Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

204278 .. 206082

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggcgccggaatccaacttttccgacggaattgaatccggcaactctctccaggctatctgctacaagcgtggctcgcttcaattactcgatcagctccctctgcaaagtacatacttgaatatccgggactccacagatggatggcatgcaatcaaagacatggtggtgaggggagcaccggccattgctatagccgcggcgctgtctttggctgtggaagtgtttaatttggaggattttaatggaactccggacgaagcttgttctttccttataatgaaacttgagtatttagtatccagccttgcaactgctggttatggtactgctcttggtgtaatacgttcacttcatacggaaggagttttagaaagggcctattgcacagagacacgcccattcaaccaaggatcaagactcacagcatttgagttagtgcatgataacatacctgccactcttatagcagattcggctgcagcagcattaatgaaggatggaaaggtgaatgccgttgttgttggagcagaccgtgtggctgcgaatggtgacaccgctaacaagataggtacctacagtcttgccgtcagtgcaaagtaccacaacataccattctttgtggcagcaccgctgacttccgttgacttatctcttgcttctggagaagcgatagtaatagaggaaagatccccaaaggaattgttgaacacacatggaggactcggggaacaagttgctgcatctggaatctctgtctggaacccagcctttgatgtcactcctgctagcttaatatctggcatcataacagaaaagggtgtcatcacgaaaaagggtacagatgcttttgacataaaggattttgttcaaaaggcccgatcggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

296

Amino Acids

31.29

Weight (kDa)

