Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030247.1

Orthogroup ID

OG0001036

Physical Location & Seq

Genomic Coordinates Reverse (-)

1600 .. 5089

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030247.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

atgagtggcgctgtgcttgttgctgttgctgctgctgttgggaacttattgcaaggatgggacaacgctacaatcgcagcttccgttttgtacataaagagggagttcaatttggagagtcaacctgcagtggaagggctgatagtggctatgtcacttataggggcaactttggttacaacatgctcgggagctgtagcggacaggataggccgccgtcctatgcttataatctcttctgtgctttactttcttagtggtatcgtaatgttatgggctcccaatgtttatatccttctcttggctaggcttttggatggattggggattggtttggcagttacccttgtcccgctttatatatctgagacagctccacctgaaataaggggatcattgaatacccttccgcagttcactggctctggtgggatgttcttgtcttattgtatggtttttgtgatgtccttgacggaggcaccaagttggaggttgatgcttggggttctaactattccgtcccttgtttattttgcattgactgtatttttcttgcctgagtctccacggtggctagtgagtaagggacgaatgcttgaggcaaagaaagttttacagagtctgcgcggcagagaagacgtctctggtgagatggctttgcttgttgagggtcttggagttgggggtgagacatctttcgaggagtacataattggtccagacaatgaccttgttggtgaccatgagttatctgttgacaaggataaaatcaaattatatgggactgaacaaggtcaatcatgggttgccagacctgtgactggacaaagcactatcggccttgtgtcccggcatgggagcatggcaagtaaaagcgggcttgttgatcctcttgtcacactcttcggcagtgttcatgaaaggctccctgatacaggaagcaagggcagtatgcttttcccacactttggcagcatgttcagtgtgggagggaatcaacccaggcacgaagagtgggatgaggagagccttgcacccagagaaggcgatgactatgcatccgatgcaggtggcggtggcgattcagatgacaatttgcatagtccattgatctcgcgtcagacaacaagcattgaaaagggcatgggcccaactaaccacggaagccttgttagcatgagaaacaacagtctcctaggtggcgatccagtcagtagcactgggattggtggcggttggcagctagcatggaaatggtctgagagagatggccaggatgggcataaggagggaggatttaaaagaatttatttgcaccaagaaggtgtgcctggttctcgtcgtgggtctattgtttcaatacctggtggtgatgtaccagcagatagtgagttcatccaggcttctgctttggtgagccaaccggctctttattccagagatcttatccaacaacatcatccagttggaccagcaatggttcacccagctgcagcttctcataaaggtacaacttggagcgatcttttcgaaccaggagtcaagcatgctttggttgttggtgtcggaattcaaatacttcagcagttctctggcataaatggggttctctactacacacctcaaattcttgagcaggccggtgttggagtgcttctttcaaaccttggtcttagctcagcttctgcatctctgcttattagtggattgacaaccttattgatgcttcctagtattgctgttgccatgaggctcatggatatctctggcagaaggaccttactgctcaccacaatccccatcttgatactctctctcgtgatcctagtccttggaagccttgtgaatttcggtagcgttgtgaatgcagcaatctcaactggtagcgttgtgctctacttctgttcctttgtgatggggttcggaccagtccccaacattctctgtgcggaaatcttccctacccgagtacgaggtctctgcattgccatctgtgccctcacattttggattggcgacatcatcgtcacctactccctcccggtgctgctcaaatccgtcggccttactggcgtttttggcatgtacgctgtagtgtgcatcattgcttggttttttgttttcatgaaagttccggaaaccaaaggcatgccccttgaagttatcaccgagttcttctctgttggtgcaaagcaggctgcagctgccaaggacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

739

Amino Acids

78.61

Weight (kDa)

