Rmu_ssc0000204.1_g000001

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
OG0003156
Physical Location & Seq
Reverse (-)
1 .. 4368
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
atgtgtcgcccgtcaggcaacatccccacgacgtcaggggagacgccggagagccaccggacgagggatagagatgccttcgccgccgcaactccgcaagctttaaggcttaaagcatacagccgtcttagctcagctggactgcggggaggtgtgctcagatcggtggttttcatggaggaagtttccggcgacggagccgcgtcgtctccgatgatggagttcagcggcggcaatggactgccgccggggtacaatccgacgcctccgccgctcacggtgtcgggatcgttcaaggaggggaggagctcgtcgcggaggagagcaatcaggaggccaagcatggacggcgacgagttcattaacctcctgcacggctcggatccggtcaaggtggagctcaatcgcctcgagaatgaagtcagagataaggaccgagagttgggagaggcccaggctcagatcaaggctctcaagctctctgagagagccagggaaaaggctgttgaagagctcactgatgaactgacgaaggtggacgagaagctcaagttaacagaatctcttctagaaaacaaaaatcttgaaataaagaagatcaatgatgagaagaaagcttctatggcagctcaatttgcagctgaagctactctacgtagggttcatgctgctcaaaaagatgatgatatgcctccaatcgaagccattcttgcacctttggaggctgagctcaagcttgctcggcaagagattgcaaagcttcaagatgataacaaagctttggatcggcttaccaaatcaaaagaagcagctttacttgaggctgagaggactgtggaggttgccttggttaaggcctccatggtggatgaccttcaaaataaaaaccaagagctgatgaaacagatcgaaatttgtcaggaagaaaacaaaattttagatagaatgcatagacaaaaggttgccgaggttgaaaagcttacgcagactgtgcgggagttggaagaggcagttcttgctggtggtgctgcagccaatgctgtcagggattaccagcggaagttccaggagatgaat

Protein Analysis

359

Amino Acids

39.85

Weight (kDa)

