Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001036

Physical Location & Seq

Genomic Coordinates Forward (+)

19436290 .. 19438824

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTAAGACTGTTTGCTTGCCAACTCTGTTATTTCCAGCAACACATATATCCAATTTGAAGAAGACTGTTCTATTAAATAGGGATTTGTGGATGGACACCAAACAGTTATTCAATCCTCTCTTTTTCAAAGAGATGAGACACTTTGGGAATTTTTTTCGAGCATTTCGAAGCACATTTTTCTCATTTTCATTCTTGGAATGGGAGGCGTTGGTAAGAGAAACAACATGCAAGTTCACACAGTTTTGGTTGTGTGAGATAACAAATATTACGCAACCAATGAGAGGGCGGGTGGGAGACTCAACAGACCTAGTCAAATGGTGTCTTCCACAACTACACATCAAAATGCAACAAATGGACATTTCAGAAATTGAGCCTGGTATAAGTATCCAGCTGGAGAAAAGAGGCAAGAAAGAAAATGAAGGACATGGTGAAGAAAATGAAGAACAAGGTGTAGAAAAACCTACCCAAGGACAAAACAAGAGAATTAATGAAACAATTATGAGAGGAAAGAACAAAGAAGATAGCTTTATGATGACAATGTTAAGGAGTTCCCTTCTGATGGATATTTTAAACCTGCTCAAAGCTTGCAAGCAATTTCACAAGATCAGTGCTTTAACAGATAATCTTATTCCAGATATTATGGAAAATCCAAGAGGTCAGATACTGTTATGGAAGAATCCACACAAGACCTCCAGTTTGCTCCTTTCTGATATACACACAAGGGAGATTCATAATCCTTTCCTTTCACCTGATCCCTCTGATTCTATGGCATCCATAGAGATCTCGAAGGTTTGTGAACTCTTCTACACCAAGGAGAGGACAGTCTACACTCGGCTCTTGTGGCTGAAATGCTTAGCCGAAAACGTGCAGAAGCTCGTCGGCTTCTGGGCTTGGGTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

301

Amino Acids

35.17

Weight (kDa)

