Rh1BG377200

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013721
Physical Location & Seq
Forward (+)
50710891 .. 50711211
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG377200.1

Sequence Viewer

Length: 321 bp
ATGGATGAGTTTAGAAGGGAAGTGATTATAACTCTCGTCAACCCCTTCACAACAGCAATGTTGCAGCGTTTCCCTCCATTGGAAATCTATGGCTGGGGTATCCCAAAAGTTATCTGGTCCGAAGATCCGACTTTGAATCAAGACAATTATGTGGTTGTAGCTTTATCTGATCATGACTCCTTGGATTTCATCAAAGGAAGACAAGATTGGTATCATATCGAATGCAAACCGTACCTCGCAGAGTTTGATCATTGCAAATTTACTGATGCTATATTTTTTACAGGGGCCAAATCTATATGGCTGATAATTGTTTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

106

Amino Acids

12.48

Weight (kDa)

4.77

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 117, 285
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 110
BclI TGATCA 2 cut(s) 169, 247
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 117, 285
BmiI GGNNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 63, 250
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 63, 250
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 79
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 124, 169, 247
BspANI GGCC 1 cut(s) 287
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 63, 250
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 124, 169, 247
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 231
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 127, 172, 250
BstMBI GATC 3 cut(s) 124, 169, 247
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 117, 285
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 173
CviJI RGCY 4 cut(s) 93, 161, 287, 301
CviKI_1 RGCY 4 cut(s) 93, 161, 287, 301
CviQI GTAC 1 cut(s) 232
DpnI GATC 3 cut(s) 126, 171, 249
DpnII GATC 3 cut(s) 124, 169, 247
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 176
FaiI YATR 8 cut(s) 29, 90, 150, 174, 216, 272, 296, 298
FatI CATG 1 cut(s) 172
FbaI TGATCA 2 cut(s) 169, 247
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 1 cut(s) 176
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 2 cut(s) 136, 176
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 121, 129, 169
Hpy188III TCNNGA 2 cut(s) 140, 173
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 9, 55
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 64, 225, 255
Hsp92II CATG 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 169, 247
Kzo9I GATC 3 cut(s) 124, 169, 247
LpnPI CCDG 3 cut(s) 79, 100, 267
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 256
MalI GATC 3 cut(s) 126, 171, 249
MboI GATC 3 cut(s) 124, 169, 247
MboII GAAGA 2 cut(s) 134, 210
MflI RGATCY 1 cut(s) 124
MluCI AATT 3 cut(s) 145, 257, 306
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 2 cut(s) 84, 245
Mva1269I GAATGC 1 cut(s) 227
NdeII GATC 3 cut(s) 124, 169, 247
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 286
PagI TCATGA 1 cut(s) 172
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 117, 285
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 3 cut(s) 124, 169, 247
Sau96I GGNCC 2 cut(s) 117, 285
SchI GAGTC 1 cut(s) 170
SetI ASST 2 cut(s) 163, 237
SfaNI GCATC 1 cut(s) 256
SgeI CNNG 9 cut(s) 47, 106, 127, 152, 185, 193, 215, 248, 294
SinI GGWCC 1 cut(s) 117
Sse9I AATT 3 cut(s) 145, 257, 306
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 145, 257, 306
TfiI GAWTC 1 cut(s) 136
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.