(s)	717
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	2 cut(s)	805, 1451
BsiSI	CCGG	2 cut(s)	33, 111
BslFI	GGGAC	2 cut(s)	21, 558
BsmBI	CGTCTC	6 cut(s)	874, 1048, 1156, 1243, 1330, 1417
BsmFI	GGGAC	2 cut(s)	21, 558
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	5 cut(s)	8, 92, 233, 803, 831
Bso31I	GGTCTC	6 cut(s)	956, 1043, 1151, 1238, 1325, 1412
BsoBI	CYCGRG	2 cut(s)	805, 1451
Bsp1286I	GDGCHC	3 cut(s)	541, 686, 1467
Bsp143I	GATC	4 cut(s)	70, 356, 633, 822
Bsp19I	CCATGG	2 cut(s)	87, 1468
BspACI	CCGC	8 cut(s)	5, 151, 168, 256, 477, 615, 638, 1460
BspANI	GGCC	5 cut(s)	8, 92, 233, 803, 831
BspCNI	CTCAG	6 cut(s)	300, 553, 1166, 1253, 1340, 1427
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	678
BspLI	GGNNCC	7 cut(s)	37, 378, 546, 635, 719, 751, 1464
BspPI	GGATC	4 cut(s)	364, 628, 641, 817
BspT107I	GGYRCC	1 cut(s)	717
BspTNI	GGTCTC	6 cut(s)	956, 1043, 1151, 1238, 1325, 1412
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	32, 110
BsrI	ACTGG	2 cut(s)	79, 107
BssAI	RCCGGY	2 cut(s)	32, 110
BssECI	CCNNGG	6 cut(s)	21, 87, 769, 804, 826, 1468
BssMI	GATC	4 cut(s)	70, 356, 633, 822
BssSI	CACGAG	8 cut(s)	974, 995, 1061, 1082, 1103, 1190, 1277, 1364
BssT1I	CCWWGG	3 cut(s)	87, 769, 1468
Bst2BI	CACGAG	8 cut(s)	974, 995, 1061, 1082, 1103, 1190, 1277, 1364
Bst2UI	CCWGG	3 cut(s)	23, 827, 1481
Bst4CI	ACNGT	2 cut(s)	181, 323
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	112, 116, 660
BstDEI	CTNAG	6 cut(s)	308, 540, 1153, 1240, 1327, 1414
BstDSI	CCRYGG	2 cut(s)	87, 1468
BstKTI	GATC	4 cut(s)	73, 359, 636, 825
BstMBI	GATC	4 cut(s)	70, 356, 633, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	3 cut(s)	23, 827, 1481
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	21, 825, 1479
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	633
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	5 cut(s)	8, 92, 233, 803, 831
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	2 cut(s)	87, 1468
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	112, 116, 660
CciI	TCATGA	1 cut(s)	678
Cfr10I	RCCGGY	2 cut(s)	32, 110
Cfr13I	GGNCC	6 cut(s)	25, 35, 398, 545, 829, 1477
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	6 cut(s)	308, 540, 1153, 1240, 1327, 1414
DpnI	GATC	4 cut(s)	72, 358, 635, 824
DpnII	GATC	4 cut(s)	70, 356, 633, 822
DraIII	CACNNNGTG	8 cut(s)	976, 997, 1063, 1084, 1105, 1192, 1279, 1366
EaeI	YGGCCR	2 cut(s)	6, 231
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	2 cut(s)	245, 1475
Ecl136II	GAGCTC	1 cut(s)	539
Eco130I	CCWWGG	3 cut(s)	87, 769, 1468
Eco24I	GRGCYC	3 cut(s)	541, 686, 1467
Eco31I	GGTCTC	6 cut(s)	956, 1043, 1151, 1238, 1325, 1412
Eco47I	GGWCC	5 cut(s)	25, 35, 398, 545, 1477
Eco53kI	GAGCTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	813
Eco88I	CYCGRG	2 cut(s)	805, 1451
EcoICRI	GAGCTC	1 cut(s)	539
EcoO109I	RGGNCCY	3 cut(s)	25, 545, 1477
EcoRII	CCWGG	3 cut(s)	21, 825, 1479
EcoT14I	CCWWGG	3 cut(s)	87, 769, 1468
EcoT22I	ATGCAT	1 cut(s)	206
EcoT38I	GRGCYC	3 cut(s)	541, 686, 1467
ErhI	CCWWGG	3 cut(s)	87, 769, 1468
Esp3I	CGTCTC	6 cut(s)	874, 1048, 1156, 1243, 1330, 1417
FaqI	GGGAC	2 cut(s)	21, 558
FauI	CCCGC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	6, 169, 477, 615
FriOI	GRGCYC	3 cut(s)	541, 686, 1467
Fsp4HI	GCNGC	4 cut(s)	6, 169, 477, 615
FspBI	CTAG	2 cut(s)	284, 570
GluI	GCNGC	4 cut(s)	6, 169, 477, 615
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	5 cut(s)	8, 92, 233, 803, 831
HapII	CCGG	2 cut(s)	33, 111
HgaI	GACGC	1 cut(s)	444
HincII	GTYRAC	2 cut(s)	319, 742
HindII	GTYRAC	2 cut(s)	319, 742
