Rh5AG326900

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014823
Physical Location & Seq
Forward (+)
49342242 .. 49351430
9189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG326900.1

Sequence Viewer

Length: 1077 bp
ATGGATTTGTCAACCCTCCAAATCCAATCGAAGAGAGCTCCACCAGCACCAGTCTCTCGCAACAATCGCCAATGCCTCCTCATCTCCTGCCTCTCTCTCCTCGCCCTCCCCTTCCTCTTCTACCTCGTCTCCACCGCCCACAAGCTCCACCTCTCCCCCAAATTCACCCACTCCGAATCCACCCTCTTCGGCATTGTCATCACCGCCGCCCCCACCGCCTCCCGCATCCGCGTCTTCCATTTCCTCGACGCCACCGCCACCGCCCCCTCCACCTCCTCCCGCTCTCGCTCCTCCCTCTCCTCCTTCGCCGCCCGCCCCGACGCCGCCGGCGCCTCCCTCGCGCCGCTGCTCCGCTTCGCCAAGTCCCAGGTGCCGATGAAAGAGCGAGCCAGTACGAAGCTGCTCTTGTTTGCTTCCCTGGAGCTCCAGGACTTGGGCCAGGAGATCGCCGAGAAGCTTCTCGAGTCGTGTAGGAAGGTGCTCAGATCTTCCGGGTTTTGGTTCAAGGACGATTGGGCCAGAGTGGTCTCAGGTGAAGAGCAAGGGGTTTATGCTTGGGTGAGTGCCAATTACGCTCTCGGAACATTGAAGAGTGAGGCTGAAGAAACCACTGGGATAGTTGAACTCGGTGGGGCTTCTTTGCAGGTTACATTTGCCCAAAAAGAAACACTCCAAGTGCAATCTTCTCCGTCTCGAGTTATCAAATTGTTTGGAGTTACTTATCACCTTTATAGCCACGGCTTGCCGCAATTTGGCCAGGATGCGGCTTGGGAATCATTGTATGAAAACTACAGAAAATCGACGCCTTTTTCAGATTCTAGAAAGGGGAGTCTTGTTCACCCTTGTGTACCTAGAGGATATAAGCTGACAGTGAATGCCAGTGATGAACAACTTCTAGTGTCTTCGCTGGGCGGAAACTTTTCTGAATGCAAGTCTCAAGTTTTGGCACTATTAAAGAGCAAACAAGATAAATGCGTGCAGGCACCTTGCACAATTGTCTCATCATTTCCTTTCGAGATAGGGGGCAAGCCAATTTCCGCAAACTTCTTATTTACTTCTGAGGTTGGTAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

358

Amino Acids

39.09

Weight (kDa)

9.19

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 56 - 332 2.2e-45 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014823)

