Rmu_sc0020783.1_g000001

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020783.1
OG0014823
Physical Location & Seq
Forward (+)
509 .. 2678
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020783.1_g000001.1.cds

Sequence Viewer

Length: 1005 bp
atggatttgtcaaccctccaaatccaatcgaagagagctccaccaccagcaccagtctctcgcaacaatcgccaatgcctcctcatctcctgcctctctctcctcgccctccccttcctcttctacctcgtctccaccgccctcaagctccacctctcccccaaattcacccactccgaatccaccctcttcggcattgtcatcaccgccgcccccaccgcctcccgcatccgcgtcttccatttcctcgacgccacagctccctccacctcctcccgctctcgccccgccctctcctccttcgccgcccgccccgacgccgccggagcctccctcgcgccgctgctccgcttcgccaagtcgcaggtgccgatgaaagagcgagccagtacgaagctgctcttgtttgcttccccggagctccaggacttgggccaggagatcgccgagaagcttctcgagtcgtgtaggaaggtgctcagatcttccgggttctggttcaaggacgattgggccagagtggtctcaggtgaagagcaaggggtttatgcttgggtgagtgccaattacgctctcggaacattgaagagtgaggctgaagaaaccactgggatagttgaactcggtggggcttctttgcaggttacatttgcccaaaaagaaacactccaagtgcaatcttctccgtctcgagttatcaaattgtttggagttacttatcacctttatagccacggcttgccgcaatttggccaggatgcggcttgggaatcattgtatgaaaactacagaaaatcgacgcctttttcagattctagaaaggggagtcttgttcacccttgtgtacctagaggatataagctgacagtgaatgccagtgatgaacaacttctagtgtcttcgctgggcggaaacttttctgaatgcaagtctcaagttttggcactattaaagagcaaacaaggtaacataatcttctgcttcttcattttcaccagtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

334

Amino Acids

36.65

Weight (kDa)

9.27

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014823)

