Rmu_ssc0000155.1_g000027

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
Physical Location & Seq
Reverse (-)
105283 .. 106816
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000027.1.cds

Sequence Viewer

Length: 1359 bp
atggaaatatttggcgccaacaactcccgctcagaaaataatttgggctgggctcatgtctgccttgggcctcaatgctttcagcccactcacagattcaatacatcatcaatattgtgtcttgatctggacgtggcttgtttggttcttgataagttattggaatccatcgaccgggctagattcggtgtggtttgcaaagaatggggtcgtcttgcaagagcctataggcgattgtgtaagccaaaggtgcttcccatgctcctaatccctgcagacaaccatcactactatggaatgaagaactcacgactatcactagggactattatgcaccaaggattactgtacagtgtttcgaaacgaagaatctaccgccgtgtgcagagtattatgctcccatcagtaggtgaaccagaaccagaaactggatatagcagatactatcgtggatgtgggcatggttgggtggccatgatagccacggatgtgatatttggaagtgaaacgactataactctcgtcaaccctttcacaacagtaatattgccgtctttacctcctctgaaactctataactcgggtatcccaaaagttatcttgtccgaagatccgacttcgaatccagaccattacgttgttgtagctttcgctgatgattgtgcctccatggatttcatcaaaggaagacaaggttggtatcatatcgattgcagaccatacctcgcagagcctgatgattacaattttactgatgctatattttacggaggccaaatctacatggctgatagttattacgggataattgcggtgtttgattataaaagcaaacaacaagtatacttggaaaagatatacacaccaccgccacctgctgcacgagatgaatccgaacgggcatatcttgtggaatcaatcaatggagacatattctatattcgacggttaacaacgtcagggtattatagtgatctgaccgagagttttagggtttttaaggtggtgctcaatggaagcactgtggagcatgttgaggtaaagagcattggagatgaggctctgtttgttggtgacagtcattcattatcttttttggcttcaagctcttcagggtgtcaaccaaattcaattcacttcacagatgattcgataaatttttccaaatatttaaatagctatatacgacgagtcatcacaataaaatgctaccaggacgatgacgaggacgaatatcaggtacgagctgatatgggtatctttcatttagaggatggaactattagccgatattacctaaaatgttttgacgatgacctgctaccacccgctttttggatcataccaccggccgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

51.35

Weight (kDa)

