Rh1CG391000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013721
Physical Location & Seq
Forward (+)
65944721 .. 65945861
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG391000.1

Sequence Viewer

Length: 1005 bp
ATGCATCATCAATGGGAATGTCTTGATCAGGACGTGGTGTTTTTGGTTCTTGATAAGTTGTTGGAACCCATCGACCGTGCTAGTTTCGGTGTGGTTTGCAAAGAATGGGGTCGTCTTGCAAGAGCCTATAAGCGATGGTGTAAGCGAAAGGTGCTTCCCATGCTCCTTATCCCTAGCAACTACGATGAATCACGTCAGGAATGGCGTTATGGAAAGAAGAGAAGACGACCAAAGCACCAAGGATTACTGTACAGCATTTTGGAACGAAGAATCTACAGCAATGTGCAGAGTATTATGCTCCCATCAGTGAGTAAACCAAGACATGGCTGTAGCAGATACTATCGTGGATGTGGTCATGGTTGGGTGGCCATGATAGACATGAATGAGTTCAGAAGGGAAGCGATTATAACTCTCGTCAACCCCTTCACAACAGCAATGTTGCAGTCTTTCCCTCCTTTGAAAGTCCATGGCTGGGGTATCCCAAAAGTTATCTTGTCCGAAGATCCGACTTTGAATCAAGACAATTATGTGGTCGTAGCTTTCTCTGATGGTGACTGCTTGGATTTCATCAAAGGAAGACAAGATTGGTATCATATCGAATTCAAACCGTACTTCGCAGAGTTTGATCTTTGCAAATTTACTGATGCTATATTTTACAGAGGCCAAATCTATATAGCTGATAATTGTTTGGGAATAATTGCGGTGTCCGATTACAAAAGCAAACAACAAATGTATTTGGAAAAGTTATGCACAGTACCATTCCAAAATTTATCACAACAAGCTGAACGAGCATATCTTGTGGAATCAATCAAGGGAGACTTGTTGTATATTCGAAGATTTACAACATTTAAGAGTTCAGACGAAGGCCAGGTGACCGAGAATTTTAGGGTATATAAGATGGTGCTCAATGGATCCATTATGGAGTTTGTTGAGATAACTACGGCGGACGACCAGTCCTCGACGAGAATATTGAAGTACAAGTTGATATGGGCATCTTCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

334

Amino Acids

39.21

Weight (kDa)

