Rw1G036680

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013721
Physical Location & Seq
Forward (+)
64548893 .. 64550236
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036680.1

Sequence Viewer

Length: 1344 bp
ATGCATACCAACTTCAGTAGGGTGGTAAACCCTAGCCTCCAACAACACATTAGAGCTAGTGAGGTACTCACGGGTTCAGATTCAATACATCATCAATGGGAGTGTCTTGATCTGGACGTGGCTTGTTTGGTTCTTGATAAGTTATTGGAATCCATCGACCGGGCTAGATTCGGTGTGGTTTGCAAAGAATGGGGTCGTCTTGCAAGAGCCTATAGGCGATTGTGTAAGCCAAAGGTGCTTCCCATGCTCCTAATCCCTGCAGACAACCATCACTACTATGGAATGAAGAACTCACGACTATCACTAGGGACTATTATGCACCAAGGATTACTGTACAGTGTTTCGAAACGAAGAATCTACCGCCGTGTGCAGAGTATTATGCTCCCATCAGTAGGTGAACCAGAACCAGAAACTGGATATAGCAGATACTATCGTGGATGTGGGCATGGTTGGGTGGCCATGATAGACACGGATGTGATATTTGGAAGTGAAACGACTATAACTCTCGTCAACCCTTTCACAACAGTAATATTGCCGTCTTTACCTCCTCTGAAACTCTATAACTCGGGTATCCCGAAAGTTATCTTGTCCGAAGATCCGACTTCGAATCCAGACCATTACGTTGTTGTAGCTTTCGCTGATGATTGTGCCTCCATGGATTTCATCAAAGGAAGACAAGGTTGGTATCATATCGATTGCAGACCATACCTCGCAGAGCCTGAGGATTACAATTTTACTGATGCTATATTTTACGGAGGCCAAATCTACATGGCTGATAGTTATTACGGGATAATTGCGGTGTTTGATTATAAAAGCAAACAACAAGTATACTTGGAAAAGATATACACACCACCGCCACCTGCTGCACGAGATGAATCCGAACGGGCATATCTTGTGGAATCAATCAATGGAGACATATTCTATATTCGACGGTTAACAACGTCAGGGTATTATAGTGATCTGACCGAGAGTTTTAGGGTTTTTAAGGTGGTGCTCAATGGAAGCACTGTGGAGCATGTTGAGGTAAAGAGCATTGGAGATGAGGCTCTGTTTGTTGGTGACAGTCATTCATTATCTTTTTTGGCTTCAAGCTCTTCAGGGTGTCAACCAAATTCAATTCACTTCACAGATGATTCGATAAATTTTTCCAAATATTTAAATAGCTATATACGACGAGTCATCACAATAAAATGCTACCAGGACGATGACGAGGACGAATATCAGGTACGAGCTGATATGGGTATCTTTCATTTAGAGGATGGAACTATTAGCCGATATTACCTAAAATGTTTTGACGATGACCTGCTACCACCCGCTTTTTGGATCATACCACCGGCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

447

Amino Acids

50.97

Weight (kDa)