5.58

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300
fragaria_vesca	FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950
malus_domestica	MD05G1139800.v1.1 MD06G1005100.v1.1 MD10G1142100.v1.1
prunus_persica	Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1
pyrus_communis	pycom05g13500 pycom10g12180
rosa_chinensis	RchiOBHm_Chr6g0280981 RchiOBHm_Chr7g0216501
rosa_laevigata	RLG00000002567 RLG00000002578 RLG00000013010
rosa_multiflora	Rmu_sc0000692.1_g000001 Rmu_sc0030247.1_g000002 Rmu_sc0030424.1_g000003 Rmu_sc0034915.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243170 Rroxscaffold_7G00187430
rosa_rugosa	Rorug06G0137300 Rorug06G0137400 Rorug06G0137500 Rorug07G0160700
rosa_samantha	Rh6AG249900 Rh6CG252500 Rh7BG291500 Rh7DG301100
rosa_wichuraiana	Rw6G021600 Rw7G025360 Rw7G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AarI	CACCTGC	1 cut(s)	1058
AasI	GACNNNNNNGTC	1 cut(s)	2024
AatII	GACGTC	1 cut(s)	642
Acc36I	ACCTGC	2 cut(s)	133, 1058
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccII	CGCG	2 cut(s)	627, 1117
AccIII	TCCGGA	1 cut(s)	2134
AciI	CCGC	9 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233, 1949
AclWI	GGATC	4 cut(s)	400, 881, 1199, 1816
AcoI	YGGCCR	1 cut(s)	1270
AcsI	RAATTY	4 cut(s)	1305, 1569, 1626, 1846
AcuI	CTGAAG	1 cut(s)	1565
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	6 cut(s)	92, 707, 1377, 1510, 1971, 2087
AfiI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
AgsI	TTSAA	7 cut(s)	109, 400, 1136, 1359, 1574, 1662, 2159
AjnI	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
AluBI	AGCT	9 cut(s)	80, 194, 374, 1243, 1490, 1496, 1677, 1682, 2204
AluI	AGCT	9 cut(s)	80, 194, 374, 1243, 1490, 1496, 1677, 1682, 2204
Alw21I	GWGCWC	1 cut(s)	1896
Alw26I	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1982
AlwI	GGATC	4 cut(s)	400, 881, 1199, 1816
AlwNI	CAGNNNCTG	2 cut(s)	622, 1685
Ama87I	CYCGRG	2 cut(s)	187, 1965
Aor13HI	TCCGGA	1 cut(s)	2134
AoxI	GGCC	6 cut(s)	211, 838, 1147, 1270, 1638, 2062
ApaI	GGGCCC	1 cut(s)	1151
ApoI	RAATTY	4 cut(s)	1305, 1569, 1626, 1846
ArsI	GACNNNNNNTTYG	2 cut(s)	1524, 1556
AspA2I	CCTAGG	1 cut(s)	1195
AspLEI	GCGC	2 cut(s)	11, 627
AspS9I	GGNCC	6 cut(s)	716, 1147, 1148, 1469, 1776, 1925
AsuC2I	CCSGG	2 cut(s)	850, 2042
AsuHPI	GGTGA	9 cut(s)	659, 698, 749, 1382, 1426, 1475, 1780, 2020, 2158
AsuII	TTCGAA	1 cut(s)	1530
AsuNHI	GCTAGC	1 cut(s)	1243
AvaI	CYCGRG	2 cut(s)	187, 1965
AvaII	GGWCC	4 cut(s)	716, 1469, 1776, 1925
AvrII	CCTAGG	1 cut(s)	1195
BaeGI	GKGCMC	2 cut(s)	1151, 1999
BalI	TGGCCA	1 cut(s)	1272
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	280, 1151
BauI	CACGAG	1 cut(s)	1817
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	1896
BccI	CCATC	8 cut(s)	51, 311, 646, 1262, 1271, 1808, 1909, 1997
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	4 cut(s)	1037, 1071, 1962, 1996
BciT130I	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BcnI	CCSGG	2 cut(s)	850, 2042
BcoDI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1982
BfaI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1731, 1826
BfmI	CTRYAG	5 cut(s)	126, 195, 1491, 2091, 2199