Species Orthologous Gene IDs
malus_domestica MD11G1180600.v1.1
prunus_persica Prupe.6G153100_v2.0.a1
pyrus_communis pycom11g15580
rosa_chinensis RchiOBHm_Chr5g0049751
rosa_laevigata RLG00000034644
rosa_multiflora Rmu_sc0016686.1_g000002 Rmu_sc0020783.1_g000001
rosa_roxburghii Rroxscaffold_1G00031680
rosa_rugosa Rorug05G0250800 Rorug05G0250800 Rorug05G0250900
rosa_samantha Rh5AG326900 Rh5BG338000 Rh5CG362600 Rh5DG350200
rosa_wichuraiana Rw0G018430 Rw5G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 2 cut(s) 355, 631
AccB1I GGYRCC 1 cut(s) 367
AccB7I CCANNNNNTGG 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 279
AccII CGCG 2 cut(s) 234, 338
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 618
AcyI GRCGYC 3 cut(s) 252, 318, 800
AfaI GTAC 2 cut(s) 391, 846
AfiI CCNNNNNNNGG 4 cut(s) 430, 495, 749, 760
AgsI TTSAA 3 cut(s) 502, 586, 620
AjnI CCWGG 3 cut(s) 423, 435, 753
AleI CACNNNNGTG 1 cut(s) 840
AluBI AGCT 7 cut(s) 38, 148, 260, 397, 421, 454, 862
AluI AGCT 7 cut(s) 38, 148, 260, 397, 421, 454, 862
Alw21I GWGCWC 3 cut(s) 40, 423, 480
Alw26I GTCTC 5 cut(s) 61, 136, 529, 693, 936
AlwNI CAGNNNCTG 1 cut(s) 1002
Ama87I CYCGRG 2 cut(s) 458, 690
AoxI GGCC 3 cut(s) 433, 513, 751
ApeKI GCWGC 2 cut(s) 343, 397
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 2 cut(s) 888, 916
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 433, 513
AsuC2I CCSGG 2 cut(s) 416, 490
AsuHPI GGTGA 7 cut(s) 160, 196, 542, 568, 713, 827, 985
AvaI CYCGRG 2 cut(s) 458, 690
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 40, 423
BbsI GAAGAC 2 cut(s) 229, 891
Bbv12I GWGCWC 3 cut(s) 40, 423, 480
BbvI GCAGC 2 cut(s) 330, 384
BceAI ACGGC 1 cut(s) 751
BciT130I CCWGG 3 cut(s) 425, 437, 755
BcnI CCSGG 2 cut(s) 416, 490
BcoDI GTCTC 5 cut(s) 61, 136, 529, 693, 936
BfaI CTAG 3 cut(s) 816, 849, 893
BfmI CTRYAG 1 cut(s) 787
BfuAI ACCTGC 2 cut(s) 355, 631
BglII AGATCT 1 cut(s) 482
BisI GCNGC 8 cut(s) 210, 306, 321, 341, 344, 398, 743, 762
BlsI GCNGC 8 cut(s) 211, 307, 322, 342, 345, 399, 744, 763
Bme1390I CCNGG 5 cut(s) 416, 425, 437, 490, 755
BmeT110I CYCGRG 2 cut(s) 458, 690
BmgT120I GGNCC 2 cut(s) 433, 513
BmiI GGNNCC 2 cut(s) 328, 369
BmrFI CCNGG 5 cut(s) 416, 425, 437, 490, 755
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 237, 748
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 2 cut(s) 229, 891
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 128, 918
BpuMI CCSGG 2 cut(s) 416, 490
BsaHI GRCGYC 3 cut(s) 252, 318, 800
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 414, 733
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 495, 749, 760
Bse1I ACTGG 5 cut(s) 53, 387, 613, 876, 996
BseBI CCWGG 3 cut(s) 425, 437, 755
BseDI CCNNGG 2 cut(s) 414, 733
BseGI GGATG 2 cut(s) 228, 763
BseLI CCNNNNNNNGG 4 cut(s) 430, 495, 749, 760
BseMII CTCAG 2 cut(s) 493, 540
BseNI ACTGG 5 cut(s) 53, 387, 613, 876, 996
BseRI GAGGAG 4 cut(s) 71, 92, 262, 286
BseXI GCAGC 2 cut(s) 330, 384
BseYI CCCAGC 1 cut(s) 904
Bsh1236I CGCG 2 cut(s) 234, 338
BshFI GGCC 3 cut(s) 435, 515, 753
BshNI GGYRCC 1 cut(s) 367
BsiHKAI GWGCWC 3 cut(s) 40, 423, 480
BsiHKCI CYCGRG 2 cut(s) 458, 690
BsiSI CCGG 3 cut(s) 324, 416, 489
BslI CCNNNNNNNGG 4 cut(s) 430, 495, 749, 760
BsmAI GTCTC 5 cut(s) 61, 136, 529, 693, 936
BsmBI CGTCTC 2 cut(s) 136, 693
BsmI GAATGC 2 cut(s) 877, 929
BsnI GGCC 3 cut(s) 435, 515, 753
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 2 cut(s) 458, 690
