Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000076.1

Orthogroup ID

OG0007098

Physical Location & Seq

Genomic Coordinates Forward (+)

48475 .. 50917

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggttaatagaggtgatctggttatcattggcatctctgctggtgtagcccttggaattttgatagctgcactcatatttttcggaataaggtggtaccaaaagcatgccaatcttcgacgatgtgctaatgagcgtagtttaacaactcttcctatacgcacaaatggcttaggcacaagcatcgaccttagtgtatctctttcaactaacatacctattcaaggatccgagaaggttaaaaaaagttctccactctcctggtggaataatcacaacaaagaacgatttccttcagcatcaggcgtacctagatactcttacaaggatgtgcagaaagctacacagaatttcacaacaattttaggacaaggggcttttggtccagtatataaagcaacaatgcctgctggagaggtagtagctgtgaaggtgcttgcttcagattccaagcagggagagaaagagttccaaacagaggtatctctgttaggaagactgcatcatcgaaatctagtgaacctcgtaggttactgtgtagataaaggacagcgtatgttaatctatgagttcatgagtaatggcagcttatcaaaccttctgtacaaatcatctcgctttacattttatgtaggtgaagaacaacaggttttgagctgggatgaaaggctgcaaattgctcttgatatttcgcatggaatagagtaccttcacgaaggggttgctgattttggactgtctaaggaagaggtgtttgatggtcggaattcaggcctcaagggtacctatggctacatagatccggaatacatgtctacaaacaagttcacaatgaagagtgacatttacagttttggggtcatcatctttgaactcataacagccatccaccctcaccaaaacctaatggaatatgttaatcttgcttctatggctccagatggtgttgacgaaatacttgataacaagctagttggggaatgcaaccttgaagaagtgaggaggctggctaaaattgctcacagatgcttactgaaattaccgagaaagcggccttccatcggagagatttcacaggccatattgaagattaaacagatgcgtcttgataaaagggataccatgtcttttgcaggtgaagaattttcacgggcagtaagcagaatagaggttcagcaggtggagctggttaggctggccagcacaaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

404

Amino Acids

45.3

Weight (kDa)