8.91

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 99 - 318 5.7e-26 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 2 cut(s) 701, 944
AclWI GGATC 3 cut(s) 497, 906, 919
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 4 cut(s) 599, 635, 766, 880
AfaI GTAC 4 cut(s) 251, 611, 756, 977
AfiI CCNNNNNNNGG 2 cut(s) 323, 472
AgsI TTSAA 4 cut(s) 460, 514, 604, 973
AhdI GACNNNNNGTC 1 cut(s) 952
AjiI CACGTC 2 cut(s) 34, 194
AjnI CCWGG 1 cut(s) 867
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 3 cut(s) 539, 677, 782
AluI AGCT 3 cut(s) 539, 677, 782
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 3 cut(s) 497, 906, 919
AoxI GGCC 3 cut(s) 366, 661, 865
ApoI RAATTY 4 cut(s) 599, 635, 766, 880
Asp700I GAANNNNTTC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 563, 883
AsuII TTCGAA 1 cut(s) 832
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 229, 583
Bbv12I GWGCWC 1 cut(s) 906
BccI CCATC 5 cut(s) 77, 129, 310, 542, 892
BceAI ACGGC 1 cut(s) 957
BciT130I CCWGG 1 cut(s) 869
BciVI GTATCC 1 cut(s) 488
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 3 cut(s) 81, 174, 1003
BfmI CTRYAG 2 cut(s) 274, 328
BfuI GTATCC 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 869
BmeRI GACNNNNNGTC 1 cut(s) 952
BmgBI CACGTC 2 cut(s) 34, 194
BmiI GGNNCC 2 cut(s) 66, 913
BmrFI CCNGG 1 cut(s) 869
BmsI GCATC 3 cut(s) 13, 634, 1001
BpiI GAAGAC 2 cut(s) 229, 583
Bpu14I TTCGAA 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 238, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 472
Bse1I ACTGG 1 cut(s) 952
Bse3DI GCAATG 2 cut(s) 286, 441
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 1 cut(s) 869
BseDI CCNNGG 2 cut(s) 238, 466
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 323, 472
BseMI GCAATG 2 cut(s) 286, 441
BseNI ACTGG 1 cut(s) 952
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 368, 663, 867
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 906
BslI CCNNNNNNNGG 2 cut(s) 323, 472
BsmAI GTCTC 1 cut(s) 810
BsnI GGCC 3 cut(s) 368, 663, 867
Bsp119I TTCGAA 1 cut(s) 832
Bsp1286I GDGCHC 1 cut(s) 906
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 4 cut(s) 25, 502, 625, 911
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 2 cut(s) 701, 944
BspANI GGCC 3 cut(s) 368, 663, 867
BspLI GGNNCC 2 cut(s) 66, 913
BspPI GGATC 3 cut(s) 497, 906, 919
BspT104I TTCGAA 1 cut(s) 832
BsrDI GCAATG 2 cut(s) 286, 441
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 2 cut(s) 238, 466
BssMI GATC 4 cut(s) 25, 502, 625, 911
BssT1I CCWWGG 2 cut(s) 238, 466
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 4 cut(s) 77, 249, 609, 754
Bst6I CTCTTC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 832
BstDSI CCRYGG 1 cut(s) 466
BstEII GGTNACC 1 cut(s) 871
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 4 cut(s) 28, 505, 628, 914
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 4 cut(s) 25, 502, 625, 911
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 151, 160, 788
BstNI CCWGG 1 cut(s) 869
BstPI GGTNACC 1 cut(s) 871
BstSCI CCNGG 1 cut(s) 867
BstSFI CTRYAG 2 cut(s) 274, 328
BstV2I GAAGAC 2 cut(s) 229, 583
BstX2I RGATCY 2 cut(s) 502, 911
BstYI RGATCY 2 cut(s) 502, 911
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 3 cut(s) 368, 663, 867
BtgI CCRYGG 1 cut(s) 466
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 2 cut(s) 34, 194
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 312
Csp6I GTAC 4 cut(s) 250, 610, 755, 976
CviAII CATG 6 cut(s) 160, 323, 356, 370, 379, 467
CviJI RGCY 9 cut(s) 125, 327, 368, 471, 539, 663, 677, 782, 867
CviKI_1 RGCY 9 cut(s) 125, 327, 368, 471, 539, 663, 677, 782, 867
CviQI GTAC 4 cut(s) 250, 610, 755, 976
DpnI GATC 4 cut(s) 27, 504, 627, 913
