Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013726.1

Orthogroup ID

OG0008345

Physical Location & Seq

Genomic Coordinates Reverse (-)

3492 .. 6278

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013726.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgaaggcttggagcacatctcatcttttctcttccgtgaagtctttgtcagacaaattaggaggcatgatttgttgtcgtggttcggcaaacaagtatagcaggctggatgcaaagcttgaaaagagaatggctgaatttaaaagaggttcttcaggccaaagcaattttaagtcaattgacagcataattatgaggttccctcagtttagggaagaactgaagaacataagaaatgtgtttgacctgtatgatgaggactcaaatggagctatagaccgcgaggaactgaagaaatgcttacagaaactgcaactccatctgacagcagaagagattgaggatctttttcattcatgtgacatggatgggagtgaagggatacaattcaatgaattcattgttcttctatgtctcatctatctattaaaggaccctcaaacgacatcgaagatagactctccacagctagaagcaacctttgatactgtcattgaagtatttttgtttctggataaaaatggtgatggaaaactgaacaagacagaagtggtgaaggcactgaatgaagcttctccgcgggagaaatctcctgctcatgtcagcaggaatcgattcaaggaaatggattgggacaaaagtgggaaggtgagtttcaggcagttcctctttgctttcatcgattgggttggaattgaaacagatgaagaaatatctgttaaggctaactgtatagagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

247

Amino Acids

28.33

Weight (kDa)

5.53

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24110 AT3G24110
fragaria_vesca	FvH4_4g15760
malus_domestica	MD04G1008500.v1.1
prunus_persica	Prupe.1G007100_v2.0.a1 Prupe.1G007100_v2.0.a1 Prupe.1G007100_v2.0.a1
pyrus_communis	pycom04g00630
rosa_chinensis	RchiOBHm_Chr4g0415381
rosa_laevigata	RLG00000008075
rosa_multiflora	Rmu_sc0013726.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359140
rosa_rugosa	Rorug04G0133500 Rorug04G0133500 Rorug04G0133500 Rorug04G0133600 Rorug04G0133700 Rorug04G0133700
rosa_samantha	Rh4AG194300 Rh4BG192700 Rh4CG205200 Rh4DG192000
rosa_wichuraiana	Rw4G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	282, 580
AciI	CCGC	3 cut(s)	280, 578, 580
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	137, 395
AcuI	CTGAAG	3 cut(s)	138, 242, 311
AgsI	TTSAA	5 cut(s)	122, 391, 497, 619, 698
AluBI	AGCT	4 cut(s)	118, 272, 469, 572
AluI	AGCT	4 cut(s)	118, 272, 469, 572
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	137, 395
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	3 cut(s)	536, 565, 661
AvaII	GGWCC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	3 cut(s)	327, 362, 521
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	200, 435
BmsI	GCATC	1 cut(s)	100
BplI	GAGNNNNNCTC	3 cut(s)	36, 187, 219
Bsa29I	ATCGAT	2 cut(s)	613, 681
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
BseCI	ATCGAT	2 cut(s)	613, 681
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	115, 373
BseMII	CTCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	282, 580
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	2 cut(s)	613, 681
BsiHKAI	GWGCWC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	280, 578, 580
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	2 cut(s)	613, 681
BspFNI	CGCG	2 cut(s)	282, 580
BspLI	GGNNCC	2 cut(s)	200, 435
BspPI	GGATC	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	490, 731
Bst6I	CTCTTC	2 cut(s)	37, 327
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	115, 373
BstFNI	CGCG	2 cut(s)	282, 580
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	2 cut(s)	282, 580
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	2 cut(s)	613, 681
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	2 cut(s)	613, 681
BtgI	CCRYGG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	115, 373
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	433
Cfr42I	CCGCGG	1 cut(s)	581
ClaI	ATCGAT	2 cut(s)	613, 681
CviAII	CATG	4 cut(s)	67, 357, 364, 599
CviJI	RGCY	9 cut(s)	8, 106, 118, 134, 159, 272, 469, 572, 725
CviKI_1	RGCY	9 cut(s)	8, 106, 118, 134, 159, 272, 469, 572, 725
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DraI	TTTAAA	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	37, 327
EarI	CTCTTC	2 cut(s)	37, 327
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	138, 242, 311
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	395
FaeI	CATG	4 cut(s)	70, 360, 367, 602
FalI	AAGNNNNNCTT	4 cut(s)	136, 168, 284, 316
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	4 cut(s)	66, 356, 363, 598
FauI	CCCGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	122, 380
FspBI	CTAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	70, 360, 367, 602
HindIII	AAGCTT	2 cut(s)	116, 570
HinfI	GANTC	4 cut(s)	260, 458, 610, 615
HphI	GGTGA	3 cut(s)	536, 565, 661
Hpy188I	TCNGA	2 cut(s)	52, 324
Hpy188III	TCNNGA	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	371, 550, 640
HpyCH4III	ACNGT	2 cut(s)	490, 731
HpyCH4V	TGCA	2 cut(s)	113, 313
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	70, 360, 367, 602
KspI	CCGCGG	1 cut(s)	581
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	12, 269
LpnPI	CCDG	8 cut(s)	88, 92, 141, 260, 497, 592, 606, 643
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	9 cut(s)	24, 144, 227, 235, 304, 344, 398, 463, 719
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	8 cut(s)	56, 137, 166, 177, 189, 386, 395, 693
MlyI	GAGTC	2 cut(s)	254, 452
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	9 cut(s)	56, 140, 189, 213, 250, 277, 334, 447, 677
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	4 cut(s)	141, 171, 428, 720
MslI	CAYNNNNRTG	2 cut(s)	191, 357
MspA1I	CMGCKG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	177
MvnI	CGCG	2 cut(s)	282, 580
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	4 cut(s)	70, 360, 367, 602
NlaIV	GGNNCC	2 cut(s)	200, 435
NmuCI	GTSAC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	610, 615
PleI	GAGTC	2 cut(s)	254, 452
PpsI	GAGTC	2 cut(s)	254, 452
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	200, 435
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	191, 357
SacII	CCGCGG	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	141, 171, 428, 720
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	2 cut(s)	254, 452
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	9 cut(s)	120, 151, 200, 249, 274, 471, 482, 574, 651
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	581
SgrBI	CCGCGG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	191, 357
Sse9I	AATT	8 cut(s)	56, 137, 166, 177, 189, 386, 395, 693
SsiI	CCGC	3 cut(s)	280, 578, 580
SspMI	CTAG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	490, 731
TaqI	TCGA	3 cut(s)	449, 613, 681
TasI	AATT	8 cut(s)	56, 137, 166, 177, 189, 386, 395, 693
TfiI	GAWTC	2 cut(s)	610, 615
Tru1I	TTAA	4 cut(s)	141, 171, 428, 720
Tru9I	TTAA	4 cut(s)	141, 171, 428, 720
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	8 cut(s)	17, 341, 345, 388, 408, 582, 667, 720
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	137, 395
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.