5.57

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AarI CACCTGC 1 cut(s) 883
Acc36I ACCTGC 2 cut(s) 883, 1326
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 843
AciI CCGC 5 cut(s) 28, 376, 812, 869, 1329
AclWI GGATC 2 cut(s) 605, 1346
AcoI YGGCCR 2 cut(s) 471, 1350
AcsI RAATTY 2 cut(s) 1126, 1156
AcuI CTGAAG 1 cut(s) 1095
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 350, 1242
AfiI CCNNNNNNNGG 4 cut(s) 174, 407, 428, 1335
AgsI TTSAA 3 cut(s) 100, 1104, 1131
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 4 cut(s) 647, 1107, 1179, 1247
AluI AGCT 4 cut(s) 647, 1107, 1179, 1247
Alw21I GWGCWC 1 cut(s) 1011
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 2 cut(s) 605, 1346
AlwNI CAGNNNCTG 2 cut(s) 428, 734
Ama87I CYCGRG 1 cut(s) 580
AoxI GGCC 4 cut(s) 68, 471, 772, 1350
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 2 cut(s) 1126, 1156
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 422, 1085
AsuII TTCGAA 2 cut(s) 359, 620
AvaI CYCGRG 1 cut(s) 580
BaeI ACNNNNGTAYC 4 cut(s) 433, 466, 568, 601
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 55
BauI CACGAG 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 1011
BbvI GCAGC 1 cut(s) 865
BccI CCATC 4 cut(s) 176, 291, 409, 1268
BceAI ACGGC 3 cut(s) 363, 535, 1337
BciT130I CCWGG 1 cut(s) 1214
BciVI GTATCC 1 cut(s) 596
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 180, 320
BfmI CTRYAG 2 cut(s) 226, 273
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 883, 1326
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 880
Bme1390I CCNGG 2 cut(s) 176, 1214
BmeT110I CYCGRG 1 cut(s) 580
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 176, 1214
BmsI GCATC 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 694
Bpu14I TTCGAA 2 cut(s) 359, 620
BpuMI CCSGG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 64, 337, 483, 669
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 407, 428, 1335
Bse118I RCCGGY 1 cut(s) 1348
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 1214
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 4 cut(s) 64, 337, 483, 669
BseGI GGATG 3 cut(s) 458, 493, 1279
BseLI CCNNNNNNNGG 4 cut(s) 174, 407, 428, 1335
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 552
BseX3I CGGCCG 1 cut(s) 1350
BseXI GCAGC 1 cut(s) 865
BseYI CCCAGC 1 cut(s) 48
BsgI GTGCAG 2 cut(s) 404, 864
Bsh1285I CGRYCG 2 cut(s) 175, 1353
BshFI GGCC 4 cut(s) 70, 473, 774, 1352
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 708
BsiEI CGRYCG 2 cut(s) 175, 1353
BsiHKAI GWGCWC 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 2 cut(s) 175, 1349
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 4 cut(s) 174, 407, 428, 1335
BsmAI GTCTC 1 cut(s) 921
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 4 cut(s) 70, 473, 774, 1352
BsoBI CYCGRG 1 cut(s) 580
Bsp119I TTCGAA 2 cut(s) 359, 620
Bsp1286I GDGCHC 2 cut(s) 55, 1011
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 4 cut(s) 124, 610, 973, 1338
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 5 cut(s) 28, 376, 812, 869, 1329
BspANI GGCC 4 cut(s) 70, 473, 774, 1352
BspCNI CTCAG 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 2 cut(s) 883, 1326
BspPI GGATC 2 cut(s) 605, 1346
BspQI GCTCTTC 1 cut(s) 1114
BspT104I TTCGAA 2 cut(s) 359, 620
BspT107I GGYRCC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 1348
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 1348
BssECI CCNNGG 4 cut(s) 64, 337, 483, 669
BssMI GATC 4 cut(s) 124, 610, 973, 1338
BssNAI GTATAC 1 cut(s) 844
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 3 cut(s) 64, 337, 669
Bst1107I GTATAC 1 cut(s) 844
Bst2BI CACGAG 1 cut(s) 882
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 6 cut(s) 348, 353, 541, 948, 1024, 1079
Bst6I CTCTTC 1 cut(s) 1114
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 2 cut(s) 359, 620
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 2 cut(s) 483, 669
BstF5I GGATG 3 cut(s) 458, 493, 1279
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 127, 613, 976, 1341
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 4 cut(s) 124, 610, 973, 1338
BstMCI CGRYCG 2 cut(s) 175, 1353
BstMWI GCNNNNNNNGC 3 cut(s) 250, 259, 479
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 1 cut(s) 1034
BstSCI CCNGG 2 cut(s) 174, 1212
BstSFI CTRYAG 2 cut(s) 226, 273
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BstZ17I GTATAC 1 cut(s) 844
BstZI CGGCCG 1 cut(s) 1350
Bsu15I ATCGAT 1 cut(s) 708
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 4 cut(s) 70, 473, 774, 1352
BsuTUI ATCGAT 1 cut(s) 708
BtgI CCRYGG 2 cut(s) 483, 669
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 458, 493, 1279
BtsIMutI CAGTG 2 cut(s) 358, 1020
BveI ACCTGC 2 cut(s) 883, 1326
CaiI CAGNNNCTG 2 cut(s) 428, 734
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 1348
Cfr13I GGNCC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 708
Csp6I GTAC 2 cut(s) 349, 1241
CviAII CATG 7 cut(s) 56, 259, 461, 475, 670, 784, 1031
CviQI GTAC 2 cut(s) 349, 1241
DdeI CTNAG 1 cut(s) 31
DinI GGCGCC 1 cut(s) 16
DpnI GATC 4 cut(s) 126, 612, 975, 1340
DpnII GATC 4 cut(s) 124, 610, 973, 1338
DraI TTTAAA 1 cut(s) 1173
EaeI YGGCCR 2 cut(s) 471, 1350
EagI CGGCCG 1 cut(s) 1350
Eam1104I CTCTTC 1 cut(s) 1114
EarI CTCTTC 1 cut(s) 1114