8.82

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	118 - 239	2.3e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	120 - 239	9e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	241 - 360	8.2e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	241 - 359	1.1e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15730 AT5G15730 AT5G15730
fragaria_vesca	FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190 FvH4_6g46190
malus_domestica	MD09G1076200.v1.1
prunus_persica	Prupe.3G247800_v2.0.a1
pyrus_communis	pycom09g00350
rosa_chinensis	RchiOBHm_Chr2g0164631
rosa_laevigata	RLG00000021472
rosa_multiflora	Rmu_co8438103.1_g000001 Rmu_sc0000946.1_g000004 Rmu_sc0023927.1_g000001 Rmu_ssc0000076.1_g000008
rosa_roxburghii	Rroxscaffold_2G00086420
rosa_rugosa	Rorug02G0509500 Rorug02G0509500
rosa_samantha	Rh2AG577300 Rh2CG559300 Rh2DG599100
rosa_wichuraiana	Rw2G047940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1124, 1168
Acc36I	ACCTGC	2 cut(s)	1124, 1168
Acc65I	GGTACC	2 cut(s)	96, 782
AccB1I	GGYRCC	2 cut(s)	96, 782
AccI	GTMKAC	1 cut(s)	815
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	1 cut(s)	1051
AclWI	GGATC	3 cut(s)	222, 235, 794
AcoI	YGGCCR	1 cut(s)	1197
AcsI	RAATTY	4 cut(s)	57, 349, 766, 1142
AcuI	CTGAAG	2 cut(s)	279, 426
AfaI	GTAC	5 cut(s)	98, 309, 605, 707, 784
AfiI	CCNNNNNNNGG	3 cut(s)	224, 478, 1061
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	5 cut(s)	207, 224, 872, 992, 1087
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	7 cut(s)	68, 341, 425, 588, 657, 970, 1186
AluI	AGCT	7 cut(s)	68, 341, 425, 588, 657, 970, 1186
AlwI	GGATC	3 cut(s)	222, 235, 794
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	4 cut(s)	772, 1052, 1077, 1197
ApeKI	GCWGC	3 cut(s)	68, 585, 670
ApoI	RAATTY	4 cut(s)	57, 349, 766, 1142
Asp700I	GAANNNNTTC	2 cut(s)	288, 467
Asp718I	GGTACC	2 cut(s)	96, 782
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	26, 647, 887, 1148
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BalI	TGGCCA	1 cut(s)	1199
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	2 cut(s)	96, 782
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	55, 597, 657
BccI	CCATC	4 cut(s)	752, 893, 935, 1067
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 704, 738
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	1111
BfaI	CTAG	3 cut(s)	312, 515, 971
BfuAI	ACCTGC	2 cut(s)	1124, 1168
BfuI	GTATCC	1 cut(s)	1111
BisI	GCNGC	4 cut(s)	69, 586, 671, 1052
BlsI	GCNGC	4 cut(s)	70, 587, 672, 1053
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	4 cut(s)	98, 229, 784, 936
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	6 cut(s)	42, 192, 308, 511, 1016, 1089
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	432, 921
Bpu10I	CCTNAGC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 478, 1061
Bse1I	ACTGG	1 cut(s)	386
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	334, 667, 885
BseLI	CCNNNNNNNGG	3 cut(s)	224, 478, 1061
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	1015
BseXI	GCAGC	3 cut(s)	55, 597, 657
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	2 cut(s)	54, 353
BshFI	GGCC	4 cut(s)	774, 1054, 1079, 1199
BshNI	GGYRCC	2 cut(s)	96, 782
BsiSI	CCGG	1 cut(s)	803
BslI	CCNNNNNNNGG	3 cut(s)	224, 478, 1061
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	4 cut(s)	774, 1054, 1079, 1199
Bsp13I	TCCGGA	1 cut(s)	802
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	16, 227, 799
BspACI	CCGC	1 cut(s)	1051
BspANI	GGCC	4 cut(s)	774, 1054, 1079, 1199
BspEI	TCCGGA	1 cut(s)	802
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	4 cut(s)	98, 229, 784, 936
BspMI	ACCTGC	2 cut(s)	1124, 1168
BspPI	GGATC	3 cut(s)	222, 235, 794
BspT107I	GGYRCC	2 cut(s)	96, 782
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	16, 227, 799
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	536, 738, 851
Bst6I	CTCTTC	3 cut(s)	156, 741, 830
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	6 cut(s)	108, 408, 438, 1008, 1197, 1201
BstDEI	CTNAG	3 cut(s)	172, 191, 741
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	334, 667, 885
BstKTI	GATC	3 cut(s)	19, 230, 802
BstMBI	GATC	3 cut(s)	16, 227, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 168, 932, 1016, 1183, 1192
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	2 cut(s)	110, 814
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	55, 597, 657
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	227, 799
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	2 cut(s)	227, 799
BsuI	GTATCC	1 cut(s)	1111
BsuRI	GGCC	4 cut(s)	774, 1054, 1079, 1199
