Rh1CG391100

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013721
Physical Location & Seq
Forward (+)
65946991 .. 65949291
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG391100.1

Sequence Viewer

Length: 1461 bp
ATGCATACCAACTTCAATAGGGTGGTAAACCCTAGCCTCCAACAACACGTTAGAGCTAGTGAGGTACTCACAGGTTCAGATTCAATACATCATCAATGGGAGTGTCTTGATCTGGACGTGGCTTGTTTGGTTCTTGATAAGTTATTGGAATCCATCGACCGGGCTAGTTTCGGTGTGGTTTGCAAAGAATGGGGTCGTCTTGCAAGAGCCTATAGGCGATTGTGTAAGCCAAAGGTGCTTCCCATGCTCCTAATCCCTATAGACTACCATCACTACTATGGAAAGAAGAACTCACGACTATCACTAGAGACTATTATGCACCAAGGATTACTGTACAGTGTTTCGAAACGAAGAATCTACCGGCGTGTGCAGAGTATTATGCTCCCATCAGTAGGTGAACCAGAAACTAGATATAGCAGATACTATCGTGGATGTGGGCATGGTTGGGTGGCCATGATAGACATGGATGTGATATTAGGAAGTGAAACGATTATAACTCTCGTCAACCCTTTCACAACAGTAATATTGCCGTCTTTACCTCCTCTGAAATGCTATAACTCGGGTATCCCAAAAGTTATCTTGTCCGAAGATCCGACTTCGAATCCAGACCATTACGTGGTTGTAGCTTTCGCTGATGATTATGCCTCCATGGATTTCATCAAAGGAAGACAAGGTTGGTATCATATCGATTGCAGACCATACCTCGCAGAGCCTGATGATTGCAATTTTACTGATGCTATATTTTACAGAGGCCAAATCTACATGGCTGATAGTTATTACGGGATAATTGCGGTGTTTGATTATAAAAGCAAACAACAAGTATACTTGGAAAAGATATACACACCACCGCCACCTGCTGCACGAGATGAATCCGAACGGGCATATCTTGTGGAATCAATCAATGGAGACATATTCTATATTCGACGGTTAACAAAGTCAAGGTATTATATTTATAGTGATCTGACCAAGAGTTTTAGGGTTTTTAAGGTGGTGCTCAATGGAAGCACTGTGGAGCATGTTGAGATGCATACCAAATTCGATAGGGTGGTATCTACAATAAACCCTAGGCTCCAACAAGGCTTACCACACATAAGAGCTAGTGAGGTACTCAAAGATTCAGATTCAATGCATCATCAATGGGAATATCTTGATCTGGACGTGGTGTTTTTGGTTCTTGATAAGTTGTTGGAACCCATCGACCGTGTTAGTTTCGGGGTAGTTTGCAAAGAATGGGGTCGTCTTTCAAGAGCCTATAAGCGATGGTGTGAGCGAAAGGTGCTTCCCATGCTTCTAGTCCCTAGCGACTACGATGAATCACGTCAGGAATGGCGTTATGGAAAGAAGAACAGACGACCAAAGCACGTACCAAGGATTACTGTACAGCATTTTGGAACGAATAATCTACAGCCATGTGCAGAGTCTTCTGCTCCCATCAGTAAGAAAACCAAGACGTGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

486

Amino Acids

56.56

Weight (kDa)

