Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000029.1

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Reverse (-)

73284 .. 76604

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggctctagtgaatgttgctgctctccagtttacaacttctgccctttttgggactcgttctgcaacttcaaactttcaggtcttgcaggctaagagaatgtccattcttgagttttctgtagatttctccatgaagccggtagtaatgagagcgaggcagcatgccagaaccgaaagtgcgaaaactctaaacagaagaatgcagaagaagtacaatggcacgcctaagaagccgaggctttcagtattctgttcagacaaacaattgtatgctatgctggtagatgaccaaaacaagaaatgtttgttttatggaagcaccctgcagaaatctattcgccaggatccccattgtagtacccctgaagctgcaaaacgtgttggcaaggagttaatcaaggcctgcaatgatctcaacataggcgaaatatcgtcttatgatcgcaatgggtttgctaccggggaaaggattcaagcatttgagattgcaatttcagaatacgggtcggcggcgtggctagagacgattgaatcacccggagagatgtcgtggcagtggggatcgcgactagacgggtcgaatggcttaggtcagccggaactcgacgacgaaggtgatgggagcagatgtttgtattggactgaaccagatgatgggcctgaagggatcgcctgggtgactaccctaatgggcttcgagttgttaggttggggtcctcccctagtccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

244

Amino Acids

27.19

Weight (kDa)