BtsCI	GGATG	3 cut(s)	334, 667, 885
BveI	ACCTGC	2 cut(s)	1124, 1168
Cac8I	GCNNGC	6 cut(s)	108, 408, 438, 1008, 1197, 1201
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	1091
Csp6I	GTAC	5 cut(s)	97, 308, 604, 706, 783
CviAII	CATG	5 cut(s)	107, 574, 695, 811, 1123
CviQI	GTAC	5 cut(s)	97, 308, 604, 706, 783
DdeI	CTNAG	3 cut(s)	172, 191, 741
DpnI	GATC	3 cut(s)	18, 229, 801
DpnII	GATC	3 cut(s)	16, 227, 799
EaeI	YGGCCR	1 cut(s)	1197
Eam1104I	CTCTTC	3 cut(s)	156, 741, 830
EarI	CTCTTC	3 cut(s)	156, 741, 830
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	279, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	5 cut(s)	110, 577, 698, 814, 1126
FatI	CATG	5 cut(s)	106, 573, 694, 810, 1122
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	4 cut(s)	69, 586, 671, 1052
FokI	GGATG	3 cut(s)	341, 674, 872
Fsp4HI	GCNGC	4 cut(s)	69, 586, 671, 1052
FspBI	CTAG	3 cut(s)	312, 515, 971
GluI	GCNGC	4 cut(s)	69, 586, 671, 1052
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	2 cut(s)	432, 921
HaeIII	GGCC	4 cut(s)	774, 1054, 1079, 1199
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	1 cut(s)	1091
Hin1II	CATG	5 cut(s)	110, 577, 698, 814, 1126
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	4 cut(s)	26, 647, 887, 1148
Hpy166II	GTNNAC	4 cut(s)	520, 816, 828, 949
Hpy188I	TCNGA	5 cut(s)	86, 232, 445, 765, 1064
Hpy188III	TCNNGA	6 cut(s)	574, 683, 713, 803, 938, 1106
Hpy8I	GTNNAC	4 cut(s)	520, 816, 828, 949
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	229, 303, 424, 608, 710, 719, 1065
HpyCH4III	ACNGT	3 cut(s)	536, 738, 851
HpyCH4V	TGCA	6 cut(s)	71, 334, 502, 673, 984, 1133
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 168, 932, 1016, 1183, 1192
HpyF3I	CTNAG	3 cut(s)	172, 191, 741
Hsp92II	CATG	5 cut(s)	110, 577, 698, 814, 1126
Kpn2I	TCCGGA	1 cut(s)	802
KpnI	GGTACC	2 cut(s)	100, 786
Kzo9I	GATC	3 cut(s)	16, 227, 799
LmnI	GCTCC	2 cut(s)	940, 1183
Lsp1109I	GCAGC	3 cut(s)	55, 597, 657
LweI	GCATC	6 cut(s)	42, 192, 308, 511, 1016, 1089
MaeI	CTAG	3 cut(s)	312, 515, 971
MaeIII	GTNAC	2 cut(s)	530, 839
MalI	GATC	3 cut(s)	18, 229, 801
MboI	GATC	3 cut(s)	16, 227, 799
MboII	GAAGA	9 cut(s)	107, 143, 507, 650, 758, 847, 1004, 1099, 1151
MflI	RGATCY	2 cut(s)	227, 799
MlsI	TGGCCA	1 cut(s)	1199
MluCI	AATT	8 cut(s)	57, 349, 360, 675, 766, 1014, 1037, 1142
MluNI	TGGCCA	1 cut(s)	1199
MmeI	TCCRAC	1 cut(s)	743
Mox20I	TGGCCA	1 cut(s)	1199
MroI	TCCGGA	1 cut(s)	802
MroXI	GAANNNNTTC	2 cut(s)	288, 467
MscI	TGGCCA	1 cut(s)	1199
MseI	TTAA	6 cut(s)	6, 143, 240, 560, 918, 1092
Msp20I	TGGCCA	1 cut(s)	1199
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	6 cut(s)	47, 168, 932, 1016, 1183, 1192
NdeII	GATC	3 cut(s)	16, 227, 799
NlaIII	CATG	5 cut(s)	110, 577, 698, 814, 1126
NlaIV	GGNNCC	4 cut(s)	98, 229, 784, 936
NmuCI	GTSAC	1 cut(s)	839
NspI	RCATGY	2 cut(s)	110, 814
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	573
PaqCI	CACCTGC	2 cut(s)	1124, 1168
PceI	AGGCCT	1 cut(s)	774
PciI	ACATGT	1 cut(s)	810
PctI	GAATGC	1 cut(s)	986
PdmI	GAANNNNTTC	2 cut(s)	288, 467
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	70, 587, 672, 1053
PscI	ACATGT	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	98, 229, 784, 936
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	227, 799
RsaI	GTAC	5 cut(s)	98, 309, 605, 707, 784
RsaNI	GTAC	5 cut(s)	97, 308, 604, 706, 783
SaqAI	TTAA	6 cut(s)	6, 143, 240, 560, 918, 1092
SatI	GCNGC	4 cut(s)	69, 586, 671, 1052
Sau3AI	GATC	3 cut(s)	16, 227, 799
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	262
SfaNI	GCATC	6 cut(s)	42, 192, 308, 511, 1016, 1089
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	8 cut(s)	57, 349, 360, 675, 766, 1014, 1037, 1142
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	1 cut(s)	1051
SspMI	CTAG	3 cut(s)	312, 515, 971
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	536, 738, 851
TaqI	TCGA	3 cut(s)	118, 186, 508
TasI	AATT	8 cut(s)	57, 349, 360, 675, 766, 1014, 1037, 1142
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	1054
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	6 cut(s)	6, 143, 240, 560, 918, 1092
Tru9I	TTAA	6 cut(s)	6, 143, 240, 560, 918, 1092
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	3 cut(s)	68, 585, 670
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	3 cut(s)	562, 678, 848
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	4 cut(s)	57, 349, 766, 1142
XceI	RCATGY	2 cut(s)	110, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	815
XmnI	GAANNNNTTC	2 cut(s)	288, 467
XspI	CTAG	3 cut(s)	312, 515, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.