Rh5BG338000

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014823
Physical Location & Seq
Forward (+)
47442352 .. 47452126
9775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG338000.1

Sequence Viewer

Length: 1071 bp
ATGGATTTGTCAACCCTCCAAATCCAATCGAAGAGAGCTCCACCACCAGCAGCCTCTCGCAGCAATCGCCAATGCCTCCTCATCTCCTGCCTTTCTCTCCTCGCCCTCCCCTTCCTCTTCTACCTCGTCTCCACCGCCCTCAAGCTCCACCTCTCCCCCAAATTCACCCACTCCGAATCCACCCTCTTCGGCATTGTCATCACCGCCGCCCCCACCGCCTCCCGCATCCGCGTCTTCCATTTCCTCGACGCCACCGCTCCCTCCACCTCCTCCCGCTCTCGCCCCGCCCTCTCCTCCTTCGCCGCCCGCCCCGACGCCGCCGGCGCCTCCCTCGCGCCGCTGCTCCGCTTCGCCAAGTCGCAGGTGCCGATGAAAGAGCGAGCCAGTACGAAGCTGCTCTTGTTTGCTTCCCCGGAGCTCCAGGACTTGGGCCAGGAGATCGCCGAGAAGCTTCTCGAGTCGTGTAGGAAGGTGCTCAGATCTTCCGGGTTTTGGTTCAAGGACGATTGGGCCAGAGTGGTCTCAGGTGAAGAGCAAGGGGTTTATGCTTGGGTGAGTGCCAATTACGCTCTCGGAACATTGAAGAGTGAGGCTGAAGAAACCACTGGGATAGTTGAACTCGGTGGGGCTTCTTTGCAGGTTACATTTGCCCAAAAAGAAACACTCCAAGTGCAATCTTCTCCGTCTCGAGTTATCAAATTGTTTGGAGTTACTTATCACCTTTATAGCCACGGCTTGCCGCAATTTGGCCAGGATGCGGCTTGGGAATCATTGTATGAAAACTACAGAAAATCGACGCCTTTTTCAGATTCTAGAAAGGGGAGTCTTGTTCACCCTTGTGTACCTAGAGGATATAAGCTGACAGTGAATGCCAGTGATGAACAACTTCTAGCGTCTTCGCTGGGCGGAAACTTTTCTGAATGCAAGTCTCAAGTTTTGGCACTATTAAAGAGCAAACAAGATAAATGCGTGCAGGCACCTTGCACAATTGTCTCATCATTTCCTTTCGAGATAGGGGGCAAGCCAATTTCCGCAAACTTCTTATTTACTTCTGAGGTTGGTAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

356

Amino Acids

38.79

Weight (kDa)

9.19

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 56 - 330 4.3e-46 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014823)

