Rw1G036690

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013721
Physical Location & Seq
Forward (+)
64551364 .. 64552697
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036690.1

Sequence Viewer

Length: 1302 bp
ATGCATACCAAATTCGATAGGGTGGTATCTACAATAAACCCTAGGCTCCAACAAGGCTTACCACACATAAGAGCTAGTGAGGTACTCAAAGATTCAGATTCAATGCATCATCAATGGGAATGTCTTGATCTGGACGTGGTGTTTTTGGTTCTTGATAAATTGTTGGAACCCATCGACCGTGTTAGTTTCGGGGTAGTTTGTAAAGAATGGGGTCGTCTTTCAAGAGCCTATAAGCGATGGTGTGAGCGAAAGGTGCTCCCCATGCTTCTAGTCCCTAGCGACTACGATGAATCACGTCAGGAATGGCGTTATGGAAAGAAGAACAGACGACCAAAGCACCAAGGATTACTGTACAGCATTTTGGAACGAAGAATCTACAGCCATGTGCAGAGTCTTCTGCTCCCATCAGTAAGTAAACCAAGACGTGGATGTAGCAGATACTATCGTGGATGTGGTCATGGTTGGGTGGCCATGATAGACATGGATGAGTTTAGAAGGGAAGTGATTATAACTCTCGTCAACCCCTTCACAACTGCAATGTTGCAGCGTTTCCCTCCATTGGAAATCTATGGCTGGGGTATCCCAAAAGTTATCTTGTCCGAAGATCCGACTTTGAATCAAGACAATTATGTGGTTGTAGCTTTATCTGATCATGACTCCTTGCATTTCATCAAAGGAAGACAAGATTGGTATCATATCGAATGCAAACCGTACCTCGCAGAGTTTGAACATTGCAAATTTACTGATGCTATATTTTACAGGGGCCAAATCTATATGGCTGATAATTGTTGCGGAATAATTGCGGTGTTCGATTACAAAAGCAAACAACAAATGTACTTGGAAAAGTTATGCACACCATTTCAAAATTTATCACAACGAGCTGAACGAGCATATCTTGTGGAATCAATCAAGGGAGACTTGTTGTATATTTTAAGATTTACAACATTAAAGAGTTTAGACGAAGGCCATGTGACCGAGAATTTTAGGGTATATAAGATGGTGCTCAATGGATCCATTGTGGAGCATGTTGAGATAAAGAGCATTGGAGACGAGGCTTTGTTTGTTGGTGACAGTCATTCAATATCTTTATTGGCTTCAAGCTCTTCAGGATCGTGTCAACCAAATTCGATTTACTTTACAGATGATTCGATAAATTTTTGCCTATATTTAGATAACTACGGCGGACTACAAGTCCTCGACAAGAATATTGAAGATGGAACTATTAGCCAATATTACCCAAAATATTCCTTTGACAGTAAGCTGCTACCACCCGCTTTTTGGATTATACCACCGGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

433

Amino Acids

50.28

Weight (kDa)

