Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005674

Physical Location & Seq

Genomic Coordinates Reverse (-)

11400139 .. 11400607

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGTGTAAGCATGCTTGTTTTCTCAGTTTACAGGAATGTCACCGCGCTGCTTCTGCTGATTCCATTTGCATACTTTTTGGAGAAGAAAGATAGACCACCACTGAATATTTCCCTTGTCATGAAGTTTTTTCTCCTAGGACTTCTTGGGGTGACATGCAATCAAGGCTTGTATCTCTTTGGTTTAAAGAACACCTCCCCCACATTTGTTTCGACAATAGAGAATGCAGTCCCTGCAATAACATTTCTCATGGCTGCCTTATTCAGGCAAACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016874 GO:0016879 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NAPRTase

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

9.65

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	3 - 89	9.6e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23420 AT2G23420 AT4G36940
fragaria_vesca	FvH4_1g16212 FvH4_1g16212 FvH4_1g16212
malus_domestica	MD02G1174500.v1.1 MD15G1285500.v1.1
prunus_persica	Prupe.7G131500_v2.0.a1 Prupe.7G131500_v2.0.a1
pyrus_communis	pycom02g14080 pycom15g24850
rosa_chinensis	RchiOBHm_Chr1g0342971 RchiOBHm_Chr2g0105921 RchiOBHm_Chr7g0236011
rosa_laevigata	RLG00000017470
rosa_multiflora	Rmu_sc0004367.1_g000012 Rmu_sc0008183.1_g000025 Rmu_sc0011173.1_g000015
rosa_roxburghii	Rroxscaffold_2G00137570 Rroxscaffold_2G00137720
rosa_rugosa	Rorug02G0132000
rosa_samantha	Rh2BG192500 Rh2DG189000 Rh7BG420500 Rh7CG469100
rosa_wichuraiana	Rw2G014320 Rw7G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	49, 254
AspA2I	CCTAGG	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	34, 163
AvrII	CCTAGG	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	36, 241
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	50, 255
BlnI	CCTAGG	1 cut(s)	136
BlsI	GCNGC	2 cut(s)	51, 256
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	36, 241
Bsh1236I	CGCG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 165, 233
BstNSI	RCATGY	2 cut(s)	16, 159
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	36, 241
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	49
CviAII	CATG	4 cut(s)	13, 121, 156, 250
CviJI	RGCY	2 cut(s)	168, 254
CviKI_1	RGCY	2 cut(s)	168, 254
DdeI	CTNAG	1 cut(s)	25
DraI	TTTAAA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	16, 124, 159, 253
FaiI	YATR	5 cut(s)	14, 73, 122, 157, 251
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	12, 120, 155, 249
Fnu4HI	GCNGC	2 cut(s)	50, 255
Fsp4HI	GCNGC	2 cut(s)	50, 255
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	50, 255
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	16, 124, 159, 253
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	2 cut(s)	34, 163
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	71, 159, 227, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 165, 233
HpyF3I	CTNAG	1 cut(s)	25
Hsp92II	CATG	4 cut(s)	16, 124, 159, 253
HspAI	GCGC	1 cut(s)	47
LpnPI	CCDG	3 cut(s)	19, 246, 250
Lsp1109I	GCAGC	2 cut(s)	36, 241
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	40, 151
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	55, 165, 233
NlaIII	CATG	4 cut(s)	16, 124, 159, 253
NmuCI	GTSAC	2 cut(s)	40, 151
NspI	RCATGY	2 cut(s)	16, 159
PaeI	GCATGC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	51, 256
PstNI	CAGNNNCTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	50, 255
SetI	ASST	1 cut(s)	197
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	2 cut(s)	40, 151
TseI	GCWGC	2 cut(s)	49, 254
Tsp45I	GTSAC	2 cut(s)	40, 151
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	262
XceI	RCATGY	2 cut(s)	16, 159
XmaJI	CCTAGG	1 cut(s)	136
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.