Species Orthologous Gene IDs
malus_domestica MD11G1180600.v1.1
prunus_persica Prupe.6G153100_v2.0.a1
pyrus_communis pycom11g15580
rosa_chinensis RchiOBHm_Chr5g0049751
rosa_laevigata RLG00000034644
rosa_multiflora Rmu_sc0016686.1_g000002 Rmu_sc0020783.1_g000001
rosa_roxburghii Rroxscaffold_1G00031680
rosa_rugosa Rorug05G0250800 Rorug05G0250800 Rorug05G0250900
rosa_samantha Rh5AG326900 Rh5BG338000 Rh5CG362600 Rh5DG350200
rosa_wichuraiana Rw0G018430 Rw5G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 2 cut(s) 352, 628
AccB1I GGYRCC 3 cut(s) 323, 364, 976
AccB7I CCANNNNNTGG 1 cut(s) 427
AccBSI CCGCTC 2 cut(s) 257, 276
AccI GTMKAC 1 cut(s) 1063
AccII CGCG 2 cut(s) 231, 335
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 615
AcyI GRCGYC 4 cut(s) 249, 315, 324, 797
AfaI GTAC 2 cut(s) 388, 843
AfiI CCNNNNNNNGG 4 cut(s) 427, 492, 746, 757
AgsI TTSAA 3 cut(s) 499, 583, 617
AjnI CCWGG 3 cut(s) 420, 432, 750
AleI CACNNNNGTG 1 cut(s) 837
AluBI AGCT 6 cut(s) 38, 145, 394, 418, 451, 859
AluI AGCT 6 cut(s) 38, 145, 394, 418, 451, 859
Alw21I GWGCWC 3 cut(s) 40, 420, 477
Alw26I GTCTC 5 cut(s) 133, 526, 690, 933, 997
Ama87I CYCGRG 2 cut(s) 455, 687
AoxI GGCC 3 cut(s) 430, 510, 748
ApeKI GCWGC 4 cut(s) 50, 60, 340, 394
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 885, 913
AspLEI GCGC 2 cut(s) 326, 337
AspS9I GGNCC 2 cut(s) 430, 510
AsuC2I CCSGG 2 cut(s) 413, 487
AsuHPI GGTGA 6 cut(s) 157, 193, 539, 565, 710, 824
AvaI CYCGRG 2 cut(s) 455, 687
BalI TGGCCA 1 cut(s) 750
BanI GGYRCC 3 cut(s) 323, 364, 976
BanII GRGCYC 2 cut(s) 40, 420
BbsI GAAGAC 2 cut(s) 226, 888
Bbv12I GWGCWC 3 cut(s) 40, 420, 477
BbvI GCAGC 4 cut(s) 62, 72, 327, 381
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 3 cut(s) 422, 434, 752
BcnI CCSGG 2 cut(s) 413, 487
BcoDI GTCTC 5 cut(s) 133, 526, 690, 933, 997
BfaI CTAG 3 cut(s) 813, 846, 890
BfmI CTRYAG 1 cut(s) 784
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 2 cut(s) 352, 628
BglII AGATCT 1 cut(s) 479
Bme1390I CCNGG 5 cut(s) 413, 422, 434, 487, 752
BmeT110I CYCGRG 2 cut(s) 455, 687
BmgT120I GGNCC 2 cut(s) 430, 510
BmiI GGNNCC 3 cut(s) 325, 366, 978
BmrFI CCNGG 5 cut(s) 413, 422, 434, 487, 752
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 2 cut(s) 234, 745
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 226, 888
BpmI CTGGAG 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 125, 915
BpuMI CCSGG 2 cut(s) 413, 487
BsaHI GRCGYC 4 cut(s) 249, 315, 324, 797
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 411, 730
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 427, 492, 746, 757
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 384, 610, 873
BseBI CCWGG 3 cut(s) 422, 434, 752
BseDI CCNNGG 2 cut(s) 411, 730
BseGI GGATG 2 cut(s) 225, 760
BseLI CCNNNNNNNGG 4 cut(s) 427, 492, 746, 757
BseMII CTCAG 3 cut(s) 490, 537, 1044
BseNI ACTGG 3 cut(s) 384, 610, 873
BseRI GAGGAG 4 cut(s) 68, 89, 259, 283
BseXI GCAGC 4 cut(s) 62, 72, 327, 381
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 1 cut(s) 992
Bsh1236I CGCG 2 cut(s) 231, 335
BshFI GGCC 3 cut(s) 432, 512, 750
BshNI GGYRCC 3 cut(s) 323, 364, 976
BsiHKAI GWGCWC 3 cut(s) 40, 420, 477
BsiHKCI CYCGRG 2 cut(s) 455, 687
BsiSI CCGG 3 cut(s) 321, 413, 486
BslI CCNNNNNNNGG 4 cut(s) 427, 492, 746, 757
BsmAI GTCTC 5 cut(s) 133, 526, 690, 933, 997
BsmBI CGTCTC 2 cut(s) 133, 690
BsmI GAATGC 2 cut(s) 874, 926
BsnI GGCC 3 cut(s) 432, 512, 750
Bso31I GGTCTC 1 cut(s) 526
BsoBI CYCGRG 2 cut(s) 455, 687
Bsp1286I GDGCHC 3 cut(s) 40, 420, 477
Bsp143I GATC 2 cut(s) 438, 479
BspANI GGCC 3 cut(s) 432, 512, 750
BspCNI CTCAG 3 cut(s) 489, 536, 1045
