Rmu_ssc0000155.1_g000024

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0013721
Physical Location & Seq
Reverse (-)
100698 .. 101699
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
atgcatcatcaatgggaatgtcttgatctggacgtggtgtttttggttcttgataaattgttggaacccatcgaccgtgttagtttcggggtagtttgtaaagaatggggtcgtctttcaagagcctataagcgatggtgtgagcgaaaggtgctccccatgcttctagtcccaagcgactacgatgaatcacgtcaggaatggcgttatggaaagaagaacagacgaccaaagcaccaaggattactgtacagcattttggaacgaagaatctacagccatgtgcagagtcttctgctcccatcagtaagtaaaccaagacgtggatgtagcagatactatcgtggatgtggtcatggttgggtggccatgatagacatggatgagtttagaagggaagtgattataactctcgtcaaccccttcacaactgcaatgttgcagcgtttccctccattggaaatctatggctggggtatcccaaaagttatcttgtccgaagatccgactttgaatcaagacaattatgtggttgtagctttatctgattatgactccttggatttcatcaaaggaagacaagattggtatcatatcgaatgcaaaccgtacctcgcagagtttgaacattgcaaatttactgatgctatattttacaggggccaaatctatatggctgataattgttgcggaataattgcggtgttcgattacaaaagcaaacaacaaatgtacttggaaaagttatgcacaccatttcaaaatttatcacaacgagctgaacgagcatatcttgtggaatcaatcaagggagacttgttgtatattttaagatttacaacattaaagagtttagacgaaggccatgtgaccgagaattttagggtatataagatggtgctcaatggatccattgtggagcatgttgagataaagagcattggagacgaggctttgtttgttggtgacacggccatgaactcccgaaaggcggttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

333

Amino Acids

39.11

Weight (kDa)