Species Orthologous Gene IDs
malus_domestica MD11G1180600.v1.1
prunus_persica Prupe.6G153100_v2.0.a1
pyrus_communis pycom11g15580
rosa_chinensis RchiOBHm_Chr5g0049751
rosa_laevigata RLG00000034644
rosa_multiflora Rmu_sc0016686.1_g000002 Rmu_sc0020783.1_g000001
rosa_roxburghii Rroxscaffold_1G00031680
rosa_rugosa Rorug05G0250800 Rorug05G0250800 Rorug05G0250900
rosa_samantha Rh5AG326900 Rh5BG338000 Rh5CG362600 Rh5DG350200
rosa_wichuraiana Rw0G018430 Rw5G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 3 cut(s) 329, 370, 982
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 282
AccI GTMKAC 1 cut(s) 1069
AccII CGCG 2 cut(s) 231, 341
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 4 cut(s) 249, 321, 330, 803
AfaI GTAC 2 cut(s) 394, 849
AfiI CCNNNNNNNGG 4 cut(s) 433, 498, 752, 763
AgsI TTSAA 3 cut(s) 505, 589, 623
AjnI CCWGG 5 cut(s) 366, 417, 426, 438, 756
AleI CACNNNNGTG 1 cut(s) 843
AluBI AGCT 6 cut(s) 38, 145, 400, 424, 457, 865
AluI AGCT 6 cut(s) 38, 145, 400, 424, 457, 865
Alw21I GWGCWC 3 cut(s) 40, 426, 483
Alw26I GTCTC 6 cut(s) 58, 133, 532, 696, 939, 1003
Ama87I CYCGRG 2 cut(s) 461, 693
AoxI GGCC 3 cut(s) 436, 516, 754
ApeKI GCWGC 2 cut(s) 346, 400
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 891, 919
AspLEI GCGC 2 cut(s) 332, 343
AspS9I GGNCC 2 cut(s) 436, 516
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 6 cut(s) 157, 193, 545, 571, 716, 830
AvaI CYCGRG 2 cut(s) 461, 693
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 3 cut(s) 329, 370, 982
BanII GRGCYC 2 cut(s) 40, 426
BbsI GAAGAC 2 cut(s) 226, 894
Bbv12I GWGCWC 3 cut(s) 40, 426, 483
BbvI GCAGC 2 cut(s) 333, 387
BceAI ACGGC 1 cut(s) 754
BciT130I CCWGG 5 cut(s) 368, 419, 428, 440, 758
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 6 cut(s) 58, 133, 532, 696, 939, 1003
BfaI CTAG 3 cut(s) 819, 852, 896
BfmI CTRYAG 1 cut(s) 790
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 485
BisI GCNGC 8 cut(s) 207, 309, 324, 344, 347, 401, 746, 765
BlsI GCNGC 8 cut(s) 208, 310, 325, 345, 348, 402, 747, 766
Bme1390I CCNGG 6 cut(s) 368, 419, 428, 440, 493, 758
BmeT110I CYCGRG 2 cut(s) 461, 693
BmgT120I GGNCC 2 cut(s) 436, 516
BmiI GGNNCC 3 cut(s) 331, 372, 984
BmrFI CCNGG 6 cut(s) 368, 419, 428, 440, 493, 758
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 2 cut(s) 234, 751
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 226, 894
BpmI CTGGAG 2 cut(s) 410, 440
BpuEI CTTGAG 1 cut(s) 921
BpuMI CCSGG 1 cut(s) 493
BsaHI GRCGYC 4 cut(s) 249, 321, 330, 803
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 366, 417, 736
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 433, 498, 752, 763
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 4 cut(s) 50, 390, 616, 879
BseBI CCWGG 5 cut(s) 368, 419, 428, 440, 758
BseDI CCNNGG 3 cut(s) 366, 417, 736
BseGI GGATG 2 cut(s) 225, 766
BseLI CCNNNNNNNGG 4 cut(s) 433, 498, 752, 763
BseMII CTCAG 3 cut(s) 496, 543, 1050
BseNI ACTGG 4 cut(s) 50, 390, 616, 879
BseRI GAGGAG 5 cut(s) 68, 89, 265, 280, 289
BseXI GCAGC 2 cut(s) 333, 387
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 998
Bsh1236I CGCG 2 cut(s) 231, 341
BshFI GGCC 3 cut(s) 438, 518, 756
BshNI GGYRCC 3 cut(s) 329, 370, 982
BsiHKAI GWGCWC 3 cut(s) 40, 426, 483
BsiHKCI CYCGRG 2 cut(s) 461, 693
BsiSI CCGG 2 cut(s) 327, 492
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 4 cut(s) 433, 498, 752, 763
BsmAI GTCTC 6 cut(s) 58, 133, 532, 696, 939, 1003
BsmBI CGTCTC 2 cut(s) 133, 696
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 2 cut(s) 880, 932
BsnI GGCC 3 cut(s) 438, 518, 756
Bso31I GGTCTC 1 cut(s) 532
BsoBI CYCGRG 2 cut(s) 461, 693
Bsp1286I GDGCHC 3 cut(s) 40, 426, 483
Bsp143I GATC 2 cut(s) 444, 485
BspANI GGCC 3 cut(s) 438, 518, 756
