Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001036

Physical Location & Seq

Genomic Coordinates Forward (+)

19448653 .. 19449690

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGACGAAAGGGGTAGAGCATTCTTCAACAATGGAAGCATCTTATTAGAGGATCTCATTGCTTCTTGTGATGGAAAATCTAATCCTATTCGCAATTACTCTGCTTCTGAGCTCATCAGGGCCACCAACAATTTTGATCCTTCCTGCATCATACAAAATTGTACGCCTACTGAGGCTAGTCAATTTCATCGTTTTATACATGTTTACCATGGTTACAAAGTGTTCAAGGGTTTTCTAGACGATCGATATATCATTGTTAAGAAGTTCATGGGGACCGGGGATGAAACTAGGTCCCTGGCTATTCGTGACATTATCGTTTCAATGCAAATGAGCAACCATAAGAATGTCTTGAAGCTCTTGGGGTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAATATGCAACAAAAGGAGTTGTCACTTATCAAGGAGGTTTCGGGGCCAATGAGTCCTTGCCCTGGAAAGTTAGGTTGCGTATTGCAAAGCAGCTTGCAAATGCACTTACATATCTTCATACCGCCTTTCCGAGGCCTATCATTCACAGGGACCTGAAACCCAACTGCATTTTTTTGGATGAGGACTATGTCCCCAAACTCTGCAACTTCTCACTGTCCATAACCATACCTCCTAAGCAATCGTATGCTGAAGATAACCCGAAAGGGACATTTGGTTATGTTGATCCTACCTACATGAGGTCTGGTTACATTTCGGAAAAAGGTGATGTTTACAGCTTTGGTGTTCTATTACTTGTGTTCTTGACAGGACAAGAAGCTTTGATTAGATATGAAGAGGGAGGAGAGTATCAGTCAATTATTCCATATGTGAAATCTCATGCTTGTGATGGCCAGATTGAGACAATAGTGGATCCTCAAGTCCTTAGAGAGGCCAAGGGAGATAAACACACACAACAATACTTGCATGATTTCCTTGCACTGGCATTGTTATGCACCAGTGACAGTAGTGAAGCACGGCCTGATATGATCGATGTGGCGAAAGAACTCGTACGAATTGAGAAGTGTTTATTGCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

345

Amino Acids

38.94

Weight (kDa)

