Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0013721

Physical Location & Seq

Genomic Coordinates Reverse (-)

103209 .. 104309

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgctcctaatccctgcagacaaccatcactactatggaatgaagaactcacgactatcactagggactattatgcaccaaggattactgtacagtgtttcgaaacgaagaatctaccgccgtgtgcagagtattatgctcccatcagtaggtgaaccagaaccagaaactggatatagcagatactatcgtggatgtgggcatggttgggtggccatgatagccacggatgtgatatttggaagtgaaacgactataactctcgtcaaccctttcacaacagtaatattgccgtctttacctcctctgaaactctataactcgggtatcccaaaagttatcttgtccgaagatccgacttcgaatccagaccattacgttgttgtagctttcgctgatgattgtgcctccatggatttcatcaaaggaagacaaggttggtatcatatcgattgcagaccatacctcgcagagcctgatgattacaattttactgatgctatattttacggaggccaaatctacatggctgatagttattacgggataattgcggtgtttgattataaaagcaaacaacaagtatacttggaaaagatatacacaccaccgccacctgctgcacgagatgaatccgaacgggcatatcttgtggaatcaatcaatggagacatattctatattcgacggttaacaacgtcagggtattatagtgatctgaccgagagttttagggtttttaaggtggtgctcaatggaagcactgtggagcatgttgaggtaaagagcattggagatgaggctctgtttgttggtgacagtcattcattatcttttttggcttcaagctcttcagggtgtcaaccaaattcaattcacttcacagatgattcgataaatttttccaaatatttaaatagctatatacgacgagtcatcacaataaaatgctaccaggacgatgacgaggacgaatatcaggtacgagctgatatgggtatctttcatttagaggatggaactattagccgatattacctaaaatgttttgacgatgacctgctaccacccgctttttggatcataccaccggccgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

366

Amino Acids

41.61

Weight (kDa)