BspCNI CTCAG 3 cut(s) 495, 542, 1051
BspFNI CGCG 2 cut(s) 231, 341
BspLI GGNNCC 3 cut(s) 331, 372, 984
BspMI ACCTGC 1 cut(s) 634
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 3 cut(s) 329, 370, 982
BspTNI GGTCTC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 4 cut(s) 50, 390, 616, 879
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 366, 417, 736
BssMI GATC 2 cut(s) 444, 485
BssNI GRCGYC 4 cut(s) 249, 321, 330, 803
Bst2UI CCWGG 5 cut(s) 368, 419, 428, 440, 758
Bst4CI ACNGT 1 cut(s) 871
Bst6I CTCTTC 5 cut(s) 26, 122, 191, 531, 584
BstACI GRCGYC 4 cut(s) 249, 321, 330, 803
BstC8I GCNNGC 7 cut(s) 313, 328, 387, 743, 977, 981, 1028
BstDEI CTNAG 3 cut(s) 482, 529, 1059
BstDSI CCRYGG 1 cut(s) 736
BstF5I GGATG 2 cut(s) 225, 766
BstFNI CGCG 2 cut(s) 231, 341
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 332, 343
BstKTI GATC 2 cut(s) 447, 488
BstMAI GTCTC 6 cut(s) 58, 133, 532, 696, 939, 1003
BstMBI GATC 2 cut(s) 444, 485
BstMWI GCNNNNNNNGC 6 cut(s) 44, 66, 215, 329, 338, 572
BstNI CCWGG 5 cut(s) 368, 419, 428, 440, 758
BstSCI CCNGG 6 cut(s) 366, 417, 426, 438, 491, 756
BstSFI CTRYAG 1 cut(s) 790
BstUI CGCG 2 cut(s) 231, 341
BstV1I GCAGC 2 cut(s) 333, 387
BstV2I GAAGAC 2 cut(s) 226, 894
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 3 cut(s) 438, 518, 756
BtgI CCRYGG 1 cut(s) 736
BtsCI GGATG 2 cut(s) 225, 766
BtsIMutI CAGTG 3 cut(s) 609, 876, 886
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 7 cut(s) 313, 328, 387, 743, 977, 981, 1028
CfoI GCGC 2 cut(s) 332, 343
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 436, 516
CseI GACGC 4 cut(s) 220, 257, 329, 811
Csp6I GTAC 2 cut(s) 393, 848
CviQI GTAC 2 cut(s) 393, 848
DdeI CTNAG 3 cut(s) 482, 529, 1059
DinI GGCGCC 1 cut(s) 331
DpnI GATC 2 cut(s) 446, 487
DpnII GATC 2 cut(s) 444, 485
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 5 cut(s) 26, 122, 191, 531, 584
EarI CTCTTC 5 cut(s) 26, 122, 191, 531, 584
EciI GGCGGA 1 cut(s) 927
Ecl136II GAGCTC 2 cut(s) 38, 424
Eco24I GRGCYC 2 cut(s) 40, 426
Eco31I GGTCTC 1 cut(s) 532
Eco53kI GAGCTC 2 cut(s) 38, 424
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 2 cut(s) 461, 693
EcoICRI GAGCTC 2 cut(s) 38, 424
EcoRII CCWGG 5 cut(s) 366, 417, 426, 438, 756
EcoT38I GRGCYC 2 cut(s) 40, 426
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
Esp3I CGTCTC 2 cut(s) 133, 696
FaiI YATR 4 cut(s) 552, 732, 783, 861
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 349
FauI CCCGC 3 cut(s) 230, 287, 320
FblI GTMKAC 1 cut(s) 1069
Fnu4HI GCNGC 8 cut(s) 207, 309, 324, 344, 347, 401, 746, 765
FokI GGATG 2 cut(s) 212, 773
FriOI GRGCYC 2 cut(s) 40, 426
Fsp4HI GCNGC 8 cut(s) 207, 309, 324, 344, 347, 401, 746, 765
FspBI CTAG 3 cut(s) 819, 852, 896
GlaI GCGC 2 cut(s) 331, 342
GluI GCNGC 8 cut(s) 207, 309, 324, 344, 347, 401, 746, 765
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 2 cut(s) 410, 440
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 3 cut(s) 438, 518, 756
HapII CCGG 2 cut(s) 327, 492
HgaI GACGC 4 cut(s) 220, 257, 329, 811
HhaI GCGC 2 cut(s) 332, 343
Hin1I GRCGYC 4 cut(s) 249, 321, 330, 803
Hin6I GCGC 2 cut(s) 330, 341
HinP1I GCGC 2 cut(s) 330, 341
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 5 cut(s) 176, 464, 773, 815, 829
HpaII CCGG 2 cut(s) 327, 492
HphI GGTGA 6 cut(s) 157, 193, 545, 571, 716, 830
Hpy166II GTNNAC 4 cut(s) 12, 838, 848, 1070
Hpy188I TCNGA 6 cut(s) 175, 485, 581, 814, 925, 1060
Hpy188III TCNNGA 4 cut(s) 461, 693, 819, 1015
Hpy8I GTNNAC 4 cut(s) 12, 838, 848, 1070
Hpy99I CGWCG 3 cut(s) 251, 323, 805
HpyAV CCTTC 3 cut(s) 121, 313, 469
HpyCH4III ACNGT 1 cut(s) 871
HpyCH4V TGCA 5 cut(s) 643, 679, 930, 979, 990
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 66, 215, 329, 338, 572
