Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043047.1

Orthogroup ID

OG0007824

Physical Location & Seq

Genomic Coordinates Forward (+)

606 .. 980

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043047.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggtagtgtcgattgccttacatggtgcttttagcactagtagcctgcaaagaggtaggaatagcttaagagctgaaagtattttcttctttgaactagagaggcaaagtgagatggcgcctggcagtttaaagagcattttgactgcggcggttaatactggggtgactgaggctagggcaaggatattcgggcatgtgcttaacccgacaggcctgaagtctgcgcataagattttgcgcaagaagctgattggggagaaagttgcccagtggtacccacacgacatcaggaaagatgacccccttatcatggaagctgaggaaaaagagtatgctttcttctccatcgatctcattcactctattgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S33

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

9.05

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44710
fragaria_vesca	FvH4_3g13100
malus_domestica	MD05G1245000.v1.1 MD10G1226300.v1.1
prunus_persica	Prupe.1G101300_v2.0.a1
pyrus_communis	pycom10g19020
rosa_chinensis	RchiOBHm_Chr3g0492041 RchiOBHm_Chr5g0021361
rosa_laevigata	RLG00000022798 RLG00000032606
rosa_multiflora	Rmu_sc0003392.1_g000005 Rmu_sc0005238.1_g000002 Rmu_sc0043047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057170 Rroxscaffold_6G00392610
rosa_rugosa	Rorug03G0251400
rosa_samantha	Rh3AG301600 Rh3DG336900 Rh5AG155700 Rh5BG155200 Rh5CG168900 Rh5DG155700
rosa_wichuraiana	Rw3G026620 Rw5G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	228, 242
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	2 cut(s)	118, 276
AciI	CCGC	2 cut(s)	149, 152
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflII	CTTAAG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	66, 74, 250, 320
AluI	AGCT	4 cut(s)	66, 74, 250, 320
AoxI	GGCC	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	276
AspLEI	GCGC	3 cut(s)	121, 229, 243
AsuHPI	GGTGA	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	118, 276
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbvCI	CCTCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	109, 356
BciT130I	CCWGG	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	4 cut(s)	39, 98, 177, 373
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	67
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	120, 278
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	2 cut(s)	171, 265
BmuI	ACTGGG	2 cut(s)	171, 265
Bpu10I	CCTNAGC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	166, 271
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	162, 312
BseNI	ACTGG	2 cut(s)	166, 271
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	2 cut(s)	118, 276
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	313
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	149, 152
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	163, 313
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	120, 278
BspT107I	GGYRCC	2 cut(s)	118, 276
BspTI	CTTAAG	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	166, 271
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	171, 321
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	3 cut(s)	121, 229, 243
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 247
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	3 cut(s)	121, 229, 243
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	23, 197, 313
CviJI	RGCY	7 cut(s)	45, 66, 74, 176, 216, 250, 320
CviKI_1	RGCY	7 cut(s)	45, 66, 74, 176, 216, 250, 320
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	171, 321
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DraI	TTTAAA	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaeI	CATG	3 cut(s)	26, 200, 316
FaiI	YATR	5 cut(s)	24, 198, 231, 314, 336
FatI	CATG	3 cut(s)	22, 196, 312
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	4 cut(s)	39, 98, 177, 373
FspI	TGCGCA	2 cut(s)	228, 242
GlaI	GCGC	3 cut(s)	120, 228, 242
GluI	GCNGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	3 cut(s)	121, 229, 243
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	26, 200, 316
Hin6I	GCGC	3 cut(s)	119, 227, 241
HinP1I	GCGC	3 cut(s)	119, 227, 241
HphI	GGTGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 247
HpyF3I	CTNAG	2 cut(s)	171, 321
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	26, 200, 316
HspAI	GCGC	3 cut(s)	119, 227, 241
KasI	GGCGCC	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	8 cut(s)	59, 108, 135, 147, 198, 230, 277, 284
MaeI	CTAG	4 cut(s)	39, 98, 177, 373
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	79, 334
Mly113I	GGCGCC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	47, 96, 166, 316
MseI	TTAA	4 cut(s)	68, 131, 156, 204
MspCI	CTTAAG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	42, 247
NarI	GGCGCC	1 cut(s)	119
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	26, 200, 316
NlaIV	GGNNCC	2 cut(s)	120, 278
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	2 cut(s)	228, 242
NspI	RCATGY	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	151
PluTI	GGCGCC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	120, 278
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	4 cut(s)	68, 131, 156, 204
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	5 cut(s)	58, 68, 76, 252, 322
SfoI	GGCGCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	149, 152
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	4 cut(s)	39, 98, 177, 373
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	2 cut(s)	11, 351
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	4 cut(s)	68, 131, 156, 204
Tru9I	TTAA	4 cut(s)	68, 131, 156, 204
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspRI	CASTG	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	67
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	4 cut(s)	39, 98, 177, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.