8.61

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300
fragaria_vesca	FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950
malus_domestica	MD05G1139800.v1.1 MD06G1005100.v1.1 MD10G1142100.v1.1
prunus_persica	Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1
pyrus_communis	pycom05g13500 pycom10g12180
rosa_chinensis	RchiOBHm_Chr6g0280981 RchiOBHm_Chr7g0216501
rosa_laevigata	RLG00000002567 RLG00000002578 RLG00000013010
rosa_multiflora	Rmu_sc0000692.1_g000001 Rmu_sc0030247.1_g000002 Rmu_sc0030424.1_g000003 Rmu_sc0034915.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243170 Rroxscaffold_7G00187430
rosa_rugosa	Rorug06G0137300 Rorug06G0137400 Rorug06G0137500 Rorug07G0160700
rosa_samantha	Rh6AG249900 Rh6CG252500 Rh7BG291500 Rh7DG301100
rosa_wichuraiana	Rw6G021600 Rw7G025360 Rw7G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	151
AfiI	CCNNNNNNNGG	4 cut(s)	284, 470, 562, 819
AgsI	TTSAA	3 cut(s)	61, 115, 130
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	394, 528, 587, 877
AluI	AGCT	4 cut(s)	394, 528, 587, 877
Alw26I	GTCTC	2 cut(s)	133, 291
AlwI	GGATC	1 cut(s)	749
AlwNI	CAGNNNCTG	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
AseI	ATTAAT	1 cut(s)	489
AsuHPI	GGTGA	2 cut(s)	443, 741
AsuII	TTCGAA	1 cut(s)	169
BbsI	GAAGAC	2 cut(s)	71, 317
BccI	CCATC	2 cut(s)	88, 556
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	133, 291
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	783
BlpI	GCTNAGC	1 cut(s)	856
Bme1390I	CCNGG	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	2 cut(s)	71, 317
BpmI	CTGGAG	2 cut(s)	416, 679
Bpu1102I	GCTNAGC	1 cut(s)	856
Bpu14I	TTCGAA	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	469, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 470, 562, 819
Bse1I	ACTGG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	469, 813
BseGI	GGATG	2 cut(s)	99, 773
BseLI	CCNNNNNNNGG	4 cut(s)	284, 470, 562, 819
BseNI	ACTGG	1 cut(s)	696
BsgI	GTGCAG	1 cut(s)	890
BslI	CCNNNNNNNGG	4 cut(s)	284, 470, 562, 819
BsmAI	GTCTC	2 cut(s)	133, 291
Bsp119I	TTCGAA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	606, 754, 783
Bsp1720I	GCTNAGC	1 cut(s)	856
BspACI	CCGC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	749
BspT104I	TTCGAA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	2 cut(s)	469, 813
BssMI	GATC	3 cut(s)	606, 754, 783
BssT1I	CCWWGG	2 cut(s)	469, 813
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	6 cut(s)	13, 70, 108, 243, 669, 826
Bst6I	CTCTTC	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	20, 589, 593
BstDEI	CTNAG	2 cut(s)	6, 856
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	99, 773
BstKTI	GATC	3 cut(s)	609, 757, 786
BstMAI	GTCTC	2 cut(s)	133, 291
BstMBI	GATC	3 cut(s)	606, 754, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	71, 317
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	99, 773
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	585
Cac8I	GCNNGC	3 cut(s)	20, 589, 593
CaiI	CAGNNNCTG	1 cut(s)	667
CviAII	CATG	2 cut(s)	228, 428
DdeI	CTNAG	2 cut(s)	6, 856
DpnI	GATC	3 cut(s)	608, 756, 785
DpnII	GATC	3 cut(s)	606, 754, 783
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Eco130I	CCWWGG	2 cut(s)	469, 813
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	469, 813
ErhI	CCWWGG	2 cut(s)	469, 813
FaeI	CATG	2 cut(s)	231, 431
FatI	CATG	2 cut(s)	227, 427
FauI	CCCGC	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	828
FokI	GGATG	2 cut(s)	106, 760
FspBI	CTAG	1 cut(s)	311
GsuI	CTGGAG	2 cut(s)	416, 679
Hin1II	CATG	2 cut(s)	231, 431
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	299, 679, 730, 764
HphI	GGTGA	2 cut(s)	443, 741
Hpy166II	GTNNAC	3 cut(s)	237, 800, 829
Hpy188I	TCNGA	5 cut(s)	367, 561, 663, 712, 763
Hpy188III	TCNNGA	2 cut(s)	635, 787
Hpy8I	GTNNAC	3 cut(s)	237, 800, 829
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	3 cut(s)	416, 566, 784
HpyCH4III	ACNGT	6 cut(s)	13, 70, 108, 243, 669, 826
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	4 cut(s)	231, 349, 591, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	2 cut(s)	6, 856
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	2 cut(s)	231, 431
Kzo9I	GATC	3 cut(s)	606, 754, 783
LmnI	GCTCC	1 cut(s)	708
LweI	GCATC	1 cut(s)	782
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	867
MalI	GATC	3 cut(s)	608, 756, 785
MboI	GATC	3 cut(s)	606, 754, 783
MboII	GAAGA	8 cut(s)	73, 76, 317, 446, 455, 533, 688, 796
MflI	RGATCY	1 cut(s)	783
MluCI	AATT	6 cut(s)	55, 151, 369, 486, 498, 596
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	129, 199, 278, 398, 500, 650, 703, 769, 813
MseI	TTAA	5 cut(s)	77, 489, 545, 572, 617
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	844
NdeII	GATC	3 cut(s)	606, 754, 783
NlaIII	CATG	2 cut(s)	231, 431
NmeAIII	GCCGAG	1 cut(s)	814
NspI	RCATGY	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	679, 730, 764
PflFI	GACNNNGTC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	5 cut(s)	77, 489, 545, 572, 617
Sau3AI	GATC	3 cut(s)	606, 754, 783
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	782
SfuI	TTCGAA	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	6 cut(s)	55, 151, 369, 486, 498, 596
SsiI	CCGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	469, 813
TaaI	ACNGT	6 cut(s)	13, 70, 108, 243, 669, 826
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	3 cut(s)	160, 169, 788
TasI	AATT	6 cut(s)	55, 151, 369, 486, 498, 596
TfiI	GAWTC	3 cut(s)	679, 730, 764
Tru1I	TTAA	5 cut(s)	77, 489, 545, 572, 617
Tru9I	TTAA	5 cut(s)	77, 489, 545, 572, 617
TscAI	CASTG	1 cut(s)	616
TspDTI	ATGAA	5 cut(s)	180, 435, 456, 507, 722
TspRI	CASTG	1 cut(s)	616
Tth111I	GACNNNGTC	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.