HpyF3I CTNAG 3 cut(s) 482, 529, 1059
Hsp92I GRCGYC 4 cut(s) 249, 321, 330, 803
HspAI GCGC 2 cut(s) 330, 341
KasI GGCGCC 1 cut(s) 329
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 444, 485
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 6 cut(s) 43, 150, 293, 354, 421, 429
Lsp1109I GCAGC 2 cut(s) 333, 387
LweI GCATC 2 cut(s) 234, 751
MaeI CTAG 3 cut(s) 819, 852, 896
MaeIII GTNAC 2 cut(s) 646, 715
MalI GATC 2 cut(s) 446, 487
MbiI CCGCTC 1 cut(s) 282
MboI GATC 2 cut(s) 444, 485
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 3 cut(s) 40, 426, 483
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 6 cut(s) 161, 568, 704, 749, 993, 1032
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 2 cut(s) 473, 838
Mox20I TGGCCA 1 cut(s) 756
MreI CGCCGGCG 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 2 cut(s) 891, 919
MscI TGGCCA 1 cut(s) 756
MseI TTAA 1 cut(s) 953
MslI CAYNNNNRTG 1 cut(s) 843
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 327, 492
MspR9I CCNGG 6 cut(s) 368, 419, 428, 440, 493, 758
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 2 cut(s) 880, 932
MvaI CCWGG 5 cut(s) 368, 419, 428, 440, 758
MvnI CGCG 2 cut(s) 231, 341
MwoI GCNNNNNNNGC 6 cut(s) 44, 66, 215, 329, 338, 572
NaeI GCCGGC 1 cut(s) 328
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 1 cut(s) 493
NdeII GATC 2 cut(s) 444, 485
NgoMIV GCCGGC 1 cut(s) 326
NlaIV GGNNCC 3 cut(s) 331, 372, 984
NmeAIII GCCGAG 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 843
PaeR7I CTCGAG 2 cut(s) 461, 693
PciSI GCTCTTC 1 cut(s) 531
PctI GAATGC 2 cut(s) 880, 932
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 2 cut(s) 891, 919
PfeI GAWTC 3 cut(s) 176, 773, 815
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 8 cut(s) 208, 310, 325, 345, 348, 402, 747, 766
PleI GAGTC 2 cut(s) 472, 837
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 2 cut(s) 472, 837
Psp124BI GAGCTC 2 cut(s) 40, 426
Psp6I CCWGG 5 cut(s) 366, 417, 426, 438, 756
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 5 cut(s) 366, 417, 426, 438, 756
PspN4I GGNNCC 3 cut(s) 331, 372, 984
PspPI GGNCC 2 cut(s) 436, 516
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 2 cut(s) 394, 849
RsaNI GTAC 2 cut(s) 393, 848
RseI CAYNNNNRTG 1 cut(s) 843
SacI GAGCTC 2 cut(s) 40, 426
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 953
SatI GCNGC 8 cut(s) 207, 309, 324, 344, 347, 401, 746, 765
Sau3AI GATC 2 cut(s) 444, 485
Sau96I GGNCC 2 cut(s) 436, 516
SchI GAGTC 2 cut(s) 473, 838
ScrFI CCNGG 6 cut(s) 368, 419, 428, 440, 493, 758
SduI GDGCHC 3 cut(s) 40, 426, 483
SfaNI GCATC 2 cut(s) 234, 751
SfcI CTRYAG 1 cut(s) 790
SfoI GGCGCC 1 cut(s) 331
Sfr274I CTCGAG 2 cut(s) 461, 693
SgrAI CRCCGGYG 1 cut(s) 326
SlaI CTCGAG 2 cut(s) 461, 693
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 3 cut(s) 461, 693, 936
SmoI CTYRAG 3 cut(s) 461, 693, 936
Sse9I AATT 6 cut(s) 161, 568, 704, 749, 993, 1032
SspDI GGCGCC 1 cut(s) 329
SspMI CTAG 3 cut(s) 819, 852, 896
SstI GAGCTC 2 cut(s) 40, 426
StyD4I CCNGG 6 cut(s) 366, 417, 426, 438, 491, 756
TaaI ACNGT 1 cut(s) 871
TaqI TCGA 6 cut(s) 29, 246, 462, 694, 800, 1014
TasI AATT 6 cut(s) 161, 568, 704, 749, 993, 1032
TauI GCSGC 6 cut(s) 209, 311, 326, 346, 748, 767
TfiI GAWTC 3 cut(s) 176, 773, 815
Tru1I TTAA 1 cut(s) 953
Tru9I TTAA 1 cut(s) 953
TscAI CASTG 3 cut(s) 616, 876, 886
TseI GCWGC 2 cut(s) 346, 400
TspDTI ATGAA 3 cut(s) 392, 798, 900
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 616, 876, 886
Van91I CCANNNNNTGG 1 cut(s) 433
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 818
XhoI CTCGAG 2 cut(s) 461, 693
XmiI GTMKAC 1 cut(s) 1069
XmnI GAANNNNTTC 2 cut(s) 891, 919
XspI CTAG 3 cut(s) 819, 852, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.