4.93

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	109 - 277	2.9e-59	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	463
Acc65I	GGTACC	1 cut(s)	572
AccB1I	GGYRCC	2 cut(s)	4, 572
AccII	CGCG	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	4 cut(s)	198, 200, 558, 632
AclWI	GGATC	2 cut(s)	421, 684
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	112, 328, 574, 602, 841
AgsI	TTSAA	6 cut(s)	35, 83, 121, 406, 709, 872
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	3 cut(s)	97, 263, 792
AluI	AGCT	3 cut(s)	97, 263, 792
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	421, 684
Ama87I	CYCGRG	1 cut(s)	725
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	3 cut(s)	183, 378, 876
ApeKI	GCWGC	6 cut(s)	479, 482, 485, 542, 626, 740
AseI	ATTAAT	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	572
AspLEI	GCGC	2 cut(s)	7, 205
AspS9I	GGNCC	2 cut(s)	378, 877
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	181, 520, 563
AsuNHI	GCTAGC	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	725
BanI	GGYRCC	2 cut(s)	4, 572
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	6 cut(s)	466, 494, 497, 529, 638, 727
BccI	CCATC	3 cut(s)	134, 138, 494
BceAI	ACGGC	2 cut(s)	500, 572
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	3 cut(s)	192, 480, 577
BfoI	RGCGCY	2 cut(s)	8, 206
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	8 cut(s)	198, 201, 480, 483, 486, 543, 627, 741
BlsI	GCNGC	8 cut(s)	199, 202, 481, 484, 487, 544, 628, 742
Bme1390I	CCNGG	2 cut(s)	53, 128
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	2 cut(s)	378, 877
BmiI	GGNNCC	3 cut(s)	6, 574, 764
BmrFI	CCNGG	2 cut(s)	53, 128
BmsI	GCATC	3 cut(s)	752, 813, 835
BmtI	GCTAGC	1 cut(s)	792
BpmI	CTGGAG	2 cut(s)	35, 684
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	198, 409
BsaWI	WCCGGW	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	198, 409
BseGI	GGATG	2 cut(s)	149, 505
BseMI	GCAATG	1 cut(s)	186
BseXI	GCAGC	6 cut(s)	466, 494, 497, 529, 638, 727
BseYI	CCCAGC	1 cut(s)	766
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	884
BshFI	GGCC	3 cut(s)	185, 380, 878
BshNI	GGYRCC	2 cut(s)	4, 572
BsiEI	CGRYCG	1 cut(s)	884
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	5 cut(s)	8, 39, 127, 182, 254
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	185, 380, 878
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	91, 413, 689, 881
BspACI	CCGC	4 cut(s)	198, 200, 558, 632
BspANI	GGCC	3 cut(s)	185, 380, 878
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	3 cut(s)	6, 574, 764
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	421, 684
BspT107I	GGYRCC	2 cut(s)	4, 572
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	198, 409
BssMI	GATC	4 cut(s)	91, 413, 689, 881
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	536, 581
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	77, 150, 790
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	149, 505
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	2 cut(s)	8, 206
BstHHI	GCGC	2 cut(s)	7, 205
BstKTI	GATC	4 cut(s)	94, 416, 692, 884
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	4 cut(s)	91, 413, 689, 881
BstMCI	CGRYCG	1 cut(s)	884
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 103, 197, 476, 485, 593
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	51, 126
BstSFI	CTRYAG	3 cut(s)	192, 480, 577
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	6 cut(s)	466, 494, 497, 529, 638, 727
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	185, 380, 878
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	149, 505
BtsIMutI	CAGTG	1 cut(s)	598
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	77, 150, 790
CfoI	GCGC	2 cut(s)	7, 205
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	378, 877
Cfr42I	CCGCGG	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	111, 327, 573, 601, 840
CviAII	CATG	4 cut(s)	149, 163, 443, 716
CviQI	GTAC	5 cut(s)	111, 327, 573, 601, 840
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	93, 415, 691, 883
DpnII	GATC	4 cut(s)	91, 413, 689, 881
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	152, 166, 446, 719
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	148, 162, 442, 715
Fnu4HI	GCNGC	8 cut(s)	198, 201, 480, 483, 486, 543, 627, 741
FokI	GGATG	2 cut(s)	156, 512
Fsp4HI	GCNGC	8 cut(s)	198, 201, 480, 483, 486, 543, 627, 741
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	2 cut(s)	6, 204
GluI	GCNGC	8 cut(s)	198, 201, 480, 483, 486, 543, 627, 741
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	2 cut(s)	35, 684
HaeII	RGCGCY	2 cut(s)	8, 206
HaeIII	GGCC	3 cut(s)	185, 380, 878
HapII	CCGG	5 cut(s)	8, 39, 127, 182, 254
HhaI	GCGC	2 cut(s)	7, 205
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	152, 166, 446, 719
Hin6I	GCGC	2 cut(s)	5, 203
HinP1I	GCGC	2 cut(s)	5, 203
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	7 cut(s)	11, 35, 131, 420, 473, 723, 750
HpaII	CCGG	5 cut(s)	8, 39, 127, 182, 254
HphI	GGTGA	3 cut(s)	181, 520, 563
Hpy166II	GTNNAC	2 cut(s)	350, 646
Hpy188I	TCNGA	2 cut(s)	25, 886
Hpy188III	TCNNGA	6 cut(s)	254, 417, 663, 747, 760, 829
Hpy8I	GTNNAC	2 cut(s)	350, 646
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	356, 490
HpyCH4III	ACNGT	2 cut(s)	536, 581
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	8 cut(s)	106, 152, 311, 387, 442, 482, 596, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 103, 197, 476, 485, 593
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	152, 166, 446, 719
HspAI	GCGC	2 cut(s)	5, 203
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	253
KpnI	GGTACC	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	91, 413, 689, 881
LmnI	GCTCC	3 cut(s)	102, 176, 527
Lsp1109I	GCAGC	6 cut(s)	466, 494, 497, 529, 638, 727
LweI	GCATC	3 cut(s)	752, 813, 835
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	551, 778
MalI	GATC	4 cut(s)	93, 415, 691, 883
MboI	GATC	4 cut(s)	91, 413, 689, 881
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	30, 83, 229, 701
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	125, 414, 717
MmeI	TCCRAC	3 cut(s)	39, 48, 505
MnlI	CCTC	5 cut(s)	111, 165, 229, 676, 713
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	4 cut(s)	228, 243, 491, 794
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	200, 634
MspI	CCGG	5 cut(s)	8, 39, 127, 182, 254
MspR9I	CCNGG	2 cut(s)	53, 128
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	6 cut(s)	76, 103, 197, 476, 485, 593
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	91, 413, 689, 881
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	4 cut(s)	152, 166, 446, 719
NlaIV	GGNNCC	3 cut(s)	6, 574, 764
NmuCI	GTSAC	2 cut(s)	551, 778
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	11, 35, 473, 750
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	8 cut(s)	199, 202, 481, 484, 487, 544, 628, 742
Ple19I	CGATCG	1 cut(s)	884
PleI	GAGTC	3 cut(s)	125, 414, 717
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	125, 414, 717
PshBI	ATTAAT	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	6, 574, 764
PspPI	GGNCC	2 cut(s)	378, 877
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	689
PvuI	CGATCG	1 cut(s)	884
RsaI	GTAC	5 cut(s)	112, 328, 574, 602, 841
RsaNI	GTAC	5 cut(s)	111, 327, 573, 601, 840
RseI	CAYNNNNRTG	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	201
SaqAI	TTAA	4 cut(s)	228, 243, 491, 794
SatI	GCNGC	8 cut(s)	198, 201, 480, 483, 486, 543, 627, 741
Sau3AI	GATC	4 cut(s)	91, 413, 689, 881
Sau96I	GGNCC	2 cut(s)	378, 877
SchI	GAGTC	3 cut(s)	125, 414, 717
ScrFI	CCNGG	2 cut(s)	53, 128
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	99, 265, 349, 457, 510, 574, 578, 794
SfaNI	GCATC	3 cut(s)	752, 813, 835
SfcI	CTRYAG	3 cut(s)	192, 480, 577
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	4 cut(s)	30, 83, 229, 701
SsiI	CCGC	4 cut(s)	198, 200, 558, 632
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	51, 126
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	536, 581
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	30, 83, 229, 701
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	2 cut(s)	200, 203
TfiI	GAWTC	4 cut(s)	11, 35, 473, 750
Tru1I	TTAA	4 cut(s)	228, 243, 491, 794
Tru9I	TTAA	4 cut(s)	228, 243, 491, 794
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	551, 778
TseI	GCWGC	6 cut(s)	479, 482, 485, 542, 626, 740
Tsp45I	GTSAC	2 cut(s)	551, 778
TspDTI	ATGAA	3 cut(s)	296, 344, 509
TspGWI	ACGGA	3 cut(s)	42, 374, 631
TspRI	CASTG	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	491
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.