6.21

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	65 - 276	1.5e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	74 - 274	6.3e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300 AT4G35300
fragaria_vesca	FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_2g16850 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950 FvH4_5g25950
malus_domestica	MD05G1139800.v1.1 MD06G1005100.v1.1 MD10G1142100.v1.1
prunus_persica	Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.5G006300_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1 Prupe.8G180600_v2.0.a1
pyrus_communis	pycom05g13500 pycom10g12180
rosa_chinensis	RchiOBHm_Chr6g0280981 RchiOBHm_Chr7g0216501
rosa_laevigata	RLG00000002567 RLG00000002578 RLG00000013010
rosa_multiflora	Rmu_sc0000692.1_g000001 Rmu_sc0030247.1_g000002 Rmu_sc0030424.1_g000003 Rmu_sc0034915.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243170 Rroxscaffold_7G00187430
rosa_rugosa	Rorug06G0137300 Rorug06G0137400 Rorug06G0137500 Rorug07G0160700
rosa_samantha	Rh6AG249900 Rh6CG252500 Rh7BG291500 Rh7DG301100
rosa_wichuraiana	Rw6G021600 Rw7G025360 Rw7G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	5 cut(s)	60, 131, 677, 863, 876
AcoI	YGGCCR	1 cut(s)	847
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	163, 1008
AfiI	CCNNNNNNNGG	5 cut(s)	462, 531, 696, 886, 937
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	28, 226, 321, 352
AjnI	CCWGG	2 cut(s)	294, 461
AluBI	AGCT	6 cut(s)	112, 355, 389, 493, 735, 776
AluI	AGCT	6 cut(s)	112, 355, 389, 493, 735, 776
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	5 cut(s)	60, 131, 677, 863, 876
AoxI	GGCC	6 cut(s)	120, 444, 533, 847, 888, 974
ApeKI	GCWGC	1 cut(s)	490
AspS9I	GGNCC	5 cut(s)	120, 273, 291, 444, 550
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	3 cut(s)	273, 291, 550
BalI	TGGCCA	1 cut(s)	849
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	65, 839
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	2 cut(s)	296, 463
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	4 cut(s)	177, 236, 288, 1036
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	277, 296, 463
Bme18I	GGWCC	3 cut(s)	273, 291, 550
BmgT120I	GGNCC	5 cut(s)	120, 273, 291, 444, 550
BmiI	GGNNCC	5 cut(s)	274, 293, 445, 551, 870
BmrFI	CCNGG	3 cut(s)	277, 296, 463
BmsI	GCATC	2 cut(s)	48, 156
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	858
BpuMI	CCSGG	1 cut(s)	277
Bsa29I	ATCGAT	2 cut(s)	244, 987
BsaJI	CCNNGG	6 cut(s)	208, 276, 294, 461, 530, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	5 cut(s)	462, 531, 696, 886, 937
Bse1I	ACTGG	2 cut(s)	942, 954
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	296, 463
BseCI	ATCGAT	2 cut(s)	244, 987
BseDI	CCNNGG	6 cut(s)	208, 276, 294, 461, 530, 891
BseGI	GGATG	2 cut(s)	286, 583
BseLI	CCNNNNNNNGG	5 cut(s)	462, 531, 696, 886, 937
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	99, 162
BseNI	ACTGG	2 cut(s)	942, 954
BseRI	GAGGAG	1 cut(s)	813
BseXI	GCAGC	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	6 cut(s)	122, 446, 535, 849, 890, 976
BshVI	ATCGAT	2 cut(s)	244, 987
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	276
BsiWI	CGTACG	1 cut(s)	1006
BslFI	GGGAC	5 cut(s)	277, 286, 563, 575, 679
BslI	CCNNNNNNNGG	5 cut(s)	462, 531, 696, 886, 937
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	5 cut(s)	277, 286, 563, 575, 679
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	6 cut(s)	122, 446, 535, 849, 890, 976
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	6 cut(s)	122, 446, 535, 849, 890, 976
BspCNI	CTCAG	2 cut(s)	100, 163
BspDI	ATCGAT	2 cut(s)	244, 987
BspLI	GGNNCC	5 cut(s)	274, 293, 445, 551, 870
BspPI	GGATC	5 cut(s)	60, 131, 677, 863, 876
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	942, 954
BssECI	CCNNGG	6 cut(s)	208, 276, 294, 461, 530, 891
BssMI	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
BssT1I	CCWWGG	2 cut(s)	208, 891
Bst2UI	CCWGG	2 cut(s)	296, 463
Bst4CI	ACNGT	2 cut(s)	615, 962
Bst6I	CTCTTC	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	108, 171, 633, 881
BstDSI	CCRYGG	1 cut(s)	208
BstENI	CCTNNNNNAGG	3 cut(s)	529, 694, 884
BstF5I	GGATG	2 cut(s)	286, 583
BstKTI	GATC	6 cut(s)	55, 139, 244, 685, 871, 987
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
BstMCI	CGRYCG	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	296, 463
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	275, 294, 461
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	52, 868
BstYI	RGATCY	2 cut(s)	52, 868
Bsu15I	ATCGAT	2 cut(s)	244, 987
BsuRI	GGCC	6 cut(s)	122, 446, 535, 849, 890, 976
BsuTUI	ATCGAT	2 cut(s)	244, 987
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	286, 583
