Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000008.1

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

146292 .. 149040

Gene Structure 2749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcgtgtgcaaaatttgtagaaactgctgaagcccatttccgcctcaacattgatccaaaatacaatgaccaacagctaagggcaactgttaatctgcccaagggcactggacaaactgttaaggtggctgttcttactcaaggtgaaaggtttgaggaggccaaaaacgctggagcagatttggttggtggagatgatttgatacagcagataaaagaaggattcatggaatttgacaagttaattgcttcaccagatatgatgcccaaggttgctagccttggaaagattctaggaccaagagggctcatgccaaatccaaaagctggtaccgtgactcctaatataccccaggccatagccgaattcaaacaagggaaagttgaatacagagctgacaaaaccgggatagttcacttacgctttggaagagccgactttcctgaagaagatcttcttgtaaacctgctcgccgcaattaaatcagtagaaacaaataagccaccaggtgcaaaaggtgtttactggaagagtgcacacatatgctcatcaatgggcccttcgattaagttaaacataagggagatgcttgatttcaagcttccagcaagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

206

Amino Acids

22.42

Weight (kDa)

8.78

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	4 - 188	3.5e-61	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	2 cut(s)	43, 477
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	14, 233, 368
AcuI	CTGAAG	2 cut(s)	51, 468
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	373, 389, 601
AjnI	CCWGG	2 cut(s)	354, 508
AluBI	AGCT	4 cut(s)	79, 329, 398, 604
AluI	AGCT	4 cut(s)	79, 329, 398, 604
Alw21I	GWGCWC	1 cut(s)	541
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	3 cut(s)	162, 357, 559
ApaI	GGGCCC	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	537
ApoI	RAATTY	3 cut(s)	14, 233, 368
Asp700I	GAANNNNTTC	1 cut(s)	456
Asp718I	GGTACC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	299, 559, 560
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	158, 246
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	3 cut(s)	110, 541, 563
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	312, 563
Bbv12I	GWGCWC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	356, 510
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	2 cut(s)	279, 296
BfuAI	ACCTGC	1 cut(s)	477
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	356, 409, 510
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	299, 559, 560
BmiI	GGNNCC	2 cut(s)	334, 561
BmrFI	CCNGG	3 cut(s)	356, 409, 510
BmsI	GCATC	2 cut(s)	255, 579
BmtI	GCTAGC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	409
BsaJI	CCNNGG	4 cut(s)	102, 270, 283, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	115, 533
BseBI	CCWGG	2 cut(s)	356, 510
BseDI	CCNNGG	4 cut(s)	102, 270, 283, 354
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	115, 533
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	3 cut(s)	110, 541, 563
BshFI	GGCC	3 cut(s)	164, 359, 561
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	3 cut(s)	164, 359, 561
Bsp120I	GGGCCC	1 cut(s)	559
Bsp1286I	GDGCHC	4 cut(s)	110, 312, 541, 563
Bsp143I	GATC	2 cut(s)	55, 454
BspACI	CCGC	2 cut(s)	43, 477
BspANI	GGCC	3 cut(s)	164, 359, 561
BspLI	GGNNCC	2 cut(s)	334, 561
BspMI	ACCTGC	1 cut(s)	477
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	115, 533
BssECI	CCNNGG	4 cut(s)	102, 270, 283, 354
BssMI	GATC	2 cut(s)	55, 454
BssT1I	CCWWGG	3 cut(s)	102, 270, 283
Bst2UI	CCWGG	2 cut(s)	356, 510
Bst4CI	ACNGT	3 cut(s)	91, 121, 337
Bst6I	CTCTTC	2 cut(s)	427, 527
BstC8I	GCNNGC	2 cut(s)	280, 474
BstDEI	CTNAG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	58, 457
BstMBI	GATC	2 cut(s)	55, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	356, 510
BstSCI	CCNGG	3 cut(s)	354, 407, 508
BstSLI	GKGCMC	3 cut(s)	110, 541, 563
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	164, 359, 561
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	280, 474
Cfr13I	GGNCC	3 cut(s)	299, 559, 560
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	229, 313
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	57, 456
DpnII	GATC	2 cut(s)	55, 454
DraIII	CACNNNGTG	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	427, 527
EarI	CTCTTC	2 cut(s)	427, 527
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	102, 270, 283
Eco24I	GRGCYC	2 cut(s)	312, 563
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	51, 468
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	354, 508
EcoT14I	CCWWGG	3 cut(s)	102, 270, 283
EcoT38I	GRGCYC	2 cut(s)	312, 563
ErhI	CCWWGG	3 cut(s)	102, 270, 283
FaeI	CATG	2 cut(s)	232, 316
FaiI	YATR	8 cut(s)	230, 263, 314, 350, 362, 545, 547, 581
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 444, 476
FatI	CATG	2 cut(s)	228, 312
FauNDI	CATATG	1 cut(s)	545
Fnu4HI	GCNGC	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	312, 563
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	279, 296
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	164, 359, 561
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	2 cut(s)	232, 316
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	225, 292, 340
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	2 cut(s)	158, 246
Hpy166II	GTNNAC	4 cut(s)	418, 466, 526, 539
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	4 cut(s)	418, 466, 526, 539
HpyAV	CCTTC	2 cut(s)	215, 573
HpyCH4III	ACNGT	3 cut(s)	91, 121, 337
HpyCH4V	TGCA	3 cut(s)	11, 515, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	232, 316
KpnI	GGTACC	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	55, 454
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	176
LweI	GCATC	2 cut(s)	255, 579
MabI	ACCWGGT	1 cut(s)	508
MaeI	CTAG	2 cut(s)	279, 296
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	57, 456
MboI	GATC	2 cut(s)	55, 454
MboII	GAAGA	5 cut(s)	444, 449, 461, 464, 544
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	4 cut(s)	110, 312, 541, 563
MluCI	AATT	5 cut(s)	14, 233, 246, 368, 480
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	56, 151, 154, 299
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
MslI	CAYNNNNRTG	1 cut(s)	544
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	356, 409, 510
MvaI	CCWGG	2 cut(s)	356, 510
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	55, 454
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	232, 316
NlaIV	GGNNCC	2 cut(s)	334, 561
NmuCI	GTSAC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	225, 292
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	354, 508
PspGI	CCWGG	2 cut(s)	354, 508
PspN4I	GGNNCC	2 cut(s)	334, 561
PspOMI	GGGCCC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	299, 559, 560
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	544
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	55, 454
Sau96I	GGNCC	3 cut(s)	299, 559, 560
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	356, 409, 510
SduI	GDGCHC	4 cut(s)	110, 312, 541, 563
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	2 cut(s)	255, 579
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	14, 233, 246, 368, 480
SsiI	CCGC	2 cut(s)	43, 477
SspMI	CTAG	2 cut(s)	279, 296
StyD4I	CCNGG	3 cut(s)	354, 407, 508
StyI	CCWWGG	3 cut(s)	102, 270, 283
TaaI	ACNGT	3 cut(s)	91, 121, 337
TaqI	TCGA	1 cut(s)	566
TasI	AATT	5 cut(s)	14, 233, 246, 368, 480
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	225, 292
Tru1I	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
Tru9I	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	3 cut(s)	14, 233, 368
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	279, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.