7.96

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 108 - 325 1.9e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 3 cut(s) 690, 701, 992
AclWI GGATC 3 cut(s) 497, 903, 916
AcoI YGGCCR 2 cut(s) 366, 972
AcsI RAATTY 3 cut(s) 635, 763, 877
AfaI GTAC 3 cut(s) 251, 611, 734
AfiI CCNNNNNNNGG 3 cut(s) 323, 457, 991
AgsI TTSAA 4 cut(s) 120, 514, 626, 761
AjiI CACGTC 3 cut(s) 34, 194, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 2 cut(s) 539, 779
AluI AGCT 2 cut(s) 539, 779
Alw21I GWGCWC 2 cut(s) 156, 903
Alw26I GTCTC 2 cut(s) 807, 939
AlwI GGATC 3 cut(s) 497, 903, 916
AoxI GGCC 4 cut(s) 366, 661, 862, 972
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 3 cut(s) 635, 763, 877
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 977
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 908
BbsI GAAGAC 2 cut(s) 284, 583
Bbv12I GWGCWC 2 cut(s) 156, 903
BbvI GCAGC 1 cut(s) 454
BccI CCATC 4 cut(s) 77, 129, 310, 889
BceAI ACGGC 1 cut(s) 987
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 807, 939
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 274
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
BmgBI CACGTC 3 cut(s) 34, 194, 323
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 3 cut(s) 66, 662, 910
BmsI GCATC 2 cut(s) 13, 634
BpiI GAAGAC 2 cut(s) 284, 583
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 238, 558
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 457, 991
Bse3DI GCAATG 2 cut(s) 441, 628
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 238, 558
BseGI GGATG 3 cut(s) 332, 353, 388
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 3 cut(s) 323, 457, 991
BseMI GCAATG 2 cut(s) 441, 628
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 4 cut(s) 368, 663, 864, 974
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 156, 903
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 323, 457, 991
BsmAI GTCTC 2 cut(s) 807, 939
BsmBI CGTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 4 cut(s) 368, 663, 864, 974
Bsp1286I GDGCHC 2 cut(s) 156, 903
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 3 cut(s) 25, 502, 908
BspACI CCGC 3 cut(s) 690, 701, 992
BspANI GGCC 4 cut(s) 368, 663, 864, 974
BspLI GGNNCC 3 cut(s) 66, 662, 910
BspPI GGATC 3 cut(s) 497, 903, 916
BsrDI GCAATG 2 cut(s) 441, 628
BsrGI TGTACA 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 238, 558
BssMI GATC 3 cut(s) 25, 502, 908
BssT1I CCWWGG 2 cut(s) 238, 558
Bst4CI ACNGT 3 cut(s) 77, 249, 609
BstAUI TGTACA 1 cut(s) 249
BstF5I GGATG 3 cut(s) 332, 353, 388
BstKTI GATC 3 cut(s) 28, 505, 911
BstMAI GTCTC 2 cut(s) 807, 939
BstMBI GATC 3 cut(s) 25, 502, 908
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 151, 160, 785
BstNSI RCATGY 1 cut(s) 926
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 284, 583
BstX2I RGATCY 2 cut(s) 502, 908
BstYI RGATCY 2 cut(s) 502, 908
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 4 cut(s) 368, 663, 864, 974
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 3 cut(s) 34, 194, 323
BtsCI GGATG 3 cut(s) 332, 353, 388
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 3 cut(s) 250, 610, 733
CviAII CATG 8 cut(s) 160, 281, 356, 370, 379, 866, 923, 976
CviQI GTAC 3 cut(s) 250, 610, 733
DpnI GATC 3 cut(s) 27, 504, 910
DpnII GATC 3 cut(s) 25, 502, 908
EaeI YGGCCR 2 cut(s) 366, 972
Eco130I CCWWGG 2 cut(s) 238, 558
EcoT14I CCWWGG 2 cut(s) 238, 558
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 238, 558
Esp3I CGTCTC 1 cut(s) 939
FaeI CATG 8 cut(s) 163, 284, 359, 373, 382, 869, 926, 979
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 155
FatI CATG 8 cut(s) 159, 280, 355, 369, 378, 865, 922, 975
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 3 cut(s) 339, 360, 395
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 443
GsaI CCCAGC 1 cut(s) 475
HaeIII GGCC 4 cut(s) 368, 663, 864, 974
Hin1II CATG 8 cut(s) 163, 284, 359, 373, 382, 869, 926, 979
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 6 cut(s) 188, 270, 289, 514, 554, 800
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 2 cut(s) 314, 418
Hpy188I TCNGA 3 cut(s) 499, 507, 547
Hpy188III TCNNGA 7 cut(s) 23, 29, 50, 120, 197, 518, 984
Hpy8I GTNNAC 2 cut(s) 314, 418
HpyAV CCTTC 3 cut(s) 387, 433, 854
HpyCH4III ACNGT 3 cut(s) 77, 249, 609
HpyCH4IV ACGT 3 cut(s) 33, 193, 322
HpyCH4V TGCA 7 cut(s) 4, 286, 434, 442, 603, 633, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 160, 785
HpySE526I ACGT 3 cut(s) 33, 193, 322
Hsp92II CATG 8 cut(s) 163, 284, 359, 373, 382, 869, 926, 979
Kzo9I GATC 3 cut(s) 25, 502, 908
LmnI GCTCC 3 cut(s) 159, 303, 919
LpnPI CCDG 4 cut(s) 14, 182, 457, 643
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 13, 634
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 33, 193, 322
MaeIII GTNAC 2 cut(s) 868, 965
MalI GATC 3 cut(s) 27, 504, 910
MboI GATC 3 cut(s) 25, 502, 908
MboII GAAGA 5 cut(s) 229, 279, 284, 512, 588
MflI RGATCY 2 cut(s) 502, 908
MhlI GDGCHC 2 cut(s) 156, 903
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 7 cut(s) 56, 523, 635, 682, 696, 763, 877
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 298, 548
MmeI TCCRAC 2 cut(s) 42, 530
MnlI CCTC 3 cut(s) 462, 623, 943
Mox20I TGGCCA 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 368
MseI TTAA 2 cut(s) 830, 845
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 151, 160, 785
NdeII GATC 3 cut(s) 25, 502, 908
NlaIII CATG 8 cut(s) 163, 284, 359, 373, 382, 869, 926, 979
NlaIV GGNNCC 3 cut(s) 66, 662, 910
NmuCI GTSAC 2 cut(s) 868, 965
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 926
PcsI WCGNNNNNNNCGW 1 cut(s) 781
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 4 cut(s) 188, 270, 514, 800
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 2 cut(s) 297, 548
PpsI GAGTC 2 cut(s) 297, 548
PsiI TTATAA 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 66, 662, 910
PspPI GGNCC 1 cut(s) 661
PsuI RGATCY 2 cut(s) 502, 908
RsaI GTAC 3 cut(s) 251, 611, 734
RsaNI GTAC 3 cut(s) 250, 610, 733
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 2 cut(s) 830, 845
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 3 cut(s) 25, 502, 908
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 2 cut(s) 298, 548
SduI GDGCHC 2 cut(s) 156, 903
SetI ASST 7 cut(s) 36, 153, 196, 325, 541, 615, 781
SfaNI GCATC 2 cut(s) 13, 634
SfcI CTRYAG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 974
Sse9I AATT 7 cut(s) 56, 523, 635, 682, 696, 763, 877
SsiI CCGC 3 cut(s) 690, 701, 992
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 2 cut(s) 238, 558
TaaI ACNGT 3 cut(s) 77, 249, 609
TaiI ACGT 3 cut(s) 36, 196, 325
TaqI TCGA 3 cut(s) 72, 597, 708
TaqII GACCGA 1 cut(s) 887
TasI AATT 7 cut(s) 56, 523, 635, 682, 696, 763, 877
TatI WGTACW 2 cut(s) 249, 732
TfiI GAWTC 4 cut(s) 188, 270, 514, 800
Tru1I TTAA 2 cut(s) 830, 845
Tru9I TTAA 2 cut(s) 830, 845
TseFI GTSAC 2 cut(s) 868, 965
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 2 cut(s) 868, 965
TspDTI ATGAA 3 cut(s) 201, 556, 992
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 3 cut(s) 635, 763, 877
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.