8.89

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 112 - 335 8.5e-27 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 494, 804
AarI CACCTGC 1 cut(s) 862
Acc36I ACCTGC 1 cut(s) 862
AccB7I CCANNNNNTGG 2 cut(s) 616, 1452
AccI GTMKAC 1 cut(s) 822
AciI CCGC 2 cut(s) 791, 848
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 1034
AfaI GTAC 5 cut(s) 66, 335, 1107, 1365, 1380
AfiI CCNNNNNNNGG 4 cut(s) 159, 392, 616, 1452
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 4 cut(s) 16, 84, 1125, 1245
AjiI CACGTC 4 cut(s) 118, 1159, 1319, 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 658, 690
AluBI AGCT 3 cut(s) 56, 626, 1097
AluI AGCT 3 cut(s) 56, 626, 1097
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 302, 900
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 2 cut(s) 450, 751
ApeKI GCWGC 1 cut(s) 857
ApoI RAATTY 1 cut(s) 1034
AspA2I CCTAGG 1 cut(s) 1064
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 2 cut(s) 344, 599
AvaI CYCGRG 1 cut(s) 559
AvrII CCTAGG 1 cut(s) 1064
BaeI ACNNNNGTAYC 4 cut(s) 412, 445, 547, 580
BalI TGGCCA 1 cut(s) 452
BauI CACGAG 1 cut(s) 861
BbsI GAAGAC 2 cut(s) 673, 1413
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 844
BccI CCATC 6 cut(s) 161, 276, 394, 1202, 1254, 1439
BceAI ACGGC 1 cut(s) 514
BciVI GTATCC 1 cut(s) 575
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 302, 900
BfaI CTAG 9 cut(s) 33, 57, 165, 305, 408, 1065, 1098, 1292, 1299
BfmI CTRYAG 3 cut(s) 211, 258, 1403
BfuAI ACCTGC 1 cut(s) 862
BfuI GTATCC 1 cut(s) 575
BisI GCNGC 1 cut(s) 858
BlnI CCTAGG 1 cut(s) 1064
BlsI GCNGC 1 cut(s) 859
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 559
BmgBI CACGTC 4 cut(s) 118, 1159, 1319, 1452
BmiI GGNNCC 2 cut(s) 1070, 1191
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 724, 1014, 1138
BpiI GAAGAC 2 cut(s) 673, 1413
Bpu14I TTCGAA 2 cut(s) 344, 599
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 687
BsaAI YACGTR 2 cut(s) 616, 1363
BsaJI CCNNGG 4 cut(s) 322, 648, 1064, 1367
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 392, 616, 1452
Bse118I RCCGGY 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 4 cut(s) 322, 648, 1064, 1367
BseGI GGATG 3 cut(s) 437, 472, 1461
BseLI CCNNNNNNNGG 4 cut(s) 159, 392, 616, 1452
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 1 cut(s) 844
BsgI GTGCAG 3 cut(s) 389, 843, 1434
Bsh1285I CGRYCG 2 cut(s) 160, 1201
BshFI GGCC 2 cut(s) 452, 753
BshVI ATCGAT 1 cut(s) 687
BsiEI CGRYCG 2 cut(s) 160, 1201
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 2 cut(s) 160, 361
BslFI GGGAC 1 cut(s) 1280
BslI CCNNNNNNNGG 4 cut(s) 159, 392, 616, 1452
BsmAI GTCTC 2 cut(s) 302, 900
BsmFI GGGAC 1 cut(s) 1280
BsnI GGCC 2 cut(s) 452, 753
BsoBI CYCGRG 1 cut(s) 559
Bsp119I TTCGAA 2 cut(s) 344, 599
Bsp1286I GDGCHC 1 cut(s) 996
Bsp1407I TGTACA 2 cut(s) 333, 1378
Bsp143I GATC 4 cut(s) 109, 589, 958, 1150
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 2 cut(s) 791, 848
BspANI GGCC 2 cut(s) 452, 753
BspDI ATCGAT 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 1070, 1191
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 1 cut(s) 584
