Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008345

Physical Location & Seq

Genomic Coordinates Forward (+)

21472530 .. 21474914

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGTACGAGAAACCCACAGTTTGCGTTCTTGATGCTTCAACCTACGTTGGCTTTTGGATTCTCAAAGGATTACTTGCTCAAGGCTTCAGAGTTCACGCAGGTACCCAGAAGAATGAGGAAACAGAGATTCAGAAGAAAATTAGGGAAATGGAGAAGGAAGAAGAGAGATTAGTAGTTTTCTCTGTTGATGTTTTTGATTATCATAGCATTCTTTTGGCTTTGAAAGGTTGCTCTGCTGTGTTCTGTTGTCTAGACAGTCCAGAAGCATATGATGAAAAAATGGTGAATTTAGAGGTGAGAGGAGCAATCAATGTTGTTGAAGCATGTGCTCAGACAGACAGCGTGGAGAAGATTTTGTTCTCTTCTTCATTGGCTGCAGCAATATGGAAGGAGGACATTTCTTCAGAGAAGGATGTGGATGAAAAGTCATGGAGTGATCCAGAATTTTGCAGGAAATTGAAGTTGTGGTATGCCTTGGCAAAGACACAATCGGAACAGGCTGCTTGGGCTCTGTCAATGGACCGGACTCTTAAGATGATCTCTATAAATTCTGGACTAGTCCTTGGACCTAGTGTTGCACAACAAAATCTGCGAACAACTATGTCATATCTTAACGGAGCAGCTCAAATGTATGAAAATGGTGTACTAGCATTTGTCGATGTGGACTTTCTTGTGAATGTTCATATCCGAGCTCTGGAGGACCAATCTGCTTGCGGGAGATATTTCTGCTTCAGTCACATAGTGAATACTGAGGACGAAGCTGTTAAGCTTGCACAGAGCTTGAGTCCTTTAATATCTTTACCACCAAGGTATCATTACGAAGGGAGTGAGGCACATATCGAGCGATTGACGACTAAGAAGTTGAGCAAGCTGGTTGAGGGAGCTGCCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

298

Amino Acids

33.45

Weight (kDa)