5.54

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 130 - 385 6.7e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
AarI CACCTGC 1 cut(s) 868
Acc36I ACCTGC 2 cut(s) 868, 1311
AccB7I CCANNNNNTGG 1 cut(s) 413
AccI GTMKAC 1 cut(s) 828
AciI CCGC 4 cut(s) 361, 797, 854, 1314
AclWI GGATC 2 cut(s) 590, 1331
AcoI YGGCCR 2 cut(s) 456, 1335
AcsI RAATTY 2 cut(s) 1111, 1141
AcuI CTGAAG 1 cut(s) 1080
AfaI GTAC 3 cut(s) 66, 335, 1227
AfiI CCNNNNNNNGG 4 cut(s) 159, 392, 413, 1320
AgsI TTSAA 3 cut(s) 84, 1089, 1116
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 664, 696
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 5 cut(s) 56, 632, 1092, 1164, 1232
AluI AGCT 5 cut(s) 56, 632, 1092, 1164, 1232
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 1 cut(s) 906
AlwI GGATC 2 cut(s) 590, 1331
AlwNI CAGNNNCTG 2 cut(s) 413, 719
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 3 cut(s) 456, 757, 1335
ApeKI GCWGC 1 cut(s) 863
ApoI RAATTY 2 cut(s) 1111, 1141
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 407, 1070
AsuII TTCGAA 2 cut(s) 344, 605
AvaI CYCGRG 1 cut(s) 565
AxyI CCTNAGG 1 cut(s) 720
BaeI ACNNNNGTAYC 4 cut(s) 418, 451, 553, 586
BalI TGGCCA 1 cut(s) 458
BauI CACGAG 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 850
BccI CCATC 4 cut(s) 161, 276, 394, 1253
BceAI ACGGC 3 cut(s) 348, 520, 1322
BciT130I CCWGG 1 cut(s) 1199
BciVI GTATCC 1 cut(s) 581
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 4 cut(s) 33, 57, 165, 305
BfmI CTRYAG 2 cut(s) 211, 258
BfuAI ACCTGC 2 cut(s) 868, 1311
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 1 cut(s) 864
BlsI GCNGC 1 cut(s) 865
Bme1390I CCNGG 2 cut(s) 161, 1199
BmeT110I CYCGRG 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 161, 1199
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 679
Bpu14I TTCGAA 2 cut(s) 344, 605
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 322, 654
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 392, 413, 1320
Bse118I RCCGGY 1 cut(s) 1333
Bse1I ACTGG 1 cut(s) 418
Bse21I CCTNAGG 1 cut(s) 720
BseBI CCWGG 1 cut(s) 1199
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 322, 654
BseGI GGATG 3 cut(s) 443, 478, 1264
BseLI CCNNNNNNNGG 4 cut(s) 159, 392, 413, 1320
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 537
BseX3I CGGCCG 1 cut(s) 1335
BseXI GCAGC 1 cut(s) 850
BsgI GTGCAG 2 cut(s) 389, 849
Bsh1285I CGRYCG 2 cut(s) 160, 1338
BshFI GGCC 3 cut(s) 458, 759, 1337
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 2 cut(s) 160, 1338
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 2 cut(s) 160, 1334
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 4 cut(s) 159, 392, 413, 1320
BsmAI GTCTC 1 cut(s) 906
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 3 cut(s) 458, 759, 1337
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 2 cut(s) 344, 605
Bsp1286I GDGCHC 1 cut(s) 996
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 109, 595, 958, 1323
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 4 cut(s) 361, 797, 854, 1314
BspANI GGCC 3 cut(s) 458, 759, 1337
BspCNI CTCAG 1 cut(s) 712
BspDI ATCGAT 1 cut(s) 693
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 2 cut(s) 868, 1311
BspPI GGATC 2 cut(s) 590, 1331
BspQI GCTCTTC 1 cut(s) 1099
BspT104I TTCGAA 2 cut(s) 344, 605