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	133, 1058
BglI	GCCNNNNNGGC	1 cut(s)	2070
BglII	AGATCT	1 cut(s)	1441
BlnI	CCTAGG	1 cut(s)	1195
BlpI	GCTNAGC	1 cut(s)	1678
Bme1390I	CCNGG	8 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536, 2042
Bme18I	GGWCC	4 cut(s)	716, 1469, 1776, 1925
BmeT110I	CYCGRG	2 cut(s)	187, 1965
BmgT120I	GGNCC	6 cut(s)	716, 1147, 1148, 1469, 1776, 1925
BmiI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BmrFI	CCNGG	8 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536, 2042
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	6 cut(s)	486, 1054, 1067, 1697, 1713, 2109
BmtI	GCTAGC	1 cut(s)	1247
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	2162, 2194
Bpu1102I	GCTNAGC	1 cut(s)	1678
Bpu14I	TTCGAA	1 cut(s)	1530
BpuEI	CTTGAG	2 cut(s)	617, 1652
BpuMI	CCSGG	2 cut(s)	850, 2042
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	1982
BsaJI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1666, 1831, 2208
BsaWI	WCCGGW	1 cut(s)	2134
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
Bse118I	RCCGGY	2 cut(s)	1423, 1640
Bse1I	ACTGG	8 cut(s)	424, 826, 1208, 1225, 1463, 1885, 1928, 2074
Bse3DI	GCAATG	3 cut(s)	1482, 1983, 2103
BseAI	TCCGGA	1 cut(s)	2134
BseBI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BseDI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1666, 1831, 2208
BseGI	GGATG	8 cut(s)	62, 322, 438, 1024, 1058, 1282, 1395, 1459
BseLI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
BseMI	GCAATG	3 cut(s)	1482, 1983, 2103
BseMII	CTCAG	4 cut(s)	357, 549, 1251, 1692
BseNI	ACTGG	8 cut(s)	424, 826, 1208, 1225, 1463, 1885, 1928, 2074
BseRI	GAGGAG	2 cut(s)	716, 1037
BseSI	GKGCMC	2 cut(s)	1151, 1999
BseYI	CCCAGC	1 cut(s)	1486
Bsh1236I	CGCG	2 cut(s)	627, 1117
BshFI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1640, 2064
BshNI	GGYRCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	1896
BsiHKCI	CYCGRG	2 cut(s)	187, 1965
BsiSI	CCGG	5 cut(s)	850, 1424, 1641, 2042, 2135
BslFI	GGGAC	7 cut(s)	74, 335, 505, 600, 796, 832, 1916
BslI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
BsmAI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1982
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	7 cut(s)	74, 335, 505, 600, 796, 832, 1916
BsmI	GAATGC	2 cut(s)	597, 1870
BsnI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1640, 2064
Bso31I	GGTCTC	1 cut(s)	1982
BsoBI	CYCGRG	2 cut(s)	187, 1965
Bsp119I	TTCGAA	1 cut(s)	1530
Bsp120I	GGGCCC	1 cut(s)	1147
Bsp1286I	GDGCHC	4 cut(s)	280, 1151, 1896, 1999
Bsp13I	TCCGGA	1 cut(s)	2134
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
Bsp1720I	GCTNAGC	1 cut(s)	1678
BspACI	CCGC	9 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233, 1949
BspANI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1640, 2064
BspCNI	CTCAG	4 cut(s)	358, 550, 1252, 1691
BspEI	TCCGGA	1 cut(s)	2134
BspFNI	CGCG	2 cut(s)	627, 1117
BspHI	TCATGA	2 cut(s)	916, 2124
BspLI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BspMAI	CTGCAG	3 cut(s)	130, 1495, 2203
BspMI	ACCTGC	2 cut(s)	133, 1058
BspOI	GCTAGC	1 cut(s)	1247
BspPI	GGATC	4 cut(s)	400, 881, 1199, 1816
BspT104I	TTCGAA	1 cut(s)	1530