6.34

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	57 - 169	6.1e-16	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	1 cut(s)	568
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	4 cut(s)	341, 354, 571, 677
AcuI	CTGAAG	2 cut(s)	387, 684
AfaI	GTAC	2 cut(s)	215, 361
AfiI	CCNNNNNNNGG	3 cut(s)	51, 468, 656
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	72, 476, 533
AjnI	CCWGG	2 cut(s)	342, 674
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	4 cut(s)	341, 354, 571, 677
AoxI	GGCC	2 cut(s)	402, 659
ApeKI	GCWGC	3 cut(s)	20, 160, 371
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	659, 716
AsuC2I	CCSGG	2 cut(s)	463, 540
AsuHPI	GGTGA	3 cut(s)	528, 629, 691
AvaII	GGWCC	1 cut(s)	716
BamHI	GGATCC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	7, 172, 358
BccI	CCATC	2 cut(s)	614, 650
BciT130I	CCWGG	2 cut(s)	344, 676
BcnI	CCSGG	2 cut(s)	463, 540
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	4 cut(s)	8, 521, 572, 725
BfmI	CTRYAG	2 cut(s)	120, 326
BisI	GCNGC	4 cut(s)	21, 161, 372, 513
BlsI	GCNGC	4 cut(s)	22, 162, 373, 514
Bme1390I	CCNGG	4 cut(s)	344, 463, 540, 676
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	659, 716
BmiI	GGNNCC	2 cut(s)	348, 717
BmrFI	CCNGG	4 cut(s)	344, 463, 540, 676
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	463, 540
BsaJI	CCNNGG	3 cut(s)	236, 462, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 468, 656
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	415, 454
BseBI	CCWGG	2 cut(s)	344, 676
BseDI	CCNNGG	3 cut(s)	236, 462, 675
BseLI	CCNNNNNNNGG	3 cut(s)	51, 468, 656
BseMI	GCAATG	2 cut(s)	415, 454
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	7, 172, 358
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	404, 661
BsiSI	CCGG	4 cut(s)	140, 462, 540, 599
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	51, 468, 656
BsmAI	GTCTC	1 cut(s)	518
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	404, 661
Bsp143I	GATC	5 cut(s)	346, 412, 442, 563, 669
Bsp68I	TCGCGA	1 cut(s)	568
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	2 cut(s)	404, 661
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	348, 717
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	4 cut(s)	341, 354, 571, 677
BsrDI	GCAATG	2 cut(s)	415, 454
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	236, 462, 675
BssMI	GATC	5 cut(s)	346, 412, 442, 563, 669
Bst2UI	CCWGG	2 cut(s)	344, 676
BstC8I	GCNNGC	4 cut(s)	90, 165, 224, 406
BstDEI	CTNAG	3 cut(s)	93, 228, 589
BstFNI	CGCG	1 cut(s)	568
BstKTI	GATC	5 cut(s)	349, 415, 445, 566, 672
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	5 cut(s)	346, 412, 442, 563, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	2 cut(s)	344, 676
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	342, 461, 538, 674
BstSFI	CTRYAG	2 cut(s)	120, 326
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	3 cut(s)	7, 172, 358
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	404, 661
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	1 cut(s)	563
BtuMI	TCGCGA	1 cut(s)	568
Cac8I	GCNNGC	4 cut(s)	90, 165, 224, 406
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	659, 716
Csp6I	GTAC	2 cut(s)	214, 360
CviAII	CATG	2 cut(s)	133, 164
CviQI	GTAC	2 cut(s)	214, 360
DdeI	CTNAG	3 cut(s)	93, 228, 589
DpnI	GATC	5 cut(s)	348, 414, 444, 565, 671
DpnII	GATC	5 cut(s)	346, 412, 442, 563, 669
Eco147I	AGGCCT	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	387, 684
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	342, 674
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	2 cut(s)	136, 167
FaiI	YATR	7 cut(s)	134, 165, 273, 278, 315, 422, 441
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	132, 163
Fnu4HI	GCNGC	4 cut(s)	21, 161, 372, 513
Fsp4HI	GCNGC	4 cut(s)	21, 161, 372, 513
FspBI	CTAG	4 cut(s)	8, 521, 572, 725
GluI	GCNGC	4 cut(s)	21, 161, 372, 513
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	404, 661
HapII	CCGG	4 cut(s)	140, 462, 540, 599
Hin1II	CATG	2 cut(s)	136, 167
HinfI	GANTC	3 cut(s)	55, 472, 533
HpaII	CCGG	4 cut(s)	140, 462, 540, 599
HphI	GGTGA	3 cut(s)	528, 629, 691
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	259, 499
Hpy188III	TCNNGA	2 cut(s)	110, 567
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	2 cut(s)	611, 614
HpyAV	CCTTC	2 cut(s)	608, 659
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	65, 88, 205, 328, 374, 408, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	3 cut(s)	93, 228, 589
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	136, 167
Kzo9I	GATC	5 cut(s)	346, 412, 442, 563, 669
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	3 cut(s)	7, 172, 358
MaeI	CTAG	4 cut(s)	8, 521, 572, 725
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	5 cut(s)	348, 414, 444, 565, 671
MboI	GATC	5 cut(s)	346, 412, 442, 563, 669
MboII	GAAGA	2 cut(s)	210, 220
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	2 cut(s)	266, 492
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	150, 231, 729
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	1 cut(s)	395
MspI	CCGG	4 cut(s)	140, 462, 540, 599
MspR9I	CCNGG	4 cut(s)	344, 463, 540, 676
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	344, 676
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	1 cut(s)	232
NciI	CCSGG	2 cut(s)	463, 540
NdeII	GATC	5 cut(s)	346, 412, 442, 563, 669
NlaIII	CATG	2 cut(s)	136, 167
NlaIV	GGNNCC	2 cut(s)	348, 717
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	679
NruI	TCGCGA	1 cut(s)	568
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	404
PctI	GAATGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	472, 533
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	4 cut(s)	22, 162, 373, 514
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	342, 674
PspGI	CCWGG	2 cut(s)	342, 674
PspN4I	GGNNCC	2 cut(s)	348, 717
PspPI	GGNCC	2 cut(s)	659, 716
PspPPI	RGGWCCY	1 cut(s)	716
PstI	CTGCAG	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	346
RruI	TCGCGA	1 cut(s)	568
RsaI	GTAC	2 cut(s)	215, 361
RsaNI	GTAC	2 cut(s)	214, 360
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	4 cut(s)	21, 161, 372, 513
Sau3AI	GATC	5 cut(s)	346, 412, 442, 563, 669
Sau96I	GGNCC	2 cut(s)	659, 716
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	4 cut(s)	344, 463, 540, 676
SetI	ASST	6 cut(s)	84, 373, 382, 595, 619, 712
SfcI	CTRYAG	2 cut(s)	120, 326
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	266, 492
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	4 cut(s)	8, 521, 572, 725
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	4 cut(s)	342, 461, 538, 674
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	581, 606, 699
TasI	AATT	2 cut(s)	266, 492
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	2 cut(s)	472, 533
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	563
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	3 cut(s)	20, 160, 371
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	563
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	716
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	4 cut(s)	8, 521, 572, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.