BspT104I TTCGAA 2 cut(s) 344, 599
BsrFI RCCGGY 1 cut(s) 360
BsrGI TGTACA 2 cut(s) 333, 1378
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 322, 648, 1064, 1367
BssMI GATC 4 cut(s) 109, 589, 958, 1150
BssNAI GTATAC 1 cut(s) 823
BssSI CACGAG 1 cut(s) 861
BssT1I CCWWGG 4 cut(s) 322, 648, 1064, 1367
Bst1107I GTATAC 1 cut(s) 823
Bst2BI CACGAG 1 cut(s) 861
Bst4CI ACNGT 7 cut(s) 333, 338, 520, 927, 1009, 1202, 1378
BstAUI TGTACA 2 cut(s) 333, 1378
BstBAI YACGTR 2 cut(s) 616, 1363
BstBI TTCGAA 2 cut(s) 344, 599
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 437, 472, 1461
BstKTI GATC 4 cut(s) 112, 592, 961, 1153
BstMAI GTCTC 2 cut(s) 302, 900
BstMBI GATC 4 cut(s) 109, 589, 958, 1150
BstMCI CGRYCG 2 cut(s) 160, 1201
BstMWI GCNNNNNNNGC 4 cut(s) 235, 244, 1276, 1285
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 3 cut(s) 211, 258, 1403
BstV1I GCAGC 1 cut(s) 844
BstV2I GAAGAC 2 cut(s) 673, 1413
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BstZ17I GTATAC 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 687
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 2 cut(s) 452, 753
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 1273
BtrI CACGTC 4 cut(s) 118, 1159, 1319, 1452
BtsCI GGATG 3 cut(s) 437, 472, 1461
BtsIMutI CAGTG 2 cut(s) 343, 1005
BveI ACCTGC 1 cut(s) 862
CaiI CAGNNNCTG 1 cut(s) 713
Cfr10I RCCGGY 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 687
Csp6I GTAC 5 cut(s) 65, 334, 1106, 1364, 1379
CviAII CATG 9 cut(s) 244, 440, 454, 463, 649, 763, 1016, 1285, 1410
CviQI GTAC 5 cut(s) 65, 334, 1106, 1364, 1379
DpnI GATC 4 cut(s) 111, 591, 960, 1152
DpnII GATC 4 cut(s) 109, 589, 958, 1150
EaeI YGGCCR 1 cut(s) 450
Eco130I CCWWGG 4 cut(s) 322, 648, 1064, 1367
Eco88I CYCGRG 1 cut(s) 559
EcoT14I CCWWGG 4 cut(s) 322, 648, 1064, 1367
EcoT22I ATGCAT 3 cut(s) 6, 1029, 1131
ErhI CCWWGG 4 cut(s) 322, 648, 1064, 1367
FaeI CATG 9 cut(s) 247, 443, 457, 466, 652, 766, 1019, 1288, 1413
FaqI GGGAC 1 cut(s) 1280
FatI CATG 9 cut(s) 243, 439, 453, 462, 648, 762, 1015, 1284, 1409
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 1 cut(s) 858
FokI GGATG 2 cut(s) 444, 479
Fsp4HI GCNGC 1 cut(s) 858
FspBI CTAG 9 cut(s) 33, 57, 165, 305, 408, 1065, 1098, 1292, 1299
GluI GCNGC 1 cut(s) 858
HaeIII GGCC 2 cut(s) 452, 753
HapII CCGG 2 cut(s) 160, 361
Hin1II CATG 9 cut(s) 247, 443, 457, 466, 652, 766, 1019, 1288, 1413
HincII GTYRAC 2 cut(s) 505, 930
HindII GTYRAC 2 cut(s) 505, 930
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 2 cut(s) 160, 361
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 5 cut(s) 28, 398, 505, 823, 930
Hpy188I TCNGA 7 cut(s) 79, 546, 586, 594, 874, 963, 1120
Hpy8I GTNNAC 5 cut(s) 28, 398, 505, 823, 930
Hpy99I CGWCG 1 cut(s) 927
HpyCH4III ACNGT 7 cut(s) 333, 338, 520, 927, 1009, 1202, 1378
HpyCH4IV ACGT 7 cut(s) 48, 117, 615, 1158, 1318, 1362, 1451
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 244, 1276, 1285
HpySE526I ACGT 7 cut(s) 48, 117, 615, 1158, 1318, 1362, 1451
Hsp92II CATG 9 cut(s) 247, 443, 457, 466, 652, 766, 1019, 1288, 1413
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 4 cut(s) 109, 589, 958, 1150