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	1982
BsrDI	GCAATG	3 cut(s)	1482, 1983, 2103
BsrFI	RCCGGY	2 cut(s)	1423, 1640
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	8 cut(s)	424, 826, 1208, 1225, 1463, 1885, 1928, 2074
BssAI	RCCGGY	2 cut(s)	1423, 1640
BssECI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1666, 1831, 2208
BssMI	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	1817
BssT1I	CCWWGG	4 cut(s)	1195, 1666, 1831, 2208
Bst2BI	CACGAG	1 cut(s)	1817
Bst2UI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
Bst4CI	ACNGT	3 cut(s)	544, 570, 1190
Bst6I	CTCTTC	3 cut(s)	241, 908, 1005
BstACI	GRCGYC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	1530
BstC8I	GCNNGC	6 cut(s)	878, 1245, 1548, 1638, 2150, 2196
BstDEI	CTNAG	6 cut(s)	254, 366, 558, 1260, 1673, 1678
BstDSI	CCRYGG	2 cut(s)	566, 1159
BstEII	GGTNACC	1 cut(s)	737
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	8 cut(s)	62, 322, 438, 1024, 1058, 1282, 1395, 1459
BstFNI	CGCG	2 cut(s)	627, 1117
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 627
BstKTI	GATC	7 cut(s)	395, 889, 1113, 1207, 1444, 1525, 1824
BstMAI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1982
BstMBI	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
BstNI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BstNSI	RCATGY	5 cut(s)	186, 979, 1550, 2086, 2152
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	8 cut(s)	848, 1001, 1272, 1330, 1363, 1398, 1534, 2040
BstSFI	CTRYAG	5 cut(s)	126, 195, 1491, 2091, 2199
BstSLI	GKGCMC	2 cut(s)	1151, 1999
BstUI	CGCG	2 cut(s)	627, 1117
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	1441
BstYI	RGATCY	1 cut(s)	1441
BsuRI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1640, 2064
BtgI	CCRYGG	2 cut(s)	566, 1159
BtgZI	GCGATG	1 cut(s)	1062
BtsCI	GGATG	8 cut(s)	62, 322, 438, 1024, 1058, 1282, 1395, 1459
BtsI	GCAGTG	2 cut(s)	135, 916
BtsIMutI	CAGTG	5 cut(s)	135, 417, 916, 988, 1218
BveI	ACCTGC	2 cut(s)	133, 1058
Cac8I	GCNNGC	6 cut(s)	878, 1245, 1548, 1638, 2150, 2196
CaiI	CAGNNNCTG	2 cut(s)	622, 1685
CciI	TCATGA	2 cut(s)	916, 2124
CfoI	GCGC	2 cut(s)	11, 627
Cfr10I	RCCGGY	2 cut(s)	1423, 1640
Cfr13I	GGNCC	6 cut(s)	716, 1147, 1148, 1469, 1776, 1925
CseI	GACGC	1 cut(s)	1106
CsiI	ACCWGGT	1 cut(s)	1363
Csp6I	GTAC	6 cut(s)	91, 706, 1376, 1509, 1970, 2086
CviQI	GTAC	6 cut(s)	91, 706, 1376, 1509, 1970, 2086
DdeI	CTNAG	6 cut(s)	254, 366, 558, 1260, 1673, 1678
DpnI	GATC	7 cut(s)	394, 888, 1112, 1206, 1443, 1524, 1823
DpnII	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
DraI	TTTAAA	1 cut(s)	1300
DrdI	GACNNNNNNGTC	1 cut(s)	2024
DseDI	GACNNNNNNGTC	1 cut(s)	2024
EaeI	YGGCCR	1 cut(s)	1270
Eam1104I	CTCTTC	3 cut(s)	241, 908, 1005
EarI	CTCTTC	3 cut(s)	241, 908, 1005
Eco130I	CCWWGG	4 cut(s)	1195, 1666, 1831, 2208
Eco24I	GRGCYC	2 cut(s)	280, 1151
Eco31I	GGTCTC	1 cut(s)	1982
Eco32I	GATATC	1 cut(s)	1762
Eco47I	GGWCC	4 cut(s)	716, 1469, 1776, 1925
Eco57I	CTGAAG	1 cut(s)	1565
Eco88I	CYCGRG	2 cut(s)	187, 1965
Eco91I	GGTNACC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	1776
EcoO65I	GGTNACC	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	1569
EcoRII	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