BsrFI RCCGGY 1 cut(s) 1333
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 1333
BssECI CCNNGG 2 cut(s) 322, 654
BssMI GATC 4 cut(s) 109, 595, 958, 1323
BssNAI GTATAC 1 cut(s) 829
BssSI CACGAG 1 cut(s) 867
BssT1I CCWWGG 2 cut(s) 322, 654
Bst1107I GTATAC 1 cut(s) 829
Bst2BI CACGAG 1 cut(s) 867
Bst2UI CCWGG 1 cut(s) 1199
Bst4CI ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
Bst6I CTCTTC 1 cut(s) 1099
BstAUI TGTACA 1 cut(s) 333
BstBI TTCGAA 2 cut(s) 344, 605
BstDEI CTNAG 1 cut(s) 720
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 3 cut(s) 443, 478, 1264
BstKTI GATC 4 cut(s) 112, 598, 961, 1326
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 4 cut(s) 109, 595, 958, 1323
BstMCI CGRYCG 2 cut(s) 160, 1338
BstMWI GCNNNNNNNGC 2 cut(s) 235, 244
BstNI CCWGG 1 cut(s) 1199
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 2 cut(s) 159, 1197
BstSFI CTRYAG 2 cut(s) 211, 258
BstV1I GCAGC 1 cut(s) 850
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 829
BstZI CGGCCG 1 cut(s) 1335
Bsu15I ATCGAT 1 cut(s) 693
Bsu36I CCTNAGG 1 cut(s) 720
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 3 cut(s) 458, 759, 1337
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 654
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 443, 478, 1264
BtsIMutI CAGTG 2 cut(s) 343, 1005
BveI ACCTGC 2 cut(s) 868, 1311
CaiI CAGNNNCTG 2 cut(s) 413, 719
Cfr10I RCCGGY 1 cut(s) 1333
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 3 cut(s) 65, 334, 1226
CviAII CATG 6 cut(s) 244, 446, 460, 655, 769, 1016
CviQI GTAC 3 cut(s) 65, 334, 1226
DdeI CTNAG 1 cut(s) 720
DpnI GATC 4 cut(s) 111, 597, 960, 1325
DpnII GATC 4 cut(s) 109, 595, 958, 1323
DraI TTTAAA 1 cut(s) 1158
EaeI YGGCCR 2 cut(s) 456, 1335
EagI CGGCCG 1 cut(s) 1335
Eam1104I CTCTTC 1 cut(s) 1099
EarI CTCTTC 1 cut(s) 1099
EclXI CGGCCG 1 cut(s) 1335
Eco130I CCWWGG 2 cut(s) 322, 654
Eco52I CGGCCG 1 cut(s) 1335
Eco57I CTGAAG 1 cut(s) 1080
Eco81I CCTNAGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 1197
EcoT14I CCWWGG 2 cut(s) 322, 654
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 322, 654
FaeI CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
FaqI GGGAC 1 cut(s) 322
FatI CATG 6 cut(s) 243, 445, 459, 654, 768, 1015
FauI CCCGC 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 864
FokI GGATG 3 cut(s) 450, 485, 1271
Fsp4HI GCNGC 1 cut(s) 864
FspBI CTAG 4 cut(s) 33, 57, 165, 305
GluI GCNGC 1 cut(s) 864
HaeIII GGCC 3 cut(s) 458, 759, 1337
HapII CCGG 2 cut(s) 160, 1334
Hin1II CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
HincII GTYRAC 3 cut(s) 511, 936, 1106
HindII GTYRAC 3 cut(s) 511, 936, 1106
HinfI GANTC 9 cut(s) 80, 149, 168, 354, 607, 875, 899, 1133, 1176
HpaI GTTAAC 1 cut(s) 936
HpaII CCGG 2 cut(s) 160, 1334
HphI GGTGA 2 cut(s) 407, 1070
Hpy166II GTNNAC 6 cut(s) 28, 398, 511, 829, 936, 1106
Hpy188I TCNGA 6 cut(s) 79, 552, 592, 600, 880, 963
Hpy188III TCNNGA 6 cut(s) 107, 113, 134, 294, 574, 611
Hpy8I GTNNAC 6 cut(s) 28, 398, 511, 829, 936, 1106
Hpy99I CGWCG 2 cut(s) 933, 1176
HpyCH4III ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
HpyCH4IV ACGT 3 cut(s) 117, 621, 941
HpyCH4V TGCA 8 cut(s) 4, 183, 203, 260, 319, 370, 699, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 244
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 3 cut(s) 117, 621, 941