5.22

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	12 - 169	4.8e-07	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	13 - 211	1.3e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	17 - 128	3.8e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24110 AT3G24110
fragaria_vesca	FvH4_4g15760
malus_domestica	MD04G1008500.v1.1
prunus_persica	Prupe.1G007100_v2.0.a1 Prupe.1G007100_v2.0.a1 Prupe.1G007100_v2.0.a1
pyrus_communis	pycom04g00630
rosa_chinensis	RchiOBHm_Chr4g0415381
rosa_laevigata	RLG00000008075
rosa_multiflora	Rmu_sc0013726.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359140
rosa_rugosa	Rorug04G0133500 Rorug04G0133500 Rorug04G0133500 Rorug04G0133600 Rorug04G0133700 Rorug04G0133700
rosa_samantha	Rh4AG194300 Rh4BG192700 Rh4CG205200 Rh4DG192000
rosa_wichuraiana	Rw4G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	1 cut(s)	717
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	3 cut(s)	289, 446, 550
AcuI	CTGAAG	3 cut(s)	73, 390, 718
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	3 cut(s)	8, 106, 648
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	42, 226, 323, 463
AhlI	ACTAGT	1 cut(s)	559
AluBI	AGCT	7 cut(s)	626, 695, 764, 772, 783, 874, 887
AluI	AGCT	7 cut(s)	626, 695, 764, 772, 783, 874, 887
Alw21I	GWGCWC	2 cut(s)	334, 697
AlwI	GGATC	1 cut(s)	434
ApeKI	GCWGC	5 cut(s)	377, 380, 503, 623, 887
ApoI	RAATTY	3 cut(s)	289, 446, 550
Asp718I	GGTACC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	523, 569, 703
AsuHPI	GGTGA	2 cut(s)	298, 310
AvaII	GGWCC	3 cut(s)	523, 569, 703
BaeI	ACNNNNGTAYC	4 cut(s)	88, 121, 797, 830
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	514, 697
Bbv12I	GWGCWC	2 cut(s)	334, 697
BbvI	GCAGC	5 cut(s)	364, 392, 490, 635, 874
BcuI	ACTAGT	1 cut(s)	559
BfaI	CTAG	4 cut(s)	254, 560, 573, 650
BfmI	CTRYAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	378, 381, 504, 624, 888
BlsI	GCNGC	5 cut(s)	379, 382, 505, 625, 889
Bme18I	GGWCC	3 cut(s)	523, 569, 703
BmgT120I	GGNCC	3 cut(s)	523, 569, 703
BmiI	GGNNCC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	719
BpuEI	CTTGAG	2 cut(s)	66, 805
BsaJI	CCNNGG	3 cut(s)	477, 565, 809
BsaWI	WCCGGW	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
BseDI	CCNNGG	3 cut(s)	477, 565, 809
BseGI	GGATG	2 cut(s)	421, 427
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	347, 744
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	5 cut(s)	364, 392, 490, 635, 874
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	334, 697
BsiSI	CCGG	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	334, 514, 697
Bsp143I	GATC	2 cut(s)	439, 540
BspACI	CCGC	1 cut(s)	717
BspCNI	CTCAG	2 cut(s)	346, 745
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	477, 565, 809
BssMI	GATC	2 cut(s)	439, 540
BssT1I	CCWWGG	3 cut(s)	477, 565, 809
Bst4CI	ACNGT	2 cut(s)	22, 260
Bst6I	CTCTTC	2 cut(s)	159, 370
BstAFI	CTTAAG	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	715, 774, 872
BstDEI	CTNAG	3 cut(s)	333, 753, 858
BstF5I	GGATG	2 cut(s)	421, 427
BstKTI	GATC	2 cut(s)	442, 543
BstMBI	GATC	2 cut(s)	439, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	364, 392, 490, 635, 874
BtsCI	GGATG	2 cut(s)	421, 427
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	715, 774, 872
Cfr13I	GGNCC	3 cut(s)	523, 569, 703
Csp6I	GTAC	3 cut(s)	7, 105, 647
CviAII	CATG	2 cut(s)	327, 432
CviQI	GTAC	3 cut(s)	7, 105, 647
DdeI	CTNAG	3 cut(s)	333, 753, 858
DpnI	GATC	2 cut(s)	441, 542
DpnII	GATC	2 cut(s)	439, 540
DraIII	CACNNNGTG	1 cut(s)	745
Eam1104I	CTCTTC	2 cut(s)	159, 370
EarI	CTCTTC	2 cut(s)	159, 370
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	3 cut(s)	477, 565, 809
Eco24I	GRGCYC	2 cut(s)	514, 697
Eco47I	GGWCC	3 cut(s)	523, 569, 703
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	3 cut(s)	73, 390, 718
EcoICRI	GAGCTC	1 cut(s)	695
EcoT14I	CCWWGG	3 cut(s)	477, 565, 809
EcoT38I	GRGCYC	2 cut(s)	514, 697
ErhI	CCWWGG	3 cut(s)	477, 565, 809
FaeI	CATG	2 cut(s)	330, 435
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	2 cut(s)	326, 431
FauI	CCCGC	1 cut(s)	710
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	378, 381, 504, 624, 888
FokI	GGATG	2 cut(s)	428, 434
FriOI	GRGCYC	2 cut(s)	514, 697
Fsp4HI	GCNGC	5 cut(s)	378, 381, 504, 624, 888
FspBI	CTAG	4 cut(s)	254, 560, 573, 650
GluI	GCNGC	5 cut(s)	378, 381, 504, 624, 888
GsuI	CTGGAG	1 cut(s)	719
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	2 cut(s)	330, 435
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	4 cut(s)	61, 130, 529, 787
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	2 cut(s)	298, 310
Hpy166II	GTNNAC	3 cut(s)	97, 647, 667
Hpy188I	TCNGA	6 cut(s)	92, 135, 336, 409, 496, 692
Hpy188III	TCNNGA	6 cut(s)	32, 254, 263, 443, 555, 698
Hpy8I	GTNNAC	3 cut(s)	97, 647, 667
HpyAV	CCTTC	4 cut(s)	151, 385, 406, 818
HpyCH4III	ACNGT	2 cut(s)	22, 260
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	380, 453, 581, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	3 cut(s)	333, 753, 858
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	330, 435
KpnI	GGTACC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	439, 540
LmnI	GCTCC	3 cut(s)	305, 620, 884
Lsp1109I	GCAGC	5 cut(s)	364, 392, 490, 635, 874
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	4 cut(s)	254, 560, 573, 650
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	2 cut(s)	441, 542
MboI	GATC	2 cut(s)	439, 540
MboII	GAAGA	8 cut(s)	124, 148, 173, 176, 357, 360, 364, 396
MhlI	GDGCHC	3 cut(s)	334, 514, 697
MluCI	AATT	5 cut(s)	141, 289, 446, 458, 550
MlyI	GAGTC	2 cut(s)	523, 796
MnlI	CCTC	8 cut(s)	112, 289, 296, 388, 694, 748, 826, 874
MseI	TTAA	4 cut(s)	534, 615, 768, 794
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	526
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	2 cut(s)	439, 540
NlaIII	CATG	2 cut(s)	330, 435
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	737
NspI	RCATGY	1 cut(s)	330
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	61, 130
PkrI	GCNGC	5 cut(s)	379, 382, 505, 625, 889
PleI	GAGTC	2 cut(s)	523, 795
PpsI	GAGTC	2 cut(s)	523, 795
Psp124BI	GAGCTC	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	3 cut(s)	523, 569, 703
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	8, 106, 648
RsaNI	GTAC	3 cut(s)	7, 105, 647
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	4 cut(s)	534, 615, 768, 794
SatI	GCNGC	5 cut(s)	378, 381, 504, 624, 888
Sau3AI	GATC	2 cut(s)	439, 540
Sau96I	GGNCC	3 cut(s)	523, 569, 703
SchI	GAGTC	2 cut(s)	523, 796
SduI	GDGCHC	3 cut(s)	334, 514, 697
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	3 cut(s)	523, 569, 703
SmlI	CTYRAG	3 cut(s)	81, 533, 784
SmoI	CTYRAG	3 cut(s)	81, 533, 784
SpeI	ACTAGT	1 cut(s)	559
Sse9I	AATT	5 cut(s)	141, 289, 446, 458, 550
SsiI	CCGC	1 cut(s)	717
SspMI	CTAG	4 cut(s)	254, 560, 573, 650
SstI	GAGCTC	1 cut(s)	697
StyI	CCWWGG	3 cut(s)	477, 565, 809
TaaI	ACNGT	2 cut(s)	22, 260
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	660, 843
TasI	AATT	5 cut(s)	141, 289, 446, 458, 550
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	61, 130
Tru1I	TTAA	4 cut(s)	534, 615, 768, 794
Tru9I	TTAA	4 cut(s)	534, 615, 768, 794
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	5 cut(s)	377, 380, 503, 623, 887
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	6 cut(s)	17, 291, 360, 438, 651, 674
TspGWI	ACGGA	1 cut(s)	633
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	3 cut(s)	523, 569, 703
XapI	RAATTY	3 cut(s)	289, 446, 550
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	330
XspI	CTAG	4 cut(s)	254, 560, 573, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.