EcoRV	GATATC	1 cut(s)	1762
EcoT14I	CCWWGG	4 cut(s)	1195, 1666, 1831, 2208
EcoT22I	ATGCAT	1 cut(s)	1060
EcoT38I	GRGCYC	2 cut(s)	280, 1151
ErhI	CCWWGG	4 cut(s)	1195, 1666, 1831, 2208
Esp3I	CGTCTC	1 cut(s)	646
FaqI	GGGAC	7 cut(s)	74, 335, 505, 600, 796, 832, 1916
FauI	CCCGC	2 cut(s)	360, 869
FokI	GGATG	8 cut(s)	69, 329, 445, 1031, 1045, 1289, 1382, 1446
FriOI	GRGCYC	2 cut(s)	280, 1151
FspBI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1731, 1826
GlaI	GCGC	2 cut(s)	10, 626
GsaI	CCCAGC	1 cut(s)	1490
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	213, 840, 1149, 1272, 1640, 2064
HapII	CCGG	5 cut(s)	850, 1424, 1641, 2042, 2135
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	2 cut(s)	11, 627
Hin1I	GRCGYC	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	9, 625
HinP1I	GCGC	2 cut(s)	9, 625
HincII	GTYRAC	2 cut(s)	122, 757
HindII	GTYRAC	2 cut(s)	122, 757
HinfI	GANTC	6 cut(s)	118, 560, 619, 994, 1082, 1539
HpaII	CCGG	5 cut(s)	850, 1424, 1641, 2042, 2135
HphI	GGTGA	9 cut(s)	659, 698, 749, 1382, 1426, 1475, 1780, 2020, 2158
Hpy166II	GTNNAC	4 cut(s)	122, 417, 757, 1483
Hpy188I	TCNGA	7 cut(s)	367, 1063, 1087, 1122, 1261, 1568, 1925
Hpy188III	TCNNGA	9 cut(s)	189, 719, 917, 1437, 1631, 1804, 1819, 2125, 2135
Hpy8I	GTNNAC	4 cut(s)	122, 417, 757, 1483
Hpy99I	CGWCG	2 cut(s)	1344, 2063
HpyAV	CCTTC	6 cut(s)	128, 305, 416, 1037, 1316, 1767
HpyCH4III	ACNGT	3 cut(s)	544, 570, 1190
HpyCH4IV	ACGT	1 cut(s)	639
HpyF3I	CTNAG	6 cut(s)	254, 366, 558, 1260, 1673, 1678
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	639
HspAI	GCGC	2 cut(s)	9, 625
Kpn2I	TCCGGA	1 cut(s)	2134
Kzo9I	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
LmnI	GCTCC	6 cut(s)	191, 283, 379, 858, 930, 1518
LweI	GCATC	6 cut(s)	486, 1054, 1067, 1697, 1713, 2109
MabI	ACCWGGT	1 cut(s)	1363
MaeI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1731, 1826
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	7 cut(s)	153, 175, 340, 737, 817, 895, 2026
MalI	GATC	7 cut(s)	394, 888, 1112, 1206, 1443, 1524, 1823
MboI	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
MboII	GAAGA	6 cut(s)	228, 647, 895, 1022, 1948, 2167
MflI	RGATCY	1 cut(s)	1441
MhlI	GDGCHC	4 cut(s)	280, 1151, 1896, 1999
MlsI	TGGCCA	1 cut(s)	1272
MluCI	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1569, 1626, 1846, 2215
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	4 cut(s)	127, 569, 628, 1548
MmeI	TCCRAC	5 cut(s)	467, 1447, 1474, 1546, 1627
Mox20I	TGGCCA	1 cut(s)	1272
Mph1103I	ATGCAT	1 cut(s)	1060
MroI	TCCGGA	1 cut(s)	2134
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	1 cut(s)	1299
MslI	CAYNNNNRTG	1 cut(s)	1252
Msp20I	TGGCCA	1 cut(s)	1272
MspA1I	CMGCKG	2 cut(s)	1490, 2204
MspI	CCGG	5 cut(s)	850, 1424, 1641, 2042, 2135
MspR9I	CCNGG	8 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536, 2042
Mva1269I	GAATGC	2 cut(s)	597, 1870
MvaI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
MvnI	CGCG	2 cut(s)	627, 1117
NciI	CCSGG	2 cut(s)	850, 2042
NdeII	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
NheI	GCTAGC	1 cut(s)	1243
NlaIV	GGNNCC	4 cut(s)	279, 480, 926, 1149