BspFNI CGCG 2 cut(s) 231, 335
BspLI GGNNCC 3 cut(s) 325, 366, 978
BspMI ACCTGC 2 cut(s) 352, 628
BspQI GCTCTTC 1 cut(s) 525
BspT107I GGYRCC 3 cut(s) 323, 364, 976
BspTNI GGTCTC 1 cut(s) 526
BsrBI CCGCTC 2 cut(s) 257, 276
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 3 cut(s) 384, 610, 873
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 411, 730
BssMI GATC 2 cut(s) 438, 479
BssNI GRCGYC 4 cut(s) 249, 315, 324, 797
Bst2UI CCWGG 3 cut(s) 422, 434, 752
Bst4CI ACNGT 1 cut(s) 865
Bst6I CTCTTC 5 cut(s) 26, 122, 191, 525, 578
BstACI GRCGYC 4 cut(s) 249, 315, 324, 797
BstC8I GCNNGC 7 cut(s) 307, 322, 381, 737, 971, 975, 1022
BstDEI CTNAG 3 cut(s) 476, 523, 1053
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 2 cut(s) 225, 760
BstFNI CGCG 2 cut(s) 231, 335
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 326, 337
BstKTI GATC 2 cut(s) 441, 482
BstMAI GTCTC 5 cut(s) 133, 526, 690, 933, 997
BstMBI GATC 2 cut(s) 438, 479
BstMWI GCNNNNNNNGC 5 cut(s) 66, 215, 323, 332, 566
BstNI CCWGG 3 cut(s) 422, 434, 752
BstSCI CCNGG 5 cut(s) 411, 420, 432, 485, 750
BstSFI CTRYAG 1 cut(s) 784
BstUI CGCG 2 cut(s) 231, 335
BstV1I GCAGC 4 cut(s) 62, 72, 327, 381
BstV2I GAAGAC 2 cut(s) 226, 888
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BsuRI GGCC 3 cut(s) 432, 512, 750
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 2 cut(s) 225, 760
BtsIMutI CAGTG 3 cut(s) 603, 870, 880
BveI ACCTGC 2 cut(s) 352, 628
Cac8I GCNNGC 7 cut(s) 307, 322, 381, 737, 971, 975, 1022
CfoI GCGC 2 cut(s) 326, 337
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 430, 510
CseI GACGC 5 cut(s) 220, 257, 323, 805, 882
Csp6I GTAC 2 cut(s) 387, 842
CviQI GTAC 2 cut(s) 387, 842
DdeI CTNAG 3 cut(s) 476, 523, 1053
DinI GGCGCC 1 cut(s) 325
DpnI GATC 2 cut(s) 440, 481
DpnII GATC 2 cut(s) 438, 479
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 5 cut(s) 26, 122, 191, 525, 578
EarI CTCTTC 5 cut(s) 26, 122, 191, 525, 578
EciI GGCGGA 1 cut(s) 921
Ecl136II GAGCTC 2 cut(s) 38, 418
Eco24I GRGCYC 2 cut(s) 40, 420
Eco31I GGTCTC 1 cut(s) 526
Eco53kI GAGCTC 2 cut(s) 38, 418
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 2 cut(s) 455, 687
EcoICRI GAGCTC 2 cut(s) 38, 418
EcoRII CCWGG 3 cut(s) 420, 432, 750
EcoT38I GRGCYC 2 cut(s) 40, 420
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
Esp3I CGTCTC 2 cut(s) 133, 690
FaiI YATR 4 cut(s) 546, 726, 777, 855
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FauI CCCGC 4 cut(s) 230, 281, 292, 314
FblI GTMKAC 1 cut(s) 1063
FokI GGATG 2 cut(s) 212, 767
FriOI GRGCYC 2 cut(s) 40, 420
FspBI CTAG 3 cut(s) 813, 846, 890
GlaI GCGC 2 cut(s) 325, 336
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 3 cut(s) 432, 512, 750
HapII CCGG 3 cut(s) 321, 413, 486
HgaI GACGC 5 cut(s) 220, 257, 323, 805, 882
HhaI GCGC 2 cut(s) 326, 337
Hin1I GRCGYC 4 cut(s) 249, 315, 324, 797
Hin6I GCGC 2 cut(s) 324, 335
HinP1I GCGC 2 cut(s) 324, 335
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 5 cut(s) 176, 458, 767, 809, 823
HpaII CCGG 3 cut(s) 321, 413, 486
HphI GGTGA 6 cut(s) 157, 193, 539, 565, 710, 824
Hpy166II GTNNAC 4 cut(s) 12, 832, 842, 1064
Hpy188I TCNGA 6 cut(s) 175, 479, 575, 808, 919, 1054
Hpy188III TCNNGA 4 cut(s) 455, 687, 813, 1009
Hpy8I GTNNAC 4 cut(s) 12, 832, 842, 1064
Hpy99I CGWCG 3 cut(s) 251, 317, 799
HpyAV CCTTC 3 cut(s) 121, 307, 463
HpyCH4III ACNGT 1 cut(s) 865
HpyCH4V TGCA 5 cut(s) 637, 673, 924, 973, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 215, 323, 332, 566
HpyF3I CTNAG 3 cut(s) 476, 523, 1053
Hsp92I GRCGYC 4 cut(s) 249, 315, 324, 797
HspAI GCGC 2 cut(s) 324, 335
KasI GGCGCC 1 cut(s) 323