6.7

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 142 - 389 5.7e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 425
AciI CCGC 4 cut(s) 792, 803, 1182, 1272
AclWI GGATC 4 cut(s) 599, 1005, 1018, 1117
AcoI YGGCCR 2 cut(s) 468, 1293
AcsI RAATTY 6 cut(s) 11, 737, 865, 979, 1123, 1153
AcuI CTGAAG 1 cut(s) 1089
AfaI GTAC 4 cut(s) 84, 353, 713, 836
AfiI CCNNNNNNNGG 3 cut(s) 425, 559, 1278
AgsI TTSAA 8 cut(s) 102, 222, 616, 728, 863, 1080, 1098, 1211
AhdI GACNNNNNGTC 1 cut(s) 1190
AjiI CACGTC 3 cut(s) 136, 296, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AluBI AGCT 5 cut(s) 74, 641, 881, 1101, 1261
AluI AGCT 5 cut(s) 74, 641, 881, 1101, 1261
Alw21I GWGCWC 2 cut(s) 258, 1005
Alw26I GTCTC 2 cut(s) 909, 1041
AlwI GGATC 4 cut(s) 599, 1005, 1018, 1117
AoxI GGCC 4 cut(s) 468, 763, 964, 1293
ApeKI GCWGC 2 cut(s) 544, 1261
ApoI RAATTY 6 cut(s) 11, 737, 865, 979, 1123, 1153
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 1079
AvrII CCTAGG 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BalI TGGCCA 1 cut(s) 470
BamHI GGATCC 1 cut(s) 1010
BbsI GAAGAC 2 cut(s) 386, 685
Bbv12I GWGCWC 2 cut(s) 258, 1005
BbvI GCAGC 2 cut(s) 556, 1248
BccI CCATC 5 cut(s) 179, 231, 412, 991, 1208
BceAI ACGGC 2 cut(s) 1195, 1280
BciVI GTATCC 1 cut(s) 590
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 909, 1041
BfaI CTAG 4 cut(s) 42, 75, 269, 276
BfmI CTRYAG 1 cut(s) 376
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 2 cut(s) 545, 1262
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 2 cut(s) 546, 1263
BmeRI GACNNNNNGTC 1 cut(s) 1190
BmgBI CACGTC 3 cut(s) 136, 296, 425
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 4 cut(s) 47, 168, 764, 1012
BmsI GCATC 2 cut(s) 115, 736
BpiI GAAGAC 2 cut(s) 386, 685
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 41, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 559, 1278
Bse118I RCCGGY 1 cut(s) 1291
Bse3DI GCAATG 2 cut(s) 543, 730
Bse8I GATNNNNATC 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 41, 340
BseGI GGATG 3 cut(s) 434, 455, 490
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 425, 559, 1278
BseMI GCAATG 2 cut(s) 543, 730
BseX3I CGGCCG 1 cut(s) 1293
BseXI GCAGC 2 cut(s) 556, 1248
BseYI CCCAGC 1 cut(s) 573
BsgI GTGCAG 1 cut(s) 407
Bsh1285I CGRYCG 2 cut(s) 178, 1296
BshFI GGCC 4 cut(s) 470, 765, 966, 1295
BsiEI CGRYCG 2 cut(s) 178, 1296
BsiHKAI GWGCWC 2 cut(s) 258, 1005
BsiSI CCGG 1 cut(s) 1292
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 425, 559, 1278
BsmAI GTCTC 2 cut(s) 909, 1041
BsmBI CGTCTC 1 cut(s) 1041
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 4 cut(s) 470, 765, 966, 1295
Bsp1286I GDGCHC 2 cut(s) 258, 1005
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 5 cut(s) 127, 604, 649, 1010, 1109
BspACI CCGC 4 cut(s) 792, 803, 1182, 1272
BspANI GGCC 4 cut(s) 470, 765, 966, 1295
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 4 cut(s) 47, 168, 764, 1012
BspPI GGATC 4 cut(s) 599, 1005, 1018, 1117
BspQI GCTCTTC 1 cut(s) 1108
