Rh1CG391200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013721
Physical Location & Seq
Forward (+)
65954899 .. 65955501
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG391200.1

Sequence Viewer

Length: 603 bp
ATGGCTGATAATTGTTTTGGAATAATTGCGGTGTTCGATTACAAAAGCAAACAACAAATGTACTTGGAAAAGTTATGCACACCATTCCAAAATTTATCACAACGAGCTGAACGAGCATATCTTGTGGAATCAATCAAGGGAGACTTGTTGTATATTCGAAGATTTACAACATTAAAGAGTTTAGACGAAGGCCATGTGACCGAGAATTTTAGGGTATATAAGATGGTGCTCAATGGATCCATTGTGGAGCATGTTGAGGTAAAGAGCATTGGAGACGAGGCTTTGTTTGTTGGTGACAGTCATTCAATATCTTTATTGGCTTCAAGCTCTTCAGGATCGTGTCAACCAAATTCGATTTACTTTACAGATGATTCGATAAATTTTTGCCTATATTTAGATAACTACGGCGGACTACAAGTCCTCGACAAGAATATTGAAGTACAAGTTGATATGGGCATCTTCCATTTAGAGGATGGAACTATTAGCCAATATTACCCAAAATATTCCTTTGACAGAGCTGCTACCACCCGCTTTTTGGATTATACCACCGGCCGTTTAATGGACTCTGCTAGCTACCCGTCGTTCTGGTTCATAGTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

200

Amino Acids

22.73

Weight (kDa)

4.92

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 8 - 131 1.5e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 408, 529
AclWI GGATC 3 cut(s) 231, 244, 343
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 4 cut(s) 91, 205, 349, 379
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 62, 441
AfiI CCNNNNNNNGG 3 cut(s) 469, 535, 559
AgsI TTSAA 3 cut(s) 306, 324, 437
AhdI GACNNNNNGTC 1 cut(s) 416
AluBI AGCT 4 cut(s) 107, 327, 518, 573
AluI AGCT 4 cut(s) 107, 327, 518, 573
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 135, 267
AlwI GGATC 3 cut(s) 231, 244, 343
AoxI GGCC 2 cut(s) 190, 550
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 4 cut(s) 91, 205, 349, 379
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 157
AsuNHI GCTAGC 1 cut(s) 569
BamHI GGATCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 505
BccI CCATC 2 cut(s) 217, 467
BceAI ACGGC 2 cut(s) 421, 537
BcoDI GTCTC 2 cut(s) 135, 267
BfaI CTAG 1 cut(s) 570
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
BmeRI GACNNNNNGTC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 465
BmtI GCTAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 469, 535, 559
Bse118I RCCGGY 1 cut(s) 548
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 469, 535, 559
BseX3I CGGCCG 1 cut(s) 550
BseXI GCAGC 1 cut(s) 505
Bsh1285I CGRYCG 1 cut(s) 553
BshFI GGCC 2 cut(s) 192, 552
BsiEI CGRYCG 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 549
BslI CCNNNNNNNGG 3 cut(s) 469, 535, 559
BsmAI GTCTC 2 cut(s) 135, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 192, 552
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 236, 335
BspACI CCGC 3 cut(s) 29, 408, 529
BspANI GGCC 2 cut(s) 192, 552
BspLI GGNNCC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 3 cut(s) 231, 244, 343
BspQI GCTCTTC 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssMI GATC 2 cut(s) 236, 335
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 571
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 2 cut(s) 239, 338
BstMAI GTCTC 2 cut(s) 135, 267
BstMBI GATC 2 cut(s) 236, 335
BstMCI CGRYCG 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 505
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 550
BsuRI GGCC 2 cut(s) 192, 552
BtsCI GGATG 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 548
Csp6I GTAC 2 cut(s) 61, 440
CviAII CATG 2 cut(s) 194, 251
CviQI GTAC 2 cut(s) 61, 440
DpnI GATC 2 cut(s) 238, 337
DpnII GATC 2 cut(s) 236, 335
DriI GACNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 550
EagI CGGCCG 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 423
EclXI CGGCCG 1 cut(s) 550
Eco52I CGGCCG 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 2 cut(s) 197, 254
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 2 cut(s) 193, 250
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 1 cut(s) 570
GluI GCNGC 1 cut(s) 519
HaeIII GGCC 2 cut(s) 192, 552
HapII CCGG 1 cut(s) 549
Hin1II CATG 2 cut(s) 197, 254
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 3 cut(s) 128, 371, 563
HpaII CCGG 1 cut(s) 549
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 1 cut(s) 344
Hpy99I CGWCG 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 197, 254
Kzo9I GATC 2 cut(s) 236, 335
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 3 cut(s) 318, 562, 571
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 196, 293
MalI GATC 2 cut(s) 238, 337
MboI GATC 2 cut(s) 236, 335
MboII GAAGA 3 cut(s) 171, 321, 451
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 6 cut(s) 10, 24, 91, 205, 349, 379
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 4 cut(s) 250, 271, 431, 463
MseI TTAA 2 cut(s) 173, 557
MspI CCGG 1 cut(s) 549
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 236, 335
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 2 cut(s) 197, 254
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 196, 293
NspI RCATGY 1 cut(s) 254
NspV TTCGAA 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PfeI GAWTC 2 cut(s) 128, 371
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 2 cut(s) 62, 441
RsaNI GTAC 2 cut(s) 61, 440
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 173, 557
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 2 cut(s) 236, 335
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 109, 261, 329, 520, 575
SfaNI GCATC 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 157
Sse9I AATT 6 cut(s) 10, 24, 91, 205, 349, 379
SsiI CCGC 3 cut(s) 29, 408, 529
SspI AATATT 3 cut(s) 433, 491, 503
SspMI CTAG 1 cut(s) 570
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 5 cut(s) 36, 157, 353, 374, 423
TaqII GACCGA 1 cut(s) 215
TasI AATT 6 cut(s) 10, 24, 91, 205, 349, 379
TatI WGTACW 2 cut(s) 60, 439
TfiI GAWTC 2 cut(s) 128, 371
Tru1I TTAA 2 cut(s) 173, 557
Tru9I TTAA 2 cut(s) 173, 557
TseFI GTSAC 2 cut(s) 196, 293
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 2 cut(s) 196, 293
TspDTI ATGAA 1 cut(s) 580
XapI RAATTY 4 cut(s) 91, 205, 349, 379
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 470, 532
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.