Hsp92II CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
KspAI GTTAAC 1 cut(s) 936
Kzo9I GATC 4 cut(s) 109, 595, 958, 1323
LguI GCTCTTC 1 cut(s) 1099
LmnI GCTCC 3 cut(s) 252, 387, 1012
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 1 cut(s) 730
MaeI CTAG 4 cut(s) 33, 57, 165, 305
MaeII ACGT 3 cut(s) 117, 621, 941
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 4 cut(s) 111, 597, 960, 1325
MboI GATC 4 cut(s) 109, 595, 958, 1323
MboII GAAGA 5 cut(s) 298, 363, 605, 684, 1086
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 996
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 5 cut(s) 730, 792, 1111, 1116, 1141
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 1 cut(s) 1185
MmeI TCCRAC 2 cut(s) 64, 623
Mox20I TGGCCA 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 458
MseI TTAA 3 cut(s) 935, 984, 1157
MslI CAYNNNNRTG 2 cut(s) 276, 473
Msp20I TGGCCA 1 cut(s) 458
MspI CCGG 2 cut(s) 160, 1334
MspR9I CCNGG 2 cut(s) 161, 1199
MvaI CCWGG 1 cut(s) 1199
MwoI GCNNNNNNNGC 2 cut(s) 235, 244
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 109, 595, 958, 1323
NlaIII CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 2 cut(s) 344, 605
OliI CACNNNNGTG 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 1099
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PfeI GAWTC 8 cut(s) 80, 149, 168, 354, 607, 875, 899, 1133
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 1 cut(s) 865
PleI GAGTC 1 cut(s) 1184
PpsI GAGTC 1 cut(s) 1184
PsiI TTATAA 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 1197
PspGI CCWGG 1 cut(s) 1197
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 2 cut(s) 413, 719
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 66, 335, 1227
RsaNI GTAC 3 cut(s) 65, 334, 1226
RseI CAYNNNNRTG 2 cut(s) 276, 473
SapI GCTCTTC 1 cut(s) 1099
SaqAI TTAA 3 cut(s) 935, 984, 1157
SatI GCNGC 1 cut(s) 864
Sau3AI GATC 4 cut(s) 109, 595, 958, 1323
SchI GAGTC 1 cut(s) 1185
ScrFI CCNGG 2 cut(s) 161, 1199
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 2 cut(s) 211, 258
SfuI TTCGAA 2 cut(s) 344, 605
SmiI ATTTAAAT 1 cut(s) 1158
SmiMI CAYNNNNRTG 2 cut(s) 276, 473
Sse9I AATT 5 cut(s) 730, 792, 1111, 1116, 1141
SsiI CCGC 4 cut(s) 361, 797, 854, 1314
SspI AATATT 2 cut(s) 531, 1154
SspMI CTAG 4 cut(s) 33, 57, 165, 305
StyD4I CCNGG 2 cut(s) 159, 1197
StyI CCWWGG 2 cut(s) 322, 654
SwaI ATTTAAAT 1 cut(s) 1158
TaaI ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
TaiI ACGT 3 cut(s) 120, 624, 944
TaqI TCGA 6 cut(s) 156, 344, 605, 693, 928, 1136
TaqII GACCGA 1 cut(s) 980
TasI AATT 5 cut(s) 730, 792, 1111, 1116, 1141
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 8 cut(s) 80, 149, 168, 354, 607, 875, 899, 1133
Tru1I TTAA 3 cut(s) 935, 984, 1157
Tru9I TTAA 3 cut(s) 935, 984, 1157
TscAI CASTG 2 cut(s) 343, 1012
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 1 cut(s) 863
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 5 cut(s) 299, 652, 888, 1059, 1238
TspGWI ACGGA 2 cut(s) 485, 768
TspRI CASTG 2 cut(s) 343, 1012
Van91I CCANNNNNTGG 1 cut(s) 413
XapI RAATTY 2 cut(s) 1111, 1141
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 1317
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 4 cut(s) 33, 57, 165, 305
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.