BsrDI GCAATG 2 cut(s) 543, 730
BsrFI RCCGGY 1 cut(s) 1291
BsrGI TGTACA 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 1291
BssECI CCNNGG 2 cut(s) 41, 340
BssMI GATC 5 cut(s) 127, 604, 649, 1010, 1109
BssT1I CCWWGG 2 cut(s) 41, 340
Bst4CI ACNGT 5 cut(s) 179, 351, 711, 1073, 1256
Bst6I CTCTTC 1 cut(s) 1108
BstAUI TGTACA 1 cut(s) 351
BstF5I GGATG 3 cut(s) 434, 455, 490
BstKTI GATC 5 cut(s) 130, 607, 652, 1013, 1112
BstMAI GTCTC 2 cut(s) 909, 1041
BstMBI GATC 5 cut(s) 127, 604, 649, 1010, 1109
BstMCI CGRYCG 2 cut(s) 178, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 253, 262, 887
BstNSI RCATGY 1 cut(s) 1028
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 556, 1248
BstV2I GAAGAC 2 cut(s) 386, 685
BstX2I RGATCY 2 cut(s) 604, 1010
BstYI RGATCY 2 cut(s) 604, 1010
BstZI CGGCCG 1 cut(s) 1293
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 4 cut(s) 470, 765, 966, 1295
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 3 cut(s) 136, 296, 425
BtsCI GGATG 3 cut(s) 434, 455, 490
CciI TCATGA 1 cut(s) 652
Cfr10I RCCGGY 1 cut(s) 1291
Cfr13I GGNCC 1 cut(s) 763
Csp6I GTAC 4 cut(s) 83, 352, 712, 835
CviAII CATG 8 cut(s) 262, 383, 458, 472, 481, 653, 968, 1025
CviQI GTAC 4 cut(s) 83, 352, 712, 835
DpnI GATC 5 cut(s) 129, 606, 651, 1012, 1111
DpnII GATC 5 cut(s) 127, 604, 649, 1010, 1109
DriI GACNNNNNGTC 1 cut(s) 1190
EaeI YGGCCR 2 cut(s) 468, 1293
EagI CGGCCG 1 cut(s) 1293
Eam1104I CTCTTC 1 cut(s) 1108
Eam1105I GACNNNNNGTC 1 cut(s) 1190
EarI CTCTTC 1 cut(s) 1108
EciI GGCGGA 1 cut(s) 1197
EclXI CGGCCG 1 cut(s) 1293
Eco130I CCWWGG 2 cut(s) 41, 340
Eco52I CGGCCG 1 cut(s) 1293
Eco57I CTGAAG 1 cut(s) 1089
EcoT14I CCWWGG 2 cut(s) 41, 340
EcoT22I ATGCAT 2 cut(s) 6, 108
ErhI CCWWGG 2 cut(s) 41, 340
Esp3I CGTCTC 1 cut(s) 1041
FaeI CATG 8 cut(s) 265, 386, 461, 475, 484, 656, 971, 1028
FalI AAGNNNNNCTT 2 cut(s) 902, 934
FaqI GGGAC 1 cut(s) 257
FatI CATG 8 cut(s) 261, 382, 457, 471, 480, 652, 967, 1024
FauI CCCGC 1 cut(s) 1279
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 545, 1262
FokI GGATG 3 cut(s) 441, 462, 497
Fsp4HI GCNGC 2 cut(s) 545, 1262
FspBI CTAG 4 cut(s) 42, 75, 269, 276
GluI GCNGC 2 cut(s) 545, 1262
GsaI CCCAGC 1 cut(s) 577
HaeIII GGCC 4 cut(s) 470, 765, 966, 1295
HapII CCGG 1 cut(s) 1292
Hin1II CATG 8 cut(s) 265, 386, 461, 475, 484, 656, 971, 1028
HincII GTYRAC 2 cut(s) 520, 1118
HindII GTYRAC 2 cut(s) 520, 1118
HinfI GANTC 9 cut(s) 92, 98, 290, 372, 391, 616, 656, 902, 1145
HpaII CCGG 1 cut(s) 1292
HphI GGTGA 1 cut(s) 1079
Hpy166II GTNNAC 3 cut(s) 416, 520, 1118
Hpy188I TCNGA 4 cut(s) 97, 601, 609, 649
Hpy188III TCNNGA 8 cut(s) 125, 131, 152, 222, 299, 620, 653, 1107
Hpy8I GTNNAC 3 cut(s) 416, 520, 1118
HpyAV CCTTC 3 cut(s) 489, 535, 956
HpyCH4III ACNGT 5 cut(s) 179, 351, 711, 1073, 1256
HpyCH4IV ACGT 3 cut(s) 135, 295, 424
HpyCH4V TGCA 9 cut(s) 4, 106, 388, 536, 544, 664, 705, 735, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 262, 887
HpySE526I ACGT 3 cut(s) 135, 295, 424