BtsIMutI	CAGTG	3 cut(s)	611, 935, 961
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	5 cut(s)	120, 273, 291, 444, 550
ClaI	ATCGAT	2 cut(s)	244, 987
Csp6I	GTAC	2 cut(s)	162, 1007
CviAII	CATG	7 cut(s)	200, 209, 268, 398, 694, 836, 923
CviQI	GTAC	2 cut(s)	162, 1007
DdeI	CTNAG	4 cut(s)	108, 171, 633, 881
DpnI	GATC	6 cut(s)	54, 138, 243, 684, 870, 986
DpnII	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
EaeI	YGGCCR	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	208, 891
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	3 cut(s)	273, 291, 550
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	3 cut(s)	529, 694, 884
EcoO109I	RGGNCCY	2 cut(s)	291, 550
EcoRII	CCWGG	2 cut(s)	294, 461
EcoT14I	CCWWGG	2 cut(s)	208, 891
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	208, 891
FaeI	CATG	7 cut(s)	203, 212, 271, 401, 697, 839, 926
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	5 cut(s)	277, 286, 563, 575, 679
FatI	CATG	7 cut(s)	199, 208, 267, 397, 693, 835, 922
FauNDI	CATATG	1 cut(s)	823
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	2 cut(s)	293, 590
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	4 cut(s)	177, 236, 288, 1036
GluI	GCNGC	1 cut(s)	491
HaeIII	GGCC	6 cut(s)	122, 446, 535, 849, 890, 976
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	7 cut(s)	203, 212, 271, 401, 697, 839, 926
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	205, 730
Hpy188I	TCNGA	3 cut(s)	109, 531, 715
Hpy188III	TCNNGA	4 cut(s)	236, 305, 349, 760
Hpy8I	GTNNAC	2 cut(s)	205, 730
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	615, 962
HpyF3I	CTNAG	4 cut(s)	108, 171, 633, 881
Hsp92II	CATG	7 cut(s)	203, 212, 271, 401, 697, 839, 926
Kzo9I	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	48, 156
MaeI	CTAG	4 cut(s)	177, 236, 288, 1036
MaeIII	GTNAC	5 cut(s)	212, 305, 421, 704, 956
MalI	GATC	6 cut(s)	54, 138, 243, 684, 870, 986
MboI	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
MboII	GAAGA	4 cut(s)	16, 506, 662, 803
MflI	RGATCY	2 cut(s)	52, 868
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	849
MluCI	AATT	6 cut(s)	94, 130, 157, 182, 813, 1011
MluNI	TGGCCA	1 cut(s)	849
MlyI	GAGTC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	849
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	4 cut(s)	342, 402, 840, 946
Msp20I	TGGCCA	1 cut(s)	849
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	277, 296, 463
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	296, 463
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
NlaIII	CATG	7 cut(s)	203, 212, 271, 401, 697, 839, 926
NlaIV	GGNNCC	5 cut(s)	274, 293, 445, 551, 870
NmuCI	GTSAC	3 cut(s)	305, 421, 956
NspI	RCATGY	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	535
PciI	ACATGT	1 cut(s)	199
PctI	GAATGC	1 cut(s)	20
Pfl23II	CGTACG	1 cut(s)	1006
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	492
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	291, 550
PscI	ACATGT	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	2 cut(s)	291, 550
Psp6I	CCWGG	2 cut(s)	294, 461
PspGI	CCWGG	2 cut(s)	294, 461
PspLI	CGTACG	1 cut(s)	1006
PspN4I	GGNNCC	5 cut(s)	274, 293, 445, 551, 870
PspPI	GGNCC	5 cut(s)	120, 273, 291, 444, 550
PspPPI	RGGWCCY	2 cut(s)	291, 550
PsuI	RGATCY	2 cut(s)	52, 868
PsyI	GACNNNGTC	1 cut(s)	587
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	163, 1008
RsaNI	GTAC	2 cut(s)	162, 1007
RseI	CAYNNNNRTG	4 cut(s)	342, 402, 840, 946
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	6 cut(s)	52, 136, 241, 682, 868, 984
Sau96I	GGNCC	5 cut(s)	120, 273, 291, 444, 550
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	277, 296, 463
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	48, 156
SinI	GGWCC	3 cut(s)	273, 291, 550
SmiMI	CAYNNNNRTG	4 cut(s)	342, 402, 840, 946
SmlI	CTYRAG	1 cut(s)	873
SmoI	CTYRAG	1 cut(s)	873
Sse9I	AATT	6 cut(s)	94, 130, 157, 182, 813, 1011
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	4 cut(s)	177, 236, 288, 1036
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	275, 294, 461
StyI	CCWWGG	2 cut(s)	208, 891
TaaI	ACNGT	2 cut(s)	615, 962
TaqI	TCGA	2 cut(s)	244, 987
TasI	AATT	6 cut(s)	94, 130, 157, 182, 813, 1011
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	618, 942, 961
TseFI	GTSAC	3 cut(s)	305, 421, 956
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	3 cut(s)	305, 421, 956
TspDTI	ATGAA	6 cut(s)	176, 256, 297, 414, 506, 804
TspRI	CASTG	3 cut(s)	618, 942, 961
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	3 cut(s)	273, 291, 550
XagI	CCTNNNNNAGG	3 cut(s)	529, 694, 884
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	4 cut(s)	177, 236, 288, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.