Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019602.1

Orthogroup ID

OG0004075

Physical Location & Seq

Genomic Coordinates Forward (+)

6872 .. 8056

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019602.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcatctcaggcccttttttagtcctcgcaaatcaataatattgtcagattttggtcaagttcctctttccagtgaatttgatattgctgcattcgttgtgtttgtgggggaggtttatgtcgctggtcaccagaagaaacaatgggtgtttgtgacagatggctccatttctgaatcaaagtcagaagaattaaacgattctctacttgccatctgcttctgttcaccgcatatcgatgatcaatcagatgttcctataaactacaacctcgcaggttcaacggtcggcttttgtaatcttatcaagagagcaaaggaccaaatgaatgctctttgggtagctgatgctacagaaaactcagcatactttttgagttttgactctccacattgttcacatctcaaaggtgctgctgcctctgctgaaagatggggaagaatctctagcttgaccatcagtaggcttaaggagagggttctgtttatcattggtaaagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000228 GO:0000278 GO:0000280 GO:0000281 GO:0000722 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000793 GO:0000794 GO:0000795 GO:0000800 GO:0000910 GO:0001556 GO:0001701 GO:0001824 GO:0001832 GO:0001833 GO:0002020 GO:0002376 GO:0002520 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006289 GO:0006302 GO:0006310 GO:0006312 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006978 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007059 GO:0007098 GO:0007127 GO:0007140 GO:0007141 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007292 GO:0007346 GO:0007399 GO:0007417 GO:0007420 GO:0007548 GO:0007568 GO:0007569 GO:0008022 GO:0008080 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008156 GO:0008219 GO:0008283 GO:0008285 GO:0008406 GO:0008585 GO:0008608 GO:0008630 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009790 GO:0009792 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0009994 GO:0010165 GO:0010212 GO:0010225 GO:0010332 GO:0010468 GO:0010484 GO:0010485 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0012501 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019953 GO:0021700 GO:0022402 GO:0022412 GO:0022414 GO:0023052 GO:0030097 GO:0030141 GO:0030154 GO:0030330 GO:0030879 GO:0031023 GO:0031297 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031410 GO:0031619 GO:0031974 GO:0031981 GO:0031982 GO:0032200 GO:0032465 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033260 GO:0033365 GO:0033554 GO:0033593 GO:0033599 GO:0033600 GO:0034212 GO:0034502 GO:0034613 GO:0034641 GO:0034645 GO:0035264 GO:0035556 GO:0036211 GO:0040007 GO:0042127 GO:0042592 GO:0042770 GO:0042771 GO:0042772 GO:0042802 GO:0043009 GO:0043015 GO:0043060 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0044786 GO:0045005 GO:0045132 GO:0045137 GO:0045143 GO:0045184 GO:0045787 GO:0045893 GO:0045931 GO:0045934 GO:0045935 GO:0046483 GO:0046545 GO:0046660 GO:0048232 GO:0048285 GO:0048468 GO:0048469 GO:0048477 GO:0048478 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048589 GO:0048599 GO:0048608 GO:0048609 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050000 GO:0050678 GO:0050680 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051276 GO:0051298 GO:0051301 GO:0051302 GO:0051303 GO:0051310 GO:0051311 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0060322 GO:0061458 GO:0061640 GO:0061733 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070198 GO:0070199 GO:0070200 GO:0070727 GO:0071695 GO:0071704 GO:0071840 GO:0072331 GO:0072332 GO:0072594 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0097190 GO:0097193 GO:0097708 GO:0098687 GO:0098813 GO:0099086 GO:0099503 GO:0140013 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1902298 GO:1902680 GO:1902969 GO:1903046 GO:1903047 GO:1903506 GO:1903508 GO:1990426 GO:1990505 GO:2000026 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 ko05200 ko05212 ko05224 map03440 map03460 map05200 map05212 map05224