LmnI GCTCC 5 cut(s) 252, 387, 1012, 1074, 1432
Lsp1109I GCAGC 1 cut(s) 844
LweI GCATC 3 cut(s) 724, 1014, 1138
MaeI CTAG 9 cut(s) 33, 57, 165, 305, 408, 1065, 1098, 1292, 1299
MaeII ACGT 7 cut(s) 48, 117, 615, 1158, 1318, 1362, 1451
MalI GATC 4 cut(s) 111, 591, 960, 1152
MboI GATC 4 cut(s) 109, 589, 958, 1150
MboII GAAGA 6 cut(s) 298, 363, 599, 678, 1354, 1413
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 996
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 3 cut(s) 724, 786, 1034
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 1 cut(s) 1427
MmeI TCCRAC 4 cut(s) 64, 617, 1096, 1167
MnlI CCTC 8 cut(s) 47, 55, 549, 552, 655, 713, 743, 1096
Mox20I TGGCCA 1 cut(s) 452
Mph1103I ATGCAT 3 cut(s) 6, 1029, 1131
MscI TGGCCA 1 cut(s) 452
MseI TTAA 2 cut(s) 929, 984
MslI CAYNNNNRTG 2 cut(s) 276, 467
Msp20I TGGCCA 1 cut(s) 452
MspI CCGG 2 cut(s) 160, 361
MspR9I CCNGG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 235, 244, 1276, 1285
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 648
NdeII GATC 4 cut(s) 109, 589, 958, 1150
NlaIII CATG 9 cut(s) 247, 443, 457, 466, 652, 766, 1019, 1288, 1413
NlaIV GGNNCC 2 cut(s) 1070, 1191
NsiI ATGCAT 3 cut(s) 6, 1029, 1131
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 2 cut(s) 344, 599
PaqCI CACCTGC 1 cut(s) 862
PfeI GAWTC 9 cut(s) 80, 149, 354, 601, 869, 893, 1115, 1121, 1313
PflMI CCANNNNNTGG 2 cut(s) 616, 1452
PkrI GCNGC 1 cut(s) 859
PleI GAGTC 1 cut(s) 1426
PpsI GAGTC 1 cut(s) 1426
Ppu21I YACGTR 2 cut(s) 616, 1363
PsiI TTATAA 2 cut(s) 494, 804
PspN4I GGNNCC 2 cut(s) 1070, 1191
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 5 cut(s) 66, 335, 1107, 1365, 1380
RsaNI GTAC 5 cut(s) 65, 334, 1106, 1364, 1379
RseI CAYNNNNRTG 2 cut(s) 276, 467
SaqAI TTAA 2 cut(s) 929, 984
SatI GCNGC 1 cut(s) 858
Sau3AI GATC 4 cut(s) 109, 589, 958, 1150
SchI GAGTC 1 cut(s) 1427
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 3 cut(s) 724, 1014, 1138
SfcI CTRYAG 3 cut(s) 211, 258, 1403
SfuI TTCGAA 2 cut(s) 344, 599
SmiMI CAYNNNNRTG 2 cut(s) 276, 467
Sse9I AATT 3 cut(s) 724, 786, 1034
SsiI CCGC 2 cut(s) 791, 848
SspI AATATT 1 cut(s) 525
SspMI CTAG 9 cut(s) 33, 57, 165, 305, 408, 1065, 1098, 1292, 1299
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 4 cut(s) 322, 648, 1064, 1367
TaaI ACNGT 7 cut(s) 333, 338, 520, 927, 1009, 1202, 1378
TaiI ACGT 7 cut(s) 51, 120, 618, 1161, 1321, 1365, 1454
TaqI TCGA 7 cut(s) 156, 344, 599, 687, 922, 1038, 1197
TasI AATT 3 cut(s) 724, 786, 1034
TatI WGTACW 2 cut(s) 333, 1378
TfiI GAWTC 9 cut(s) 80, 149, 354, 601, 869, 893, 1115, 1121, 1313
Tru1I TTAA 2 cut(s) 929, 984
Tru9I TTAA 2 cut(s) 929, 984
TscAI CASTG 2 cut(s) 343, 1012
TseI GCWGC 1 cut(s) 857
TspDTI ATGAA 3 cut(s) 646, 882, 1326
TspRI CASTG 2 cut(s) 343, 1012
Van91I CCANNNNNTGG 2 cut(s) 616, 1452
XapI RAATTY 1 cut(s) 1034
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 460
XmaJI CCTAGG 1 cut(s) 1064
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 9 cut(s) 33, 57, 165, 305, 408, 1065, 1098, 1292, 1299
Zsp2I ATGCAT 3 cut(s) 6, 1029, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.