Rmu_ssc0000186.1_g000028

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000186.1
OG0004298
Physical Location & Seq
Reverse (-)
149352 .. 152383
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
atgacttatgagatctctgacgacctctttgggggacctccaatgaggttttcagagaagttctgtgggcagcggctgttggcttcccgagaacaaacatcgcctttggctctgctccaatcaatggattcaggaacacaggaagtggttgcatatgaaggagaggccattttagaaccatacgagggtatggaatttgaatctgaagatgctgcaaagatattttatgatgactatgccagacgccttggatttgtcatgcgtgtcatgtcatgtcgtcgatccgaaagagatggtaggattctcgctcgtcgacttggctgtaataaggaaggtcactgtgttagtattcgaggtaaatttggtcccgtcagaaaaccgcgagccagtacaagggagggttgtaaggcaatgattcatgtcaagtatgataaatctggtaaatgggtgattacaaaatttgttaaggaacataaccattcacttgtggtgtctccacgtgaagcacgtcaaacaatggatgagaaggataagaaaattcaagaattatctgcagagcttcggaataagaaacgcttgtgtacaacatatcaagaacagctaacagcatttatgaaaattgttgaagagtataatgaccagctatccttgaaagtgaaaaacgtagttaacaatcttaaagaattcgaatccatagatgtggagcttacgcagcgaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

240

Amino Acids

27.68

Weight (kDa)