NmuCI	GTSAC	5 cut(s)	153, 737, 817, 895, 2026
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	5 cut(s)	186, 979, 1550, 2086, 2152
NspV	TTCGAA	1 cut(s)	1530
PaeI	GCATGC	2 cut(s)	1550, 2152
PagI	TCATGA	2 cut(s)	916, 2124
PaqCI	CACCTGC	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	2 cut(s)	597, 1870
PfeI	GAWTC	2 cut(s)	994, 1082
PflMI	CCANNNNNTGG	1 cut(s)	968
PleI	GAGTC	4 cut(s)	126, 568, 627, 1547
PpsI	GAGTC	4 cut(s)	126, 568, 627, 1547
PpuMI	RGGWCCY	1 cut(s)	1776
PsiI	TTATAA	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	1776
Psp6I	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
PspEI	GGTNACC	1 cut(s)	737
PspFI	CCCAGC	1 cut(s)	1486
PspGI	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
PspN4I	GGNNCC	4 cut(s)	279, 480, 926, 1149
PspOMI	GGGCCC	1 cut(s)	1147
PspPI	GGNCC	6 cut(s)	716, 1147, 1148, 1469, 1776, 1925
PspPPI	RGGWCCY	1 cut(s)	1776
PstI	CTGCAG	3 cut(s)	130, 1495, 2203
PstNI	CAGNNNCTG	2 cut(s)	622, 1685
PsuI	RGATCY	1 cut(s)	1441
PvuII	CAGCTG	2 cut(s)	1490, 2204
RsaI	GTAC	6 cut(s)	92, 707, 1377, 1510, 1971, 2087
RsaNI	GTAC	6 cut(s)	91, 706, 1376, 1509, 1970, 2086
RseI	CAYNNNNRTG	1 cut(s)	1252
SaqAI	TTAA	1 cut(s)	1299
Sau3AI	GATC	7 cut(s)	392, 886, 1110, 1204, 1441, 1522, 1821
Sau96I	GGNCC	6 cut(s)	716, 1147, 1148, 1469, 1776, 1925
SchI	GAGTC	4 cut(s)	127, 569, 628, 1548
ScrFI	CCNGG	8 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536, 2042
SduI	GDGCHC	4 cut(s)	280, 1151, 1896, 1999
SexAI	ACCWGGT	1 cut(s)	1363
SfaNI	GCATC	6 cut(s)	486, 1054, 1067, 1697, 1713, 2109
SfcI	CTRYAG	5 cut(s)	126, 195, 1491, 2091, 2199
SfuI	TTCGAA	1 cut(s)	1530
SinI	GGWCC	4 cut(s)	716, 1469, 1776, 1925
SmiMI	CAYNNNNRTG	1 cut(s)	1252
SmlI	CTYRAG	2 cut(s)	596, 1631
SmoI	CTYRAG	2 cut(s)	596, 1631
SphI	GCATGC	2 cut(s)	1550, 2152
Sse9I	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1569, 1626, 1846, 2215
SsiI	CCGC	9 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233, 1949
SspMI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1731, 1826
StyD4I	CCNGG	8 cut(s)	848, 1001, 1272, 1330, 1363, 1398, 1534, 2040
StyI	CCWWGG	4 cut(s)	1195, 1666, 1831, 2208
TaaI	ACNGT	3 cut(s)	544, 570, 1190
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	699, 1530
TasI	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1569, 1626, 1846, 2215
TatI	WGTACW	2 cut(s)	90, 705
TauI	GCSGC	2 cut(s)	216, 630
TfiI	GAWTC	2 cut(s)	994, 1082
Tru1I	TTAA	1 cut(s)	1299
Tru9I	TTAA	1 cut(s)	1299
TscAI	CASTG	5 cut(s)	135, 424, 916, 988, 1225
TseFI	GTSAC	5 cut(s)	153, 737, 817, 895, 2026
Tsp45I	GTSAC	5 cut(s)	153, 737, 817, 895, 2026
TspDTI	ATGAA	5 cut(s)	905, 933, 1384, 2113, 2141
TspGWI	ACGGA	5 cut(s)	73, 488, 507, 1176, 2047
TspRI	CASTG	5 cut(s)	135, 424, 916, 988, 1225
Van91I	CCANNNNNTGG	1 cut(s)	968
VpaK11BI	GGWCC	4 cut(s)	716, 1469, 1776, 1925
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	4 cut(s)	1305, 1569, 1626, 1846
XceI	RCATGY	5 cut(s)	186, 979, 1550, 2086, 2152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1753
XmaJI	CCTAGG	1 cut(s)	1195
XspI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1731, 1826
ZraI	GACGTC	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.