5.73

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP70 PF07058 118 - 359 9.4e-143 Microtubule-associated protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 2 cut(s) 203, 316
AclWI GGATC 4 cut(s) 295, 377, 390, 792
AcsI RAATTY 2 cut(s) 912, 933
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 3 cut(s) 32, 44, 263
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 64, 442
AgsI TTSAA 6 cut(s) 295, 509, 587, 764, 878, 974
AjnI CCWGG 3 cut(s) 453, 491, 1065
Alw21I GWGCWC 5 cut(s) 159, 311, 402, 516, 732
Alw26I GTCTC 2 cut(s) 35, 213
AlwI GGATC 4 cut(s) 295, 377, 390, 792
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 3 cut(s) 335, 450, 855
ApeKI GCWGC 6 cut(s) 626, 638, 668, 809, 1028, 1031
ApoI RAATTY 2 cut(s) 912, 933
Asp700I GAANNNNTTC 2 cut(s) 564, 705
AspS9I GGNCC 2 cut(s) 433, 451
AsuC2I CCSGG 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 1 cut(s) 433
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 4 cut(s) 311, 402, 516, 732
BarI GAAGNNNNNNTAC 4 cut(s) 636, 668, 798, 830
Bbv12I GWGCWC 5 cut(s) 159, 311, 402, 516, 732
BbvI GCAGC 6 cut(s) 638, 650, 655, 821, 1015, 1043
BccI CCATC 1 cut(s) 211
BceAI ACGGC 3 cut(s) 108, 364, 391
BciT130I CCWGG 3 cut(s) 455, 493, 1067
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 35, 213
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 1029
BglI GCCNNNNNGGC 1 cut(s) 15
BlpI GCTNAGC 2 cut(s) 133, 726
Bme1390I CCNGG 4 cut(s) 249, 455, 493, 1067
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 433, 451
BmiI GGNNCC 2 cut(s) 199, 384
BmrFI CCNGG 4 cut(s) 249, 455, 493, 1067
BmsI GCATC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu1102I GCTNAGC 2 cut(s) 133, 726
BpuEI CTTGAG 4 cut(s) 458, 533, 716, 839
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 656
BsaHI GRCGYC 3 cut(s) 32, 44, 263
BsaJI CCNNGG 6 cut(s) 248, 453, 492, 846, 861, 966
BsaWI WCCGGW 2 cut(s) 57, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 442
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 3 cut(s) 455, 493, 1067
BseDI CCNNGG 6 cut(s) 248, 453, 492, 846, 861, 966
BseGI GGATG 2 cut(s) 21, 874
BseLI CCNNNNNNNGG 2 cut(s) 64, 442
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 6 cut(s) 147, 172, 473, 474, 717, 816
BseRI GAGGAG 2 cut(s) 319, 334
BseXI GCAGC 6 cut(s) 638, 650, 655, 821, 1015, 1043
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 2 cut(s) 203, 316
BshFI GGCC 3 cut(s) 337, 452, 857
BsiHKAI GWGCWC 5 cut(s) 159, 311, 402, 516, 732
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 5 cut(s) 47, 58, 189, 248, 386
BslI CCNNNNNNNGG 2 cut(s) 64, 442
BsmAI GTCTC 2 cut(s) 35, 213
BsmBI CGTCTC 2 cut(s) 35, 213
BsmI GAATGC 1 cut(s) 951
BsnI GGCC 3 cut(s) 337, 452, 857
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 5 cut(s) 159, 311, 402, 516, 732
Bsp143I GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
Bsp1720I GCTNAGC 2 cut(s) 133, 726
Bsp19I CCATGG 1 cut(s) 861
BspANI GGCC 3 cut(s) 337, 452, 857
BspCNI CTCAG 6 cut(s) 146, 171, 472, 475, 718, 817
BspFNI CGCG 2 cut(s) 203, 316
BspLI GGNNCC 2 cut(s) 199, 384
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 4 cut(s) 295, 377, 390, 792
BspQI GCTCTTC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 241
BssECI CCNNGG 6 cut(s) 248, 453, 492, 846, 861, 966
BssMI GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
BssNI GRCGYC 3 cut(s) 32, 44, 263
BssT1I CCWWGG 2 cut(s) 846, 861
Bst2UI CCWGG 3 cut(s) 455, 493, 1067
Bst4CI ACNGT 3 cut(s) 280, 835, 991
Bst6I CTCTTC 3 cut(s) 504, 570, 999
BstACI GRCGYC 3 cut(s) 32, 44, 263
BstAPI GCANNNNNTGC 3 cut(s) 991, 1016, 1037
BstBAI YACGTR 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 99, 738
BstDEI CTNAG 7 cut(s) 128, 133, 158, 459, 483, 726, 825
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 2 cut(s) 21, 874
BstFNI CGCG 2 cut(s) 203, 316
BstKTI GATC 7 cut(s) 164, 290, 385, 465, 600, 787, 909
BstMAI GTCTC 2 cut(s) 35, 213
BstMBI GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
BstNI CCWGG 3 cut(s) 455, 493, 1067
BstSCI CCNGG 4 cut(s) 247, 453, 491, 1065
BstSFI CTRYAG 1 cut(s) 1029
BstSNI TACGTA 1 cut(s) 656
BstUI CGCG 2 cut(s) 203, 316
BstV1I GCAGC 6 cut(s) 638, 650, 655, 821, 1015, 1043
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 3 cut(s) 337, 452, 857
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 2 cut(s) 21, 874
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 99, 738
