Rh4AG194300

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008345
Physical Location & Seq
Reverse (-)
47711676 .. 47718564
6889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG194300.1

Sequence Viewer

Length: 678 bp
ATGATTTGTTGTCGTGGTTCGGCAAACAAGTATAGCAGGCTGGATGCAAAGCTTGAAAAGAGAATGGCTGAATTTAAAAGAGGTTCTTCAGGCCAAAGCAATTTTAAGTCAATTGACAGCATAATTATGAGGTTCCCTCAGTTTAGGGAAGAACTGAAGAACATAAGAAATGTGTTTGACCTGTATGATGAGGACTCAAATGGAGCTATAGACCGCGAGGAACTGAAGAAATGCTTACAGAAACTGCAACTCCATCTGACAGCAGAAGAGATTGAGGATCTTTTTCATTCATGTGACATGGATGGGAGTGAAGGGATACAATTCAATGAATTCATTGTTCTTCTATGTCTCATCTATCTATTAAAGGACCCTCAAACGACATCGAAGATAGACTCTCCACAGCTAGAAGCAACTTTTGATACTGTCATTGAAGTATTTTTGTTTCTGGATAAAAATGGTGATGGAAAACTGAACAAGACAGAAGTGGTGAAGGCACTGAATGAAGCTTCTCCGCGGGAGAAATCTCCTGCTCATGTCAGCAGGAATCGATTCAAGGAAATGGATTGGGACAAAAGTGGGAAGGTGAGTTTCAGGCAGTTCCTCTTTGCTTTCATCGATTGGGTTGGAATTGAAACAGATGAAGAAATATCTGTTAAGGCTAACTGTATAGAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

225

Amino Acids

25.98

Weight (kDa)

5.19

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 54 - 112 1.4e-11 EF-hand domain pair
EF-hand_1 PF00036 55 - 82 6.4e-06 EF hand domain
EF-hand_6 PF13405 55 - 82 5.7e-07 EF-hand domain
EF-hand_8 PF13833 66 - 115 5.5e-09 EF-hand domain pair
EF-hand_7 PF13499 142 - 203 4.6e-07 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 216, 514
AciI CCGC 3 cut(s) 214, 512, 514
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 71, 329
AcuI CTGAAG 3 cut(s) 72, 176, 245
AgsI TTSAA 5 cut(s) 56, 325, 431, 553, 632
AluBI AGCT 4 cut(s) 52, 206, 403, 506
AluI AGCT 4 cut(s) 52, 206, 403, 506
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 71, 329
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 470, 499, 595
AvaII GGWCC 1 cut(s) 367
BccI CCATC 3 cut(s) 261, 296, 455
BciVI GTATCC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 207
BfuI GTATCC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 134, 369
BmsI GCATC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 121, 153
Bsa29I ATCGAT 2 cut(s) 547, 615
BsaJI CCNNGG 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
BseCI ATCGAT 2 cut(s) 547, 615
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 49, 307
BseMII CTCAG 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 216, 514
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 2 cut(s) 547, 615
BslFI GGGAC 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 3 cut(s) 214, 512, 514
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 2 cut(s) 547, 615
BspFNI CGCG 2 cut(s) 216, 514
BspLI GGNNCC 2 cut(s) 134, 369
BspPI GGATC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 424, 665
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 49, 307
BstFNI CGCG 2 cut(s) 216, 514
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 2 cut(s) 216, 514
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 2 cut(s) 547, 615
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 2 cut(s) 547, 615
BtgI CCRYGG 1 cut(s) 512
BtsCI GGATG 2 cut(s) 49, 307
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 367
Cfr42I CCGCGG 1 cut(s) 515
ClaI ATCGAT 2 cut(s) 547, 615
CviAII CATG 3 cut(s) 291, 298, 533
CviJI RGCY 8 cut(s) 40, 52, 68, 93, 206, 403, 506, 659
CviKI_1 RGCY 8 cut(s) 40, 52, 68, 93, 206, 403, 506, 659
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 3 cut(s) 72, 176, 245
EcoO109I RGGNCCY 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 329
FaeI CATG 3 cut(s) 294, 301, 536
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 218, 250
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 290, 297, 532
FauI CCCGC 1 cut(s) 507
FokI GGATG 2 cut(s) 56, 314
FspBI CTAG 1 cut(s) 404
HaeIII GGCC 1 cut(s) 93
Hin1II CATG 3 cut(s) 294, 301, 536
HindIII AAGCTT 2 cut(s) 50, 504
HinfI GANTC 4 cut(s) 194, 392, 544, 549
HphI GGTGA 3 cut(s) 470, 499, 595
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 305, 484, 574
HpyCH4III ACNGT 2 cut(s) 424, 665
HpyCH4V TGCA 2 cut(s) 47, 247
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 3 cut(s) 294, 301, 536
KspI CCGCGG 1 cut(s) 515
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 22, 26, 75, 194, 431, 526, 540, 577
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 8 cut(s) 78, 161, 169, 238, 278, 332, 397, 653
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 277
MluCI AATT 7 cut(s) 71, 100, 111, 123, 320, 329, 627
MlyI GAGTC 2 cut(s) 188, 386
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 8 cut(s) 74, 123, 147, 184, 211, 268, 381, 611
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 4 cut(s) 75, 105, 362, 654
MslI CAYNNNNRTG 2 cut(s) 125, 291
MspA1I CMGCKG 1 cut(s) 514
MunI CAATTG 1 cut(s) 111
MvnI CGCG 2 cut(s) 216, 514
NdeII GATC 1 cut(s) 277
NlaIII CATG 3 cut(s) 294, 301, 536
NlaIV GGNNCC 2 cut(s) 134, 369
NmuCI GTSAC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 544, 549
PleI GAGTC 2 cut(s) 188, 386
PpsI GAGTC 2 cut(s) 188, 386
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 134, 369
PspPI GGNCC 1 cut(s) 367
PspPPI RGGWCCY 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 125, 291
SacII CCGCGG 1 cut(s) 515
SaqAI TTAA 4 cut(s) 75, 105, 362, 654
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 367
SchI GAGTC 2 cut(s) 188, 386
SetI ASST 8 cut(s) 54, 85, 134, 183, 208, 405, 508, 585
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 207
Sfr303I CCGCGG 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 515
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 125, 291
Sse9I AATT 7 cut(s) 71, 100, 111, 123, 320, 329, 627
SsiI CCGC 3 cut(s) 214, 512, 514
SspMI CTAG 1 cut(s) 404
TaaI ACNGT 2 cut(s) 424, 665
TaqI TCGA 3 cut(s) 383, 547, 615
TasI AATT 7 cut(s) 71, 100, 111, 123, 320, 329, 627
TfiI GAWTC 2 cut(s) 544, 549
Tru1I TTAA 4 cut(s) 75, 105, 362, 654
Tru9I TTAA 4 cut(s) 75, 105, 362, 654
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 7 cut(s) 275, 279, 322, 342, 516, 601, 654
TspRI CASTG 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 2 cut(s) 71, 329
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.