Bsp1286I GDGCHC 3 cut(s) 40, 423, 480
Bsp143I GATC 2 cut(s) 441, 482
BspANI GGCC 3 cut(s) 435, 515, 753
BspCNI CTCAG 2 cut(s) 492, 539
BspFNI CGCG 2 cut(s) 234, 338
BspLI GGNNCC 2 cut(s) 328, 369
BspMI ACCTGC 2 cut(s) 355, 631
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 367
BspTNI GGTCTC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 279
BsrI ACTGG 5 cut(s) 53, 387, 613, 876, 996
BssECI CCNNGG 2 cut(s) 414, 733
BssMI GATC 2 cut(s) 441, 482
BssNI GRCGYC 3 cut(s) 252, 318, 800
Bst2UI CCWGG 3 cut(s) 425, 437, 755
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 5 cut(s) 26, 125, 194, 528, 581
BstACI GRCGYC 3 cut(s) 252, 318, 800
BstC8I GCNNGC 3 cut(s) 310, 384, 740
BstDEI CTNAG 2 cut(s) 479, 526
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 2 cut(s) 228, 763
BstFNI CGCG 2 cut(s) 234, 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 444, 485
BstMAI GTCTC 5 cut(s) 61, 136, 529, 693, 936
BstMBI GATC 2 cut(s) 441, 482
BstMWI GCNNNNNNNGC 5 cut(s) 69, 218, 326, 335, 569
BstNI CCWGG 3 cut(s) 425, 437, 755
BstSCI CCNGG 5 cut(s) 414, 423, 435, 488, 753
BstSFI CTRYAG 1 cut(s) 787
BstUI CGCG 2 cut(s) 234, 338
BstV1I GCAGC 2 cut(s) 330, 384
BstV2I GAAGAC 2 cut(s) 229, 891
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
BsuRI GGCC 3 cut(s) 435, 515, 753
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 2 cut(s) 228, 763
BtsIMutI CAGTG 3 cut(s) 606, 873, 883
BveI ACCTGC 2 cut(s) 355, 631
Cac8I GCNNGC 3 cut(s) 310, 384, 740
CaiI CAGNNNCTG 1 cut(s) 1002
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 433, 513
CseI GACGC 4 cut(s) 223, 260, 326, 808
Csp6I GTAC 2 cut(s) 390, 845
CviQI GTAC 2 cut(s) 390, 845
DdeI CTNAG 2 cut(s) 479, 526
DpnI GATC 2 cut(s) 443, 484
DpnII GATC 2 cut(s) 441, 482
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 5 cut(s) 26, 125, 194, 528, 581
EarI CTCTTC 5 cut(s) 26, 125, 194, 528, 581
EciI GGCGGA 1 cut(s) 924
Ecl136II GAGCTC 2 cut(s) 38, 421
Eco24I GRGCYC 2 cut(s) 40, 423
Eco31I GGTCTC 1 cut(s) 529
Eco53kI GAGCTC 2 cut(s) 38, 421
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 2 cut(s) 458, 690
EcoICRI GAGCTC 2 cut(s) 38, 421
EcoRII CCWGG 3 cut(s) 423, 435, 753
EcoT38I GRGCYC 2 cut(s) 40, 423
Esp3I CGTCTC 2 cut(s) 136, 693
FaiI YATR 5 cut(s) 549, 729, 780, 858, 971
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FauI CCCGC 4 cut(s) 233, 284, 295, 317
Fnu4HI GCNGC 8 cut(s) 210, 306, 321, 341, 344, 398, 743, 762
FokI GGATG 2 cut(s) 215, 770
FriOI GRGCYC 2 cut(s) 40, 423
Fsp4HI GCNGC 8 cut(s) 210, 306, 321, 341, 344, 398, 743, 762
FspBI CTAG 3 cut(s) 816, 849, 893
GlaI GCGC 1 cut(s) 339
GluI GCNGC 8 cut(s) 210, 306, 321, 341, 344, 398, 743, 762
GsaI CCCAGC 1 cut(s) 908
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 3 cut(s) 435, 515, 753
HapII CCGG 3 cut(s) 324, 416, 489
HgaI GACGC 4 cut(s) 223, 260, 326, 808
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 3 cut(s) 252, 318, 800
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 5 cut(s) 179, 461, 770, 812, 826
HpaII CCGG 3 cut(s) 324, 416, 489
HphI GGTGA 7 cut(s) 160, 196, 542, 568, 713, 827, 985
Hpy166II GTNNAC 3 cut(s) 12, 835, 845
Hpy188I TCNGA 6 cut(s) 178, 482, 578, 811, 922, 1004
Hpy188III TCNNGA 3 cut(s) 458, 690, 816
Hpy8I GTNNAC 3 cut(s) 12, 835, 845
Hpy99I CGWCG 3 cut(s) 254, 320, 802
HpyAV CCTTC 3 cut(s) 124, 310, 466