5.05

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29280
rosa_laevigata	RLG00000026549
rosa_multiflora	Rmu_ssc0000155.1_g000023 Rmu_ssc0000155.1_g000024 Rmu_ssc0000155.1_g000026 Rmu_ssc0000155.1_g000027
rosa_roxburghii	Rroxscaffold_4G00281520 Rroxscaffold_4G00281530
rosa_rugosa	Rorug01G0401000 Rorug01G0401000
rosa_samantha	Rh1AG417800 Rh1AG417900 Rh1BG377200 Rh1CG391000 Rh1CG391100 Rh1CG391200
rosa_wichuraiana	Rw1G036680 Rw1G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	2 cut(s)	625, 1068
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	4 cut(s)	118, 554, 611, 1071
AclWI	GGATC	2 cut(s)	347, 1088
AcoI	YGGCCR	2 cut(s)	213, 1092
AcsI	RAATTY	2 cut(s)	868, 898
AcuI	CTGAAG	1 cut(s)	837
AfaI	GTAC	2 cut(s)	92, 984
AfiI	CCNNNNNNNGG	3 cut(s)	149, 170, 1077
AgsI	TTSAA	2 cut(s)	846, 873
AjnI	CCWGG	1 cut(s)	954
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	389, 849, 921, 989
AluI	AGCT	4 cut(s)	389, 849, 921, 989
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	2 cut(s)	347, 1088
AlwNI	CAGNNNCTG	2 cut(s)	170, 476
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	213, 514, 1092
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	2 cut(s)	868, 898
AsuHPI	GGTGA	2 cut(s)	164, 827
AsuII	TTCGAA	2 cut(s)	101, 362
AvaI	CYCGRG	1 cut(s)	322
BaeI	ACNNNNGTAYC	4 cut(s)	175, 208, 310, 343
BalI	TGGCCA	1 cut(s)	215
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	3 cut(s)	33, 151, 1010
BceAI	ACGGC	3 cut(s)	105, 277, 1079
BciT130I	CCWGG	1 cut(s)	956
BciVI	GTATCC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	2 cut(s)	625, 1068
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
Bme1390I	CCNGG	1 cut(s)	956
BmeT110I	CYCGRG	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	1 cut(s)	436
Bpu14I	TTCGAA	2 cut(s)	101, 362
Bsa29I	ATCGAT	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	79, 225, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 170, 1077
Bse118I	RCCGGY	1 cut(s)	1090
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	956
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	79, 225, 411
BseGI	GGATG	3 cut(s)	200, 235, 1021
BseLI	CCNNNNNNNGG	3 cut(s)	149, 170, 1077
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	294
BseX3I	CGGCCG	1 cut(s)	1092
BseXI	GCAGC	1 cut(s)	607
BsgI	GTGCAG	2 cut(s)	146, 606
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	3 cut(s)	215, 516, 1094
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	1091
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	149, 170, 1077
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	215, 516, 1094
BsoBI	CYCGRG	1 cut(s)	322
Bsp119I	TTCGAA	2 cut(s)	101, 362
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	352, 715, 1080
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	4 cut(s)	118, 554, 611, 1071
BspANI	GGCC	3 cut(s)	215, 516, 1094
BspDI	ATCGAT	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	2 cut(s)	625, 1068
BspPI	GGATC	2 cut(s)	347, 1088
BspQI	GCTCTTC	1 cut(s)	856
BspT104I	TTCGAA	2 cut(s)	101, 362
BsrFI	RCCGGY	1 cut(s)	1090
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	1090
BssECI	CCNNGG	3 cut(s)	79, 225, 411
BssMI	GATC	3 cut(s)	352, 715, 1080
BssNAI	GTATAC	1 cut(s)	586
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	79, 411
Bst1107I	GTATAC	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	6 cut(s)	90, 95, 283, 690, 766, 821
Bst6I	CTCTTC	1 cut(s)	856
BstAUI	TGTACA	1 cut(s)	90
BstBI	TTCGAA	2 cut(s)	101, 362
BstDSI	CCRYGG	2 cut(s)	225, 411
BstF5I	GGATG	3 cut(s)	200, 235, 1021
BstKTI	GATC	3 cut(s)	355, 718, 1083
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	3 cut(s)	352, 715, 1080
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	956
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZ17I	GTATAC	1 cut(s)	586
BstZI	CGGCCG	1 cut(s)	1092
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	215, 516, 1094
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	225, 411
BtsCI	GGATG	3 cut(s)	200, 235, 1021
BtsIMutI	CAGTG	2 cut(s)	100, 762
BveI	ACCTGC	2 cut(s)	625, 1068
CaiI	CAGNNNCTG	2 cut(s)	170, 476
Cfr10I	RCCGGY	1 cut(s)	1090
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	91, 983
CviAII	CATG	5 cut(s)	203, 217, 412, 526, 773