KroI GCCGGC 1 cut(s) 320
KroNI GCCGGC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 438, 479
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 6 cut(s) 43, 150, 262, 348, 415, 423
Lsp1109I GCAGC 4 cut(s) 62, 72, 327, 381
LweI GCATC 2 cut(s) 234, 745
MaeI CTAG 3 cut(s) 813, 846, 890
MaeIII GTNAC 2 cut(s) 640, 709
MalI GATC 2 cut(s) 440, 481
MbiI CCGCTC 2 cut(s) 257, 276
MboI GATC 2 cut(s) 438, 479
MfeI CAATTG 1 cut(s) 987
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 3 cut(s) 40, 420, 477
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 6 cut(s) 161, 562, 698, 743, 987, 1026
MluNI TGGCCA 1 cut(s) 750
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 2 cut(s) 467, 832
Mox20I TGGCCA 1 cut(s) 750
MreI CGCCGGCG 1 cut(s) 320
MroNI GCCGGC 1 cut(s) 320
MroXI GAANNNNTTC 2 cut(s) 885, 913
MscI TGGCCA 1 cut(s) 750
MseI TTAA 1 cut(s) 947
MslI CAYNNNNRTG 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 3 cut(s) 321, 413, 486
MspR9I CCNGG 5 cut(s) 413, 422, 434, 487, 752
MunI CAATTG 1 cut(s) 987
Mva1269I GAATGC 2 cut(s) 874, 926
MvaI CCWGG 3 cut(s) 422, 434, 752
MvnI CGCG 2 cut(s) 231, 335
MwoI GCNNNNNNNGC 5 cut(s) 66, 215, 323, 332, 566
NaeI GCCGGC 1 cut(s) 322
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 413, 487
NdeII GATC 2 cut(s) 438, 479
NgoMIV GCCGGC 1 cut(s) 320
NlaIV GGNNCC 3 cut(s) 325, 366, 978
NmeAIII GCCGAG 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 837
PaeR7I CTCGAG 2 cut(s) 455, 687
PaqCI CACCTGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PctI GAATGC 2 cut(s) 874, 926
PdiI GCCGGC 1 cut(s) 322
PdmI GAANNNNTTC 2 cut(s) 885, 913
PfeI GAWTC 3 cut(s) 176, 767, 809
PflMI CCANNNNNTGG 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 420
PleI GAGTC 2 cut(s) 466, 831
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 2 cut(s) 466, 831
Psp124BI GAGCTC 2 cut(s) 40, 420
Psp6I CCWGG 3 cut(s) 420, 432, 750
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 3 cut(s) 420, 432, 750
PspN4I GGNNCC 3 cut(s) 325, 366, 978
PspPI GGNCC 2 cut(s) 430, 510
PsuI RGATCY 1 cut(s) 479
RsaI GTAC 2 cut(s) 388, 843
RsaNI GTAC 2 cut(s) 387, 842
RseI CAYNNNNRTG 1 cut(s) 837
SacI GAGCTC 2 cut(s) 40, 420
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 947
Sau3AI GATC 2 cut(s) 438, 479
Sau96I GGNCC 2 cut(s) 430, 510
SchI GAGTC 2 cut(s) 467, 832
ScrFI CCNGG 5 cut(s) 413, 422, 434, 487, 752
SduI GDGCHC 3 cut(s) 40, 420, 477
SfaNI GCATC 2 cut(s) 234, 745
SfcI CTRYAG 1 cut(s) 784
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 2 cut(s) 455, 687
SgrAI CRCCGGYG 1 cut(s) 320
SlaI CTCGAG 2 cut(s) 455, 687
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 4 cut(s) 140, 455, 687, 930
SmoI CTYRAG 4 cut(s) 140, 455, 687, 930
Sse9I AATT 6 cut(s) 161, 562, 698, 743, 987, 1026
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 3 cut(s) 813, 846, 890
SstI GAGCTC 2 cut(s) 40, 420
StyD4I CCNGG 5 cut(s) 411, 420, 432, 485, 750
TaaI ACNGT 1 cut(s) 865
TaqI TCGA 6 cut(s) 29, 246, 456, 688, 794, 1008
TasI AATT 6 cut(s) 161, 562, 698, 743, 987, 1026
TauI GCSGC 6 cut(s) 209, 305, 320, 340, 742, 761
TfiI GAWTC 3 cut(s) 176, 767, 809
Tru1I TTAA 1 cut(s) 947
Tru9I TTAA 1 cut(s) 947
TscAI CASTG 3 cut(s) 610, 870, 880
TseI GCWGC 4 cut(s) 50, 60, 340, 394
TspDTI ATGAA 3 cut(s) 386, 792, 894
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 3 cut(s) 610, 870, 880
Van91I CCANNNNNTGG 1 cut(s) 427
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 812
XhoI CTCGAG 2 cut(s) 455, 687
XmiI GTMKAC 1 cut(s) 1063
XmnI GAANNNNTTC 2 cut(s) 885, 913
XspI CTAG 3 cut(s) 813, 846, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.