Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007824

Physical Location & Seq

Genomic Coordinates Reverse (-)

23690507 .. 23694013

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACATGAAGAAGATCTCCGTCGCCATCATTGTCATTGCAGCCTTCATGAGCCTCGTCGTGGCTGCAAAGGAGACAGGCAAGCCAGCAGCGGCCCCCAAGGCCAAGTCTCCAACAGCCTCATCTCCTAAGGAAGGAGGGGCTCATGCCCCTGCCCCATCAGGCGCCGTCCCCACTACCTTGTCCATTGTTGAATCTTTCTTCAGCACCTTCCTTGTGTCCGTCTTTACCTATTACATGCATTCTGGGATGTTTCTTTCGGCTTATCGAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCGACTATGATTCCCAGGACCCATGGAGAGGCCAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S33

Protein Analysis

118

Amino Acids

12.42

Weight (kDa)

9.3

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44710
fragaria_vesca	FvH4_3g13100
malus_domestica	MD05G1245000.v1.1 MD10G1226300.v1.1
prunus_persica	Prupe.1G101300_v2.0.a1
pyrus_communis	pycom10g19020
rosa_chinensis	RchiOBHm_Chr3g0492041 RchiOBHm_Chr5g0021361
rosa_laevigata	RLG00000022798 RLG00000032606
rosa_multiflora	Rmu_sc0003392.1_g000005 Rmu_sc0005238.1_g000002 Rmu_sc0043047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057170 Rroxscaffold_6G00392610
rosa_rugosa	Rorug03G0251400
rosa_samantha	Rh3AG301600 Rh3DG336900 Rh5AG155700 Rh5BG155200 Rh5CG168900 Rh5DG155700
rosa_wichuraiana	Rw3G026620 Rw5G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	61, 134, 343
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	68, 114, 264
AoxI	GGCC	3 cut(s)	93, 102, 345
ApeKI	GCWGC	3 cut(s)	41, 65, 89
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	94, 333
AvaII	GGWCC	1 cut(s)	333
AxyI	CCTNAGG	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	52, 53, 101
BccI	CCATC	2 cut(s)	35, 166
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	3 cut(s)	68, 114, 264
BfoI	RGCGCY	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	4 cut(s)	42, 66, 90, 93
BlsI	GCNGC	4 cut(s)	43, 67, 91, 94
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	94, 333
BmiI	GGNNCC	3 cut(s)	96, 166, 335
BmrFI	CCNGG	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	99, 329, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 134, 343
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	99, 329, 337
BseGI	GGATG	2 cut(s)	255, 295
BseLI	CCNNNNNNNGG	3 cut(s)	61, 134, 343
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	52, 53, 101
BshFI	GGCC	3 cut(s)	95, 104, 347
BshNI	GGYRCC	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	155, 295
BslI	CCNNNNNNNGG	3 cut(s)	61, 134, 343
BsmAI	GTCTC	3 cut(s)	68, 114, 264
BsmFI	GGGAC	2 cut(s)	155, 295
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	95, 104, 347
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	3 cut(s)	95, 104, 347
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	96, 166, 335
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	99, 329, 337
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	99, 337
Bst2UI	CCWGG	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	83, 87
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	255, 295
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	3 cut(s)	68, 114, 264
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	52, 53, 101
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	95, 104, 347
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	255, 295
Cac8I	GCNNGC	2 cut(s)	83, 87
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	94, 333
CviAII	CATG	5 cut(s)	7, 49, 146, 238, 338
DdeI	CTNAG	1 cut(s)	129
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	99, 337
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	2 cut(s)	99, 337
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	99, 337
FaeI	CATG	5 cut(s)	10, 52, 149, 241, 341
FaiI	YATR	6 cut(s)	8, 50, 147, 239, 323, 339
FaqI	GGGAC	2 cut(s)	155, 295
FatI	CATG	5 cut(s)	6, 48, 145, 237, 337
Fnu4HI	GCNGC	4 cut(s)	42, 66, 90, 93
FokI	GGATG	2 cut(s)	262, 302
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	42, 66, 90, 93
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	42, 66, 90, 93
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	95, 104, 347
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	10, 52, 149, 241, 341
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	194, 325
Hpy188III	TCNNGA	2 cut(s)	49, 269
Hpy99I	CGWCG	2 cut(s)	26, 62
HpyAV	CCTTC	3 cut(s)	55, 128, 220
HpyCH4V	TGCA	4 cut(s)	41, 68, 241, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	10, 52, 149, 241, 341
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	8 cut(s)	63, 99, 147, 165, 231, 264, 316, 343
Lsp1109I	GCAGC	3 cut(s)	52, 53, 101
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	22, 25, 193
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	65, 130, 131, 292, 337
Mph1103I	ATGCAT	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	101
NarI	GGCGCC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	5 cut(s)	10, 52, 149, 241, 341
NlaIV	GGNNCC	3 cut(s)	96, 166, 335
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	1 cut(s)	48
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	194, 325
PkrI	GCNGC	4 cut(s)	43, 67, 91, 94
PluTI	GGCGCC	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	96, 166, 335
PspPI	GGNCC	2 cut(s)	94, 333
PspPPI	RGGWCCY	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	15
SatI	GCNGC	4 cut(s)	42, 66, 90, 93
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	94, 333
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	182, 212, 233
SfiI	GGCCNNNNNGGCC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	333
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	92
SspDI	GGCGCC	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	99, 337
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	349
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	194, 325
TseI	GCWGC	3 cut(s)	41, 65, 89
TspDTI	ATGAA	2 cut(s)	23, 37
TspGWI	ACGGA	2 cut(s)	10, 211
VpaK11BI	GGWCC	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.