8.65

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 75 - 163 3.3e-28 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AccI GTMKAC 1 cut(s) 313
AccII CGCG 1 cut(s) 382
AciI CCGC 2 cut(s) 73, 380
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 5 cut(s) 194, 359, 458, 537, 683
AcuI CTGAAG 1 cut(s) 225
AcvI CACGTG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 2 cut(s) 391, 583
AfiI CCNNNNNNNGG 4 cut(s) 31, 124, 185, 393
AgsI TTSAA 4 cut(s) 200, 542, 626, 652
AjiI CACGTC 1 cut(s) 509
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 4 cut(s) 559, 601, 643, 706
AluI AGCT 4 cut(s) 559, 601, 643, 706
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 70, 212, 712
ApoI RAATTY 5 cut(s) 194, 359, 458, 537, 683
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspS9I GGNCC 2 cut(s) 35, 365
AsuHPI GGTGA 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 687
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 2 cut(s) 35, 365
BbrPI CACGTG 1 cut(s) 500
BbvI GCAGC 2 cut(s) 82, 199
BccI CCATC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 552
BglII AGATCT 1 cut(s) 12
BisI GCNGC 4 cut(s) 71, 74, 213, 713
BlsI GCNGC 4 cut(s) 72, 75, 214, 714
Bme18I GGWCC 2 cut(s) 35, 365
BmeT110I CYCGRG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 509
BmgT120I GGNCC 2 cut(s) 35, 365
BmiI GGNNCC 2 cut(s) 36, 367
BmsI GCATC 1 cut(s) 199
Bpu14I TTCGAA 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 124, 185, 393
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 4 cut(s) 31, 124, 185, 393
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 82, 199
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 48, 351
BslI CCNNNNNNNGG 4 cut(s) 31, 124, 185, 393
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 2 cut(s) 48, 351
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 687
Bsp1407I TGTACA 1 cut(s) 581
Bsp143I GATC 2 cut(s) 12, 281
BspACI CCGC 2 cut(s) 73, 380
BspANI GGCC 1 cut(s) 167
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 36, 367
BspMAI CTGCAG 1 cut(s) 556
BspPI GGATC 1 cut(s) 276
BspT104I TTCGAA 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 417
BsrGI TGTACA 1 cut(s) 581
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 12, 281
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 384
BstF5I GGATG 1 cut(s) 526
BstFNI CGCG 1 cut(s) 382
BstKTI GATC 2 cut(s) 15, 284
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 2 cut(s) 12, 281
BstMWI GCNNNNNNNGC 1 cut(s) 712
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 82, 199
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 509
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 35, 365
CseI GACGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 390, 582
CviAII CATG 4 cut(s) 259, 268, 273, 419
CviQI GTAC 2 cut(s) 390, 582
DpnI GATC 2 cut(s) 14, 283
DpnII GATC 2 cut(s) 12, 281
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 35, 365
Eco57I CTGAAG 1 cut(s) 225
Eco72I CACGTG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 683
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 4 cut(s) 262, 271, 276, 422
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 48, 351
FatI CATG 4 cut(s) 258, 267, 272, 418
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 71, 74, 213, 713
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 4 cut(s) 71, 74, 213, 713
GluI GCNGC 4 cut(s) 71, 74, 213, 713
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 4 cut(s) 262, 271, 276, 422
HincII GTYRAC 2 cut(s) 314, 670
HindII GTYRAC 2 cut(s) 314, 670
HinfI GANTC 5 cut(s) 128, 200, 301, 415, 689
HpaI GTTAAC 1 cut(s) 670
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 3 cut(s) 314, 582, 670
Hpy188I TCNGA 6 cut(s) 19, 55, 205, 286, 374, 564
Hpy188III TCNNGA 4 cut(s) 87, 132, 542, 593
Hpy8I GTNNAC 3 cut(s) 314, 582, 670
Hpy99I CGWCG 2 cut(s) 282, 315
HpyAV CCTTC 3 cut(s) 152, 326, 520
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 3 cut(s) 499, 508, 663
HpyCH4V TGCA 3 cut(s) 152, 215, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 712
HpySE526I ACGT 3 cut(s) 499, 508, 663
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 4 cut(s) 262, 271, 276, 422
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 2 cut(s) 12, 281
LmnI GCTCC 2 cut(s) 120, 703
LpnPI CCDG 6 cut(s) 117, 125, 253, 400, 423, 653
Lsp1109I GCAGC 2 cut(s) 82, 199
LweI GCATC 1 cut(s) 199
MaeII ACGT 3 cut(s) 499, 508, 663
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 14, 283
MboI GATC 2 cut(s) 12, 281
MboII GAAGA 2 cut(s) 218, 638
MflI RGATCY 1 cut(s) 12
MluCI AATT 7 cut(s) 194, 359, 458, 537, 545, 618, 683
MnlI CCTC 8 cut(s) 35, 39, 48, 157, 178, 347, 391, 710
MseI TTAA 3 cut(s) 465, 669, 678
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 73
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 712
NdeI CATATG 1 cut(s) 154
NdeII GATC 2 cut(s) 12, 281
NlaIII CATG 4 cut(s) 262, 271, 276, 422
NlaIV GGNNCC 2 cut(s) 36, 367
NmuCI GTSAC 1 cut(s) 335
NspV TTCGAA 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PfeI GAWTC 5 cut(s) 128, 200, 301, 415, 689
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 4 cut(s) 72, 75, 214, 714
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
Ppu21I YACGTR 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspCI CACGTG 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 36, 367
PspPI GGNCC 2 cut(s) 35, 365
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 2 cut(s) 391, 583
RsaNI GTAC 2 cut(s) 390, 582
RseI CAYNNNNRTG 1 cut(s) 698
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 465, 669, 678
SatI GCNGC 4 cut(s) 71, 74, 213, 713
Sau3AI GATC 2 cut(s) 12, 281
Sau96I GGNCC 2 cut(s) 35, 365
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 2 cut(s) 35, 365
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 7 cut(s) 194, 359, 458, 537, 545, 618, 683
SsiI CCGC 2 cut(s) 73, 380
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 3 cut(s) 502, 511, 666
TaqI TCGA 4 cut(s) 280, 313, 352, 687
TasI AATT 7 cut(s) 194, 359, 458, 537, 545, 618, 683
TatI WGTACW 2 cut(s) 389, 581
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 5 cut(s) 128, 200, 301, 415, 689
Tru1I TTAA 3 cut(s) 465, 669, 678
Tru9I TTAA 3 cut(s) 465, 669, 678
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 3 cut(s) 70, 212, 712
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 3 cut(s) 171, 407, 629
TspRI CASTG 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 35, 365
XapI RAATTY 5 cut(s) 194, 359, 458, 537, 683
XmiI GTMKAC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.