HinfI	GANTC	6 cut(s)	43, 157, 294, 439, 503, 738
HpaII	CCGG	2 cut(s)	33, 111
Hpy166II	GTNNAC	4 cut(s)	84, 319, 742, 779
Hpy188I	TCNGA	9 cut(s)	309, 328, 822, 874, 1048, 1156, 1243, 1330, 1417
Hpy188III	TCNNGA	2 cut(s)	436, 679
Hpy8I	GTNNAC	4 cut(s)	84, 319, 742, 779
Hpy99I	CGWCG	3 cut(s)	239, 242, 537
HpyCH4III	ACNGT	2 cut(s)	181, 323
HpyCH4V	TGCA	2 cut(s)	204, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	6 cut(s)	308, 540, 1153, 1240, 1327, 1414
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	70, 356, 633, 822
LmnI	GCTCC	5 cut(s)	1126, 1213, 1300, 1387, 1462
LweI	GCATC	4 cut(s)	213, 493, 575, 739
MaeI	CTAG	2 cut(s)	284, 570
MaeIII	GTNAC	3 cut(s)	52, 417, 787
MalI	GATC	4 cut(s)	72, 358, 635, 824
MboI	GATC	4 cut(s)	70, 356, 633, 822
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	3 cut(s)	541, 686, 1467
MluCI	AATT	5 cut(s)	209, 220, 227, 448, 722
MlyI	GAGTC	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	33, 111
MspR9I	CCNGG	3 cut(s)	23, 827, 1481
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	3 cut(s)	23, 827, 1481
MwoI	GCNNNNNNNGC	1 cut(s)	473
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	2 cut(s)	87, 1468
NdeII	GATC	4 cut(s)	70, 356, 633, 822
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	7 cut(s)	37, 378, 546, 635, 719, 751, 1464
NmuCI	GTSAC	2 cut(s)	52, 787
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	1 cut(s)	662
PaeI	GCATGC	1 cut(s)	662
PaeR7I	CTCGAG	1 cut(s)	1451
PagI	TCATGA	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 733, 750
PctI	GAATGC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	5 cut(s)	43, 157, 294, 439, 503
PkrI	GCNGC	4 cut(s)	7, 170, 478, 616
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PpuMI	RGGWCCY	3 cut(s)	25, 545, 1477
PshBI	ATTAAT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	541
Psp5II	RGGWCCY	3 cut(s)	25, 545, 1477
Psp6I	CCWGG	3 cut(s)	21, 825, 1479
PspGI	CCWGG	3 cut(s)	21, 825, 1479
PspN4I	GGNNCC	7 cut(s)	37, 378, 546, 635, 719, 751, 1464
PspPI	GGNCC	6 cut(s)	25, 35, 398, 545, 829, 1477
PspPPI	RGGWCCY	3 cut(s)	25, 545, 1477
PspXI	VCTCGAGB	1 cut(s)	1451
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	6, 169, 477, 615
Sau3AI	GATC	4 cut(s)	70, 356, 633, 822
Sau96I	GGNCC	6 cut(s)	25, 35, 398, 545, 829, 1477
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	3 cut(s)	23, 827, 1481
SduI	GDGCHC	3 cut(s)	541, 686, 1467
SfaNI	GCATC	4 cut(s)	213, 493, 575, 739
Sfr274I	CTCGAG	1 cut(s)	1451
SinI	GGWCC	5 cut(s)	25, 35, 398, 545, 1477
SlaI	CTCGAG	1 cut(s)	1451
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	518, 1451
SmoI	CTYRAG	2 cut(s)	518, 1451
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	5 cut(s)	209, 220, 227, 448, 722
SsiI	CCGC	8 cut(s)	5, 151, 168, 256, 477, 615, 638, 1460
SspMI	CTAG	2 cut(s)	284, 570
SstI	GAGCTC	1 cut(s)	541
StyD4I	CCNGG	3 cut(s)	21, 825, 1479
StyI	CCWWGG	3 cut(s)	87, 769, 1468
TaaI	ACNGT	2 cut(s)	181, 323
TaqI	TCGA	4 cut(s)	246, 423, 532, 1452
TasI	AATT	5 cut(s)	209, 220, 227, 448, 722
TauI	GCSGC	4 cut(s)	8, 171, 479, 617
TfiI	GAWTC	5 cut(s)	43, 157, 294, 439, 503
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	2 cut(s)	52, 787
Tsp45I	GTSAC	2 cut(s)	52, 787
TspDTI	ATGAA	5 cut(s)	202, 264, 584, 667, 806
TspGWI	ACGGA	2 cut(s)	742, 759
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	5 cut(s)	25, 35, 398, 545, 1477
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	1451
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	2 cut(s)	284, 570
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.