EclXI CGGCCG 1 cut(s) 1350
Eco130I CCWWGG 3 cut(s) 64, 337, 669
Eco24I GRGCYC 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 1350
Eco57I CTGAAG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 3 cut(s) 64, 337, 669
EcoT38I GRGCYC 1 cut(s) 55
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 64, 337, 669
FaeI CATG 7 cut(s) 59, 262, 464, 478, 673, 787, 1034
FaqI GGGAC 1 cut(s) 337
FatI CATG 7 cut(s) 55, 258, 460, 474, 669, 783, 1030
FauI CCCGC 2 cut(s) 35, 1336
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 1 cut(s) 879
FokI GGATG 3 cut(s) 465, 500, 1286
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 879
FspBI CTAG 2 cut(s) 180, 320
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 879
GsaI CCCAGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 4 cut(s) 70, 473, 774, 1352
HapII CCGG 2 cut(s) 175, 1349
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 59, 262, 464, 478, 673, 787, 1034
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 3 cut(s) 526, 951, 1121
HindII GTYRAC 3 cut(s) 526, 951, 1121
HinfI GANTC 9 cut(s) 96, 164, 183, 369, 622, 890, 914, 1148, 1191
HpaI GTTAAC 1 cut(s) 951
HpaII CCGG 2 cut(s) 175, 1349
HphI GGTGA 2 cut(s) 422, 1085
Hpy166II GTNNAC 5 cut(s) 413, 526, 844, 951, 1121
Hpy188I TCNGA 6 cut(s) 34, 567, 607, 615, 895, 978
Hpy188III TCNNGA 5 cut(s) 122, 128, 149, 309, 626
Hpy8I GTNNAC 5 cut(s) 413, 526, 844, 951, 1121
Hpy99I CGWCG 2 cut(s) 948, 1191
HpyCH4III ACNGT 6 cut(s) 348, 353, 541, 948, 1024, 1079
HpyCH4IV ACGT 3 cut(s) 132, 636, 956
HpyCH4V TGCA 7 cut(s) 198, 218, 275, 334, 385, 714, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 259, 479
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 3 cut(s) 132, 636, 956
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 59, 262, 464, 478, 673, 787, 1034
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 4 cut(s) 124, 610, 973, 1338
LguI GCTCTTC 1 cut(s) 1114
LmnI GCTCC 3 cut(s) 267, 402, 1027
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 1 cut(s) 745
MaeI CTAG 2 cut(s) 180, 320
MaeII ACGT 3 cut(s) 132, 636, 956
MaeIII GTNAC 1 cut(s) 1073
MalI GATC 4 cut(s) 126, 612, 975, 1340
MbiI CCGCTC 1 cut(s) 30
MboI GATC 4 cut(s) 124, 610, 973, 1338
MboII GAAGA 5 cut(s) 313, 378, 620, 699, 1101
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 2 cut(s) 55, 1011
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 6 cut(s) 40, 745, 807, 1126, 1131, 1156
MluNI TGGCCA 1 cut(s) 473
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 1200
MmeI TCCRAC 1 cut(s) 638
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 3 cut(s) 950, 999, 1172
MslI CAYNNNNRTG 2 cut(s) 291, 488
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 2 cut(s) 175, 1349
MspR9I CCNGG 2 cut(s) 176, 1214
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 3 cut(s) 250, 259, 479
NarI GGCGCC 1 cut(s) 15
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 669
NdeII GATC 4 cut(s) 124, 610, 973, 1338
NlaIII CATG 7 cut(s) 59, 262, 464, 478, 673, 787, 1034
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 1073
NspI RCATGY 1 cut(s) 1034
NspV TTCGAA 2 cut(s) 359, 620
OliI CACNNNNGTG 1 cut(s) 488
PaqCI CACCTGC 1 cut(s) 883
PciSI GCTCTTC 1 cut(s) 1114
PfeI GAWTC 8 cut(s) 96, 164, 183, 369, 622, 890, 914, 1148
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 1 cut(s) 880
PleI GAGTC 1 cut(s) 1199
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 1199
PsiI TTATAA 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 1212
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 428, 734
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 2 cut(s) 350, 1242
RsaNI GTAC 2 cut(s) 349, 1241
RseI CAYNNNNRTG 2 cut(s) 291, 488
SapI GCTCTTC 1 cut(s) 1114
SaqAI TTAA 3 cut(s) 950, 999, 1172
SatI GCNGC 1 cut(s) 879
Sau3AI GATC 4 cut(s) 124, 610, 973, 1338
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 1200
ScrFI CCNGG 2 cut(s) 176, 1214
SduI GDGCHC 2 cut(s) 55, 1011
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 2 cut(s) 226, 273
SfoI GGCGCC 1 cut(s) 16
SfuI TTCGAA 2 cut(s) 359, 620
SmiI ATTTAAAT 1 cut(s) 1173
SmiMI CAYNNNNRTG 2 cut(s) 291, 488
Sse9I AATT 6 cut(s) 40, 745, 807, 1126, 1131, 1156
SsiI CCGC 5 cut(s) 28, 376, 812, 869, 1329
SspDI GGCGCC 1 cut(s) 14
SspI AATATT 4 cut(s) 9, 114, 546, 1169
SspMI CTAG 2 cut(s) 180, 320
StyD4I CCNGG 2 cut(s) 174, 1212
StyI CCWWGG 3 cut(s) 64, 337, 669
SwaI ATTTAAAT 1 cut(s) 1173
TaaI ACNGT 6 cut(s) 348, 353, 541, 948, 1024, 1079
TaiI ACGT 3 cut(s) 135, 639, 959
TaqI TCGA 6 cut(s) 171, 359, 620, 708, 943, 1151
TaqII GACCGA 1 cut(s) 995
TasI AATT 6 cut(s) 40, 745, 807, 1126, 1131, 1156
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 8 cut(s) 96, 164, 183, 369, 622, 890, 914, 1148
Tru1I TTAA 3 cut(s) 950, 999, 1172
Tru9I TTAA 3 cut(s) 950, 999, 1172
TscAI CASTG 2 cut(s) 358, 1027
TseFI GTSAC 1 cut(s) 1073
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 1 cut(s) 1073
TspDTI ATGAA 5 cut(s) 314, 667, 903, 1074, 1253
TspGWI ACGGA 2 cut(s) 500, 783
TspRI CASTG 2 cut(s) 358, 1027
Van91I CCANNNNNTGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 1126, 1156
XceI RCATGY 1 cut(s) 1034
XcmI CCANNNNNNNNNTGG 2 cut(s) 290, 1332
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 2 cut(s) 180, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.