Pfam Domains

Protein Families

BRCA-2_OB1 BRCA-2_helical BRCA2

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

6.18

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00020 AT4G00020 AT4G00020 AT4G00020 AT4G00020 AT5G01630
fragaria_vesca	FvH4_1g25820 FvH4_1g25820 FvH4_1g25820 FvH4_1g25820 FvH4_1g25820 FvH4_1g25820
malus_domestica	MD01G1008700.v1.1
prunus_persica	Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1 Prupe.4G287200_v2.0.a1
pyrus_communis	pycom520g01190
rosa_chinensis	RchiOBHm_Chr3g0484931
rosa_laevigata	RLG00000023185
rosa_multiflora	Rmu_sc0005946.1_g000002 Rmu_sc0019602.1_g000003
rosa_roxburghii	Rroxscaffold_6G00397350
rosa_rugosa	Rorug03G0214300
rosa_samantha	Rh3AG264700 Rh3BG300300 Rh3CG298100 Rh3DG294000
rosa_wichuraiana	Rw3G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	282
AluBI	AGCT	2 cut(s)	344, 450
AluI	AGCT	2 cut(s)	344, 450
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	89, 413, 416
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	12, 319
AsuHPI	GGTGA	2 cut(s)	122, 219
AvaII	GGWCC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	76, 400, 403
BccI	CCATC	4 cut(s)	155, 221, 426, 464
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	90, 414, 417
BlsI	GCNGC	3 cut(s)	91, 415, 418
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	12, 319
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	13, 337
Bsa29I	ATCGAT	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	22, 375
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	76, 400, 403
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmI	GAATGC	2 cut(s)	92, 334
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	21, 374
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	286
BstAFI	CTTAAG	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	8, 361
BstEII	GGTNACC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 422
BstPI	GGTNACC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	76, 400, 403
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	12, 319
ClaI	ATCGAT	1 cut(s)	237
CviJI	RGCY	6 cut(s)	13, 165, 291, 344, 450, 466
CviKI_1	RGCY	6 cut(s)	13, 165, 291, 344, 450, 466
DdeI	CTNAG	2 cut(s)	8, 361
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	4 cut(s)	120, 234, 260, 367
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	90, 414, 417
Fsp4HI	GCNGC	3 cut(s)	90, 414, 417
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	3 cut(s)	90, 414, 417
HaeIII	GGCC	1 cut(s)	13
HinfI	GANTC	4 cut(s)	176, 200, 383, 441
HphI	GGTGA	2 cut(s)	122, 219
Hpy166II	GTNNAC	2 cut(s)	227, 398
Hpy188I	TCNGA	4 cut(s)	49, 175, 187, 250
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	2 cut(s)	227, 398
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	4, 92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 422
HpyF3I	CTNAG	2 cut(s)	8, 361
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	4 cut(s)	85, 111, 146, 261
Lsp1109I	GCAGC	3 cut(s)	76, 400, 403
LweI	GCATC	2 cut(s)	13, 337
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	128, 154
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	148, 200, 450
MluCI	AATT	2 cut(s)	77, 191
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	36, 75, 106, 281, 430, 468
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	194, 468
MslI	CAYNNNNRTG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	467
Mva1269I	GAATGC	2 cut(s)	92, 334
MwoI	GCNNNNNNNGC	2 cut(s)	10, 422
NdeII	GATC	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	128, 154
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	2 cut(s)	92, 334
PfeI	GAWTC	3 cut(s)	176, 200, 441
PkrI	GCNGC	3 cut(s)	91, 415, 418
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	12, 319
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	194, 468
SatI	GCNGC	3 cut(s)	90, 414, 417
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	12, 319
SchI	GAGTC	1 cut(s)	377
SetI	ASST	6 cut(s)	117, 273, 280, 346, 412, 452
SfaNI	GCATC	2 cut(s)	13, 337
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	2 cut(s)	77, 191
SsiI	CCGC	1 cut(s)	230
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	77, 191
TfiI	GAWTC	3 cut(s)	176, 200, 441
Tru1I	TTAA	2 cut(s)	194, 468
Tru9I	TTAA	2 cut(s)	194, 468
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	2 cut(s)	128, 154
TseI	GCWGC	3 cut(s)	89, 413, 416
Tsp45I	GTSAC	2 cut(s)	128, 154
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	79
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	77
XspI	CTAG	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.