DpnII GATC 4 cut(s) 25, 502, 625, 911
DriI GACNNNNNGTC 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 952
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 959
Eco130I CCWWGG 2 cut(s) 238, 466
Eco91I GGTNACC 1 cut(s) 871
EcoO65I GGTNACC 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 238, 466
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 238, 466
FaeI CATG 6 cut(s) 163, 326, 359, 373, 382, 470
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FatI CATG 6 cut(s) 159, 322, 355, 369, 378, 466
FbaI TGATCA 1 cut(s) 25
FokI GGATG 1 cut(s) 360
FspBI CTAG 3 cut(s) 81, 174, 1003
GsaI CCCAGC 1 cut(s) 475
HaeIII GGCC 3 cut(s) 368, 663, 867
Hin1II CATG 6 cut(s) 163, 326, 359, 373, 382, 470
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 4 cut(s) 188, 270, 514, 803
HphI GGTGA 2 cut(s) 563, 883
Hpy166II GTNNAC 2 cut(s) 314, 418
Hpy188I TCNGA 6 cut(s) 392, 499, 507, 547, 709, 859
Hpy188III TCNNGA 5 cut(s) 23, 29, 50, 197, 518
Hpy8I GTNNAC 2 cut(s) 314, 418
Hpy99I CGWCG 1 cut(s) 964
HpyAV CCTTC 3 cut(s) 387, 433, 857
HpyCH4III ACNGT 4 cut(s) 77, 249, 609, 754
HpyCH4IV ACGT 2 cut(s) 33, 193
HpyCH4V TGCA 7 cut(s) 4, 99, 119, 286, 442, 633, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 160, 788
HpySE526I ACGT 2 cut(s) 33, 193
Hsp92II CATG 6 cut(s) 163, 326, 359, 373, 382, 470
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 25, 502, 625, 911
LmnI GCTCC 2 cut(s) 168, 303
LpnPI CCDG 6 cut(s) 14, 182, 457, 854, 881, 965
LweI GCATC 3 cut(s) 13, 634, 1001
MaeI CTAG 3 cut(s) 81, 174, 1003
MaeII ACGT 2 cut(s) 33, 193
MaeIII GTNAC 2 cut(s) 551, 871
MalI GATC 4 cut(s) 27, 504, 627, 913
MboI GATC 4 cut(s) 25, 502, 625, 911
MboII GAAGA 7 cut(s) 229, 234, 279, 512, 588, 846, 987
MflI RGATCY 2 cut(s) 502, 911
MhlI GDGCHC 1 cut(s) 906
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 7 cut(s) 523, 599, 635, 682, 696, 766, 880
MluNI TGGCCA 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 42, 530
MnlI CCTC 3 cut(s) 462, 653, 967
Mox20I TGGCCA 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 869
MvaI CCWGG 1 cut(s) 869
MwoI GCNNNNNNNGC 3 cut(s) 151, 160, 788
NcoI CCATGG 1 cut(s) 466
NdeII GATC 4 cut(s) 25, 502, 625, 911
NlaIII CATG 6 cut(s) 163, 326, 359, 373, 382, 470
NlaIV GGNNCC 2 cut(s) 66, 913
NmuCI GTSAC 2 cut(s) 551, 871
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 4 cut(s) 188, 270, 514, 803
PflMI CCANNNNNTGG 1 cut(s) 323
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 867
PspEI GGTNACC 1 cut(s) 871
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 66, 913
PsuI RGATCY 2 cut(s) 502, 911
RsaI GTAC 4 cut(s) 251, 611, 756, 977
RsaNI GTAC 4 cut(s) 250, 610, 755, 976
SaqAI TTAA 1 cut(s) 849
Sau3AI GATC 4 cut(s) 25, 502, 625, 911
ScrFI CCNGG 1 cut(s) 869
SduI GDGCHC 1 cut(s) 906
SetI ASST 7 cut(s) 36, 153, 196, 541, 679, 784, 873
SfaNI GCATC 3 cut(s) 13, 634, 1001
SfcI CTRYAG 2 cut(s) 274, 328
SfuI TTCGAA 1 cut(s) 832
Sse9I AATT 7 cut(s) 523, 599, 635, 682, 696, 766, 880
SsiI CCGC 2 cut(s) 701, 944
SspI AATATT 1 cut(s) 969
SspMI CTAG 3 cut(s) 81, 174, 1003
StyD4I CCNGG 1 cut(s) 867
StyI CCWWGG 2 cut(s) 238, 466
TaaI ACNGT 4 cut(s) 77, 249, 609, 754
TaiI ACGT 2 cut(s) 36, 196
TaqI TCGA 4 cut(s) 72, 597, 832, 959
TaqII GACCGA 1 cut(s) 890
TasI AATT 7 cut(s) 523, 599, 635, 682, 696, 766, 880
TatI WGTACW 2 cut(s) 249, 975
TfiI GAWTC 4 cut(s) 188, 270, 514, 803
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 551, 871
Tsp45I GTSAC 2 cut(s) 551, 871
TspDTI ATGAA 3 cut(s) 201, 395, 556
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 4 cut(s) 599, 635, 766, 880
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 3 cut(s) 81, 174, 1003
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.