CviQI	GTAC	2 cut(s)	91, 983
DpnI	GATC	3 cut(s)	354, 717, 1082
DpnII	GATC	3 cut(s)	352, 715, 1080
DraI	TTTAAA	1 cut(s)	915
EaeI	YGGCCR	2 cut(s)	213, 1092
EagI	CGGCCG	1 cut(s)	1092
Eam1104I	CTCTTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	856
EclXI	CGGCCG	1 cut(s)	1092
Eco130I	CCWWGG	2 cut(s)	79, 411
Eco52I	CGGCCG	1 cut(s)	1092
Eco57I	CTGAAG	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	954
EcoT14I	CCWWGG	2 cut(s)	79, 411
ErhI	CCWWGG	2 cut(s)	79, 411
FaeI	CATG	5 cut(s)	206, 220, 415, 529, 776
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	202, 216, 411, 525, 772
FauI	CCCGC	1 cut(s)	1078
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	3 cut(s)	207, 242, 1028
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	215, 516, 1094
HapII	CCGG	1 cut(s)	1091
Hin1II	CATG	5 cut(s)	206, 220, 415, 529, 776
HincII	GTYRAC	3 cut(s)	268, 693, 863
HindII	GTYRAC	3 cut(s)	268, 693, 863
HinfI	GANTC	6 cut(s)	111, 364, 632, 656, 890, 933
HpaI	GTTAAC	1 cut(s)	693
HpaII	CCGG	1 cut(s)	1091
HphI	GGTGA	2 cut(s)	164, 827
Hpy166II	GTNNAC	5 cut(s)	155, 268, 586, 693, 863
Hpy188I	TCNGA	5 cut(s)	309, 349, 357, 637, 720
Hpy188III	TCNNGA	2 cut(s)	51, 368
Hpy8I	GTNNAC	5 cut(s)	155, 268, 586, 693, 863
Hpy99I	CGWCG	2 cut(s)	690, 933
HpyCH4III	ACNGT	6 cut(s)	90, 95, 283, 690, 766, 821
HpyCH4IV	ACGT	2 cut(s)	378, 698
HpyCH4V	TGCA	5 cut(s)	17, 76, 127, 456, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	378, 698
Hsp92II	CATG	5 cut(s)	206, 220, 415, 529, 776
KspAI	GTTAAC	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	352, 715, 1080
LguI	GCTCTTC	1 cut(s)	856
LmnI	GCTCC	3 cut(s)	9, 144, 769
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	378, 698
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	3 cut(s)	354, 717, 1082
MboI	GATC	3 cut(s)	352, 715, 1080
MboII	GAAGA	5 cut(s)	55, 120, 362, 441, 843
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	5 cut(s)	487, 549, 868, 873, 898
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	942
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	312, 315, 418, 476, 506, 772, 793, 961, 1006
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	3 cut(s)	692, 741, 914
MslI	CAYNNNNRTG	2 cut(s)	33, 230
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	956
MwoI	GCNNNNNNNGC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	352, 715, 1080
NlaIII	CATG	5 cut(s)	206, 220, 415, 529, 776
NmuCI	GTSAC	1 cut(s)	815
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	2 cut(s)	101, 362
OliI	CACNNNNGTG	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	856
PfeI	GAWTC	5 cut(s)	111, 364, 632, 656, 890
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	622
PleI	GAGTC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	941
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	170, 476
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	92, 984
RsaNI	GTAC	2 cut(s)	91, 983
RseI	CAYNNNNRTG	2 cut(s)	33, 230
SapI	GCTCTTC	1 cut(s)	856
SaqAI	TTAA	3 cut(s)	692, 741, 914
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	3 cut(s)	352, 715, 1080
SchI	GAGTC	1 cut(s)	942
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	2 cut(s)	101, 362
SmiI	ATTTAAAT	1 cut(s)	915
SmiMI	CAYNNNNRTG	2 cut(s)	33, 230
Sse9I	AATT	5 cut(s)	487, 549, 868, 873, 898
SsiI	CCGC	4 cut(s)	118, 554, 611, 1071
SspI	AATATT	2 cut(s)	288, 911
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	2 cut(s)	79, 411
SwaI	ATTTAAAT	1 cut(s)	915
TaaI	ACNGT	6 cut(s)	90, 95, 283, 690, 766, 821
TaiI	ACGT	2 cut(s)	381, 701
TaqI	TCGA	5 cut(s)	101, 362, 450, 685, 893
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	5 cut(s)	487, 549, 868, 873, 898
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	5 cut(s)	111, 364, 632, 656, 890
Tru1I	TTAA	3 cut(s)	692, 741, 914
Tru9I	TTAA	3 cut(s)	692, 741, 914
TscAI	CASTG	2 cut(s)	100, 769
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	5 cut(s)	56, 409, 645, 816, 995
TspGWI	ACGGA	2 cut(s)	242, 525
TspRI	CASTG	2 cut(s)	100, 769
Van91I	CCANNNNNTGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	868, 898
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	32, 1074
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.