Hsp92II CATG 8 cut(s) 265, 386, 461, 475, 484, 656, 971, 1028
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 5 cut(s) 127, 604, 649, 1010, 1109
LguI GCTCTTC 1 cut(s) 1108
LmnI GCTCC 4 cut(s) 51, 261, 405, 1021
LpnPI CCDG 5 cut(s) 116, 284, 559, 745, 1092
Lsp1109I GCAGC 2 cut(s) 556, 1248
LweI GCATC 2 cut(s) 115, 736
MaeI CTAG 4 cut(s) 42, 75, 269, 276
MaeII ACGT 3 cut(s) 135, 295, 424
MaeIII GTNAC 2 cut(s) 970, 1067
MalI GATC 5 cut(s) 129, 606, 651, 1012, 1111
MboI GATC 5 cut(s) 127, 604, 649, 1010, 1109
MboII GAAGA 7 cut(s) 331, 381, 386, 614, 690, 1095, 1223
MflI RGATCY 2 cut(s) 604, 1010
MhlI GDGCHC 2 cut(s) 258, 1005
MlsI TGGCCA 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 400, 650
MmeI TCCRAC 3 cut(s) 73, 144, 632
MnlI CCTC 5 cut(s) 73, 564, 725, 1045, 1205
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 2 cut(s) 6, 108
MscI TGGCCA 1 cut(s) 470
MseI TTAA 3 cut(s) 932, 947, 1300
Msp20I TGGCCA 1 cut(s) 470
MspI CCGG 1 cut(s) 1292
Mva1269I GAATGC 1 cut(s) 707
MwoI GCNNNNNNNGC 3 cut(s) 253, 262, 887
NdeII GATC 5 cut(s) 127, 604, 649, 1010, 1109
NlaIII CATG 8 cut(s) 265, 386, 461, 475, 484, 656, 971, 1028
NlaIV GGNNCC 4 cut(s) 47, 168, 764, 1012
NmuCI GTSAC 2 cut(s) 970, 1067
NsiI ATGCAT 2 cut(s) 6, 108
NspI RCATGY 1 cut(s) 1028
PagI TCATGA 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 1 cut(s) 883
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 7 cut(s) 92, 98, 290, 372, 616, 902, 1145
PflMI CCANNNNNTGG 1 cut(s) 425
PkrI GCNGC 2 cut(s) 546, 1263
PleI GAGTC 2 cut(s) 399, 650
PpsI GAGTC 2 cut(s) 399, 650
PsiI TTATAA 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 573
PspN4I GGNNCC 4 cut(s) 47, 168, 764, 1012
PspPI GGNCC 1 cut(s) 763
PsuI RGATCY 2 cut(s) 604, 1010
RsaI GTAC 4 cut(s) 84, 353, 713, 836
RsaNI GTAC 4 cut(s) 83, 352, 712, 835
SapI GCTCTTC 1 cut(s) 1108
SaqAI TTAA 3 cut(s) 932, 947, 1300
SatI GCNGC 2 cut(s) 545, 1262
Sau3AI GATC 5 cut(s) 127, 604, 649, 1010, 1109
Sau96I GGNCC 1 cut(s) 763
SchI GAGTC 2 cut(s) 400, 650
SduI GDGCHC 2 cut(s) 258, 1005
SfaNI GCATC 2 cut(s) 115, 736
SfcI CTRYAG 1 cut(s) 376
SsiI CCGC 4 cut(s) 792, 803, 1182, 1272
SspI AATATT 3 cut(s) 1207, 1232, 1244
SspMI CTAG 4 cut(s) 42, 75, 269, 276
StyI CCWWGG 2 cut(s) 41, 340
TaaI ACNGT 5 cut(s) 179, 351, 711, 1073, 1256
TaiI ACGT 3 cut(s) 138, 298, 427
TaqI TCGA 7 cut(s) 15, 174, 699, 810, 1127, 1148, 1197
TaqII GACCGA 1 cut(s) 989
TatI WGTACW 2 cut(s) 351, 834
TfiI GAWTC 7 cut(s) 92, 98, 290, 372, 616, 902, 1145
Tru1I TTAA 3 cut(s) 932, 947, 1300
Tru9I TTAA 3 cut(s) 932, 947, 1300
TseFI GTSAC 2 cut(s) 970, 1067
TseI GCWGC 2 cut(s) 544, 1261
Tsp45I GTSAC 2 cut(s) 970, 1067
TspDTI ATGAA 2 cut(s) 303, 658
Van91I CCANNNNNTGG 1 cut(s) 425
XapI RAATTY 6 cut(s) 11, 737, 865, 979, 1123, 1153
XceI RCATGY 1 cut(s) 1028
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 1275
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 4 cut(s) 42, 75, 269, 276
Zsp2I ATGCAT 2 cut(s) 6, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.