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4V TGCA 3 cut(s) 640, 676, 927
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 218, 326, 335, 569
HpyF3I CTNAG 2 cut(s) 479, 526
Hsp92I GRCGYC 3 cut(s) 252, 318, 800
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 441, 482
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 7 cut(s) 43, 153, 265, 326, 351, 418, 426
Lsp1109I GCAGC 2 cut(s) 330, 384
LweI GCATC 2 cut(s) 237, 748
MaeI CTAG 3 cut(s) 816, 849, 893
MaeIII GTNAC 3 cut(s) 643, 712, 965
MalI GATC 2 cut(s) 443, 484
MbiI CCGCTC 1 cut(s) 279
MboI GATC 2 cut(s) 441, 482
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 40, 423, 480
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 4 cut(s) 164, 565, 701, 746
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 470, 835
Mox20I TGGCCA 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 888, 916
MscI TGGCCA 1 cut(s) 753
MseI TTAA 1 cut(s) 950
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 3 cut(s) 324, 416, 489
MspR9I CCNGG 5 cut(s) 416, 425, 437, 490, 755
Mva1269I GAATGC 2 cut(s) 877, 929
MvaI CCWGG 3 cut(s) 425, 437, 755
MvnI CGCG 2 cut(s) 234, 338
MwoI GCNNNNNNNGC 5 cut(s) 69, 218, 326, 335, 569
NciI CCSGG 2 cut(s) 416, 490
NdeII GATC 2 cut(s) 441, 482
NlaIV GGNNCC 2 cut(s) 328, 369
NmeAIII GCCGAG 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 840
PaeR7I CTCGAG 2 cut(s) 458, 690
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 2 cut(s) 877, 929
PdmI GAANNNNTTC 2 cut(s) 888, 916
PfeI GAWTC 3 cut(s) 179, 770, 812
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 423
PkrI GCNGC 8 cut(s) 211, 307, 322, 342, 345, 399, 744, 763
PleI GAGTC 2 cut(s) 469, 834
PpsI GAGTC 2 cut(s) 469, 834
Psp124BI GAGCTC 2 cut(s) 40, 423
Psp6I CCWGG 3 cut(s) 423, 435, 753
PspFI CCCAGC 1 cut(s) 904
PspGI CCWGG 3 cut(s) 423, 435, 753
PspN4I GGNNCC 2 cut(s) 328, 369
PspPI GGNCC 2 cut(s) 433, 513
PstNI CAGNNNCTG 1 cut(s) 1002
PsuI RGATCY 1 cut(s) 482
RsaI GTAC 2 cut(s) 391, 846
RsaNI GTAC 2 cut(s) 390, 845
RseI CAYNNNNRTG 1 cut(s) 840
SacI GAGCTC 2 cut(s) 40, 423
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 950
SatI GCNGC 8 cut(s) 210, 306, 321, 341, 344, 398, 743, 762
Sau3AI GATC 2 cut(s) 441, 482
Sau96I GGNCC 2 cut(s) 433, 513
SchI GAGTC 2 cut(s) 470, 835
ScrFI CCNGG 5 cut(s) 416, 425, 437, 490, 755
SduI GDGCHC 3 cut(s) 40, 423, 480
SfaNI GCATC 2 cut(s) 237, 748
SfcI CTRYAG 1 cut(s) 787
Sfr274I CTCGAG 2 cut(s) 458, 690
SlaI CTCGAG 2 cut(s) 458, 690
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 4 cut(s) 143, 458, 690, 933
SmoI CTYRAG 4 cut(s) 143, 458, 690, 933
Sse9I AATT 4 cut(s) 164, 565, 701, 746
SspMI CTAG 3 cut(s) 816, 849, 893
SstI GAGCTC 2 cut(s) 40, 423
StyD4I CCNGG 5 cut(s) 414, 423, 435, 488, 753
TaaI ACNGT 1 cut(s) 868
TaqI TCGA 5 cut(s) 29, 249, 459, 691, 797
TasI AATT 4 cut(s) 164, 565, 701, 746
TauI GCSGC 6 cut(s) 212, 308, 323, 343, 745, 764
TfiI GAWTC 3 cut(s) 179, 770, 812
Tru1I TTAA 1 cut(s) 950
Tru9I TTAA 1 cut(s) 950
TscAI CASTG 3 cut(s) 613, 873, 883
TseI GCWGC 2 cut(s) 343, 397
TspDTI ATGAA 4 cut(s) 389, 795, 897, 976
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 3 cut(s) 613, 873, 883
Van91I CCANNNNNTGG 1 cut(s) 430
XapI RAATTY 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 815
XhoI CTCGAG 2 cut(s) 458, 690
XmnI GAANNNNTTC 2 cut(s) 888, 916
XspI CTAG 3 cut(s) 816, 849, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.