Cfr13I GGNCC 2 cut(s) 433, 451
CseI GACGC 3 cut(s) 52, 192, 271
Csp6I GTAC 1 cut(s) 253
CviAII CATG 4 cut(s) 175, 343, 665, 862
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 7 cut(s) 128, 133, 158, 459, 483, 726, 825
DpnI GATC 7 cut(s) 163, 289, 384, 464, 599, 786, 908
DpnII GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
Eam1104I CTCTTC 3 cut(s) 504, 570, 999
EarI CTCTTC 3 cut(s) 504, 570, 999
EciI GGCGGA 1 cut(s) 258
Ecl136II GAGCTC 4 cut(s) 309, 400, 514, 730
Eco105I TACGTA 1 cut(s) 656
Eco130I CCWWGG 2 cut(s) 846, 861
Eco147I AGGCCT 1 cut(s) 857
Eco24I GRGCYC 4 cut(s) 311, 402, 516, 732
Eco47I GGWCC 1 cut(s) 433
Eco53kI GAGCTC 4 cut(s) 309, 400, 514, 730
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 4 cut(s) 309, 400, 514, 730
EcoRII CCWGG 3 cut(s) 453, 491, 1065
EcoT14I CCWWGG 2 cut(s) 846, 861
EcoT22I ATGCAT 1 cut(s) 951
EcoT38I GRGCYC 4 cut(s) 311, 402, 516, 732
ErhI CCWWGG 2 cut(s) 846, 861
Esp3I CGTCTC 2 cut(s) 35, 213
FaeI CATG 4 cut(s) 178, 346, 668, 865
FaiI YATR 8 cut(s) 118, 176, 344, 623, 666, 689, 863, 951
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FatI CATG 4 cut(s) 174, 342, 664, 861
FauI CCCGC 2 cut(s) 138, 987
FokI GGATG 2 cut(s) 8, 881
FriOI GRGCYC 4 cut(s) 311, 402, 516, 732
FspBI CTAG 1 cut(s) 569
HaeIII GGCC 3 cut(s) 337, 452, 857
HapII CCGG 5 cut(s) 47, 58, 189, 248, 386
HgaI GACGC 3 cut(s) 52, 192, 271
Hin1I GRCGYC 3 cut(s) 32, 44, 263
Hin1II CATG 4 cut(s) 178, 346, 668, 865
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HindIII AAGCTT 6 cut(s) 99, 615, 734, 758, 777, 977
HinfI GANTC 1 cut(s) 560
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 5 cut(s) 47, 58, 189, 248, 386
Hpy166II GTNNAC 2 cut(s) 538, 555
Hpy188I TCNGA 7 cut(s) 161, 213, 261, 382, 425, 462, 484
Hpy188III TCNNGA 7 cut(s) 285, 331, 412, 569, 584, 764, 920
Hpy8I GTNNAC 2 cut(s) 538, 555
Hpy99I CGWCG 6 cut(s) 34, 197, 208, 265, 316, 356
HpyAV CCTTC 3 cut(s) 88, 526, 884
HpyCH4III ACNGT 3 cut(s) 280, 835, 991
HpyCH4IV ACGT 2 cut(s) 32, 655
HpyCH4V TGCA 6 cut(s) 373, 638, 713, 755, 949, 1031
HpyF3I CTNAG 7 cut(s) 128, 133, 158, 459, 483, 726, 825
HpySE526I ACGT 2 cut(s) 32, 655
Hsp92I GRCGYC 3 cut(s) 32, 44, 263
Hsp92II CATG 4 cut(s) 178, 346, 668, 865
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 197, 306, 397
Lsp1109I GCAGC 6 cut(s) 638, 650, 655, 821, 1015, 1043
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 569
MaeII ACGT 2 cut(s) 32, 655
MalI GATC 7 cut(s) 163, 289, 384, 464, 599, 786, 908
MbiI CCGCTC 1 cut(s) 274
MboI GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
MboII GAAGA 6 cut(s) 521, 557, 607, 622, 935, 1016
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 5 cut(s) 159, 311, 402, 516, 732
MluCI AATT 3 cut(s) 632, 912, 933
MmeI TCCRAC 2 cut(s) 284, 981
Mph1103I ATGCAT 1 cut(s) 951
MroXI GAANNNNTTC 2 cut(s) 564, 705
MseI TTAA 5 cut(s) 104, 111, 363, 554, 852
MspA1I CMGCKG 4 cut(s) 137, 228, 641, 1057
MspI CCGG 5 cut(s) 47, 58, 189, 248, 386
MspR9I CCNGG 4 cut(s) 249, 455, 493, 1067
Mva1269I GAATGC 1 cut(s) 951
MvaI CCWGG 3 cut(s) 455, 493, 1067
MvnI CGCG 2 cut(s) 203, 316
NciI CCSGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 861
NdeII GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
NlaIII CATG 4 cut(s) 178, 346, 668, 865
NlaIV GGNNCC 2 cut(s) 199, 384
NmeAIII GCCGAG 2 cut(s) 721, 991
NsiI ATGCAT 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 410
PceI AGGCCT 1 cut(s) 857
PciSI GCTCTTC 1 cut(s) 504
PctI GAATGC 1 cut(s) 951
PdmI GAANNNNTTC 2 cut(s) 564, 705
PfeI GAWTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 1065
Ppu21I YACGTR 1 cut(s) 656
Psp124BI GAGCTC 4 cut(s) 311, 402, 516, 732
Psp6I CCWGG 3 cut(s) 453, 491, 1065
PspGI CCWGG 3 cut(s) 453, 491, 1065
PspN4I GGNNCC 2 cut(s) 199, 384
PspPI GGNCC 2 cut(s) 433, 451
PstI CTGCAG 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 2 cut(s) 137, 641
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 4 cut(s) 311, 402, 516, 732
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 5 cut(s) 104, 111, 363, 554, 852
Sau3AI GATC 7 cut(s) 161, 287, 382, 462, 597, 784, 906
Sau96I GGNCC 2 cut(s) 433, 451
ScrFI CCNGG 4 cut(s) 249, 455, 493, 1067
SduI GDGCHC 5 cut(s) 159, 311, 402, 516, 732
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 410
SmlI CTYRAG 5 cut(s) 410, 473, 548, 731, 818
SmoI CTYRAG 5 cut(s) 410, 473, 548, 731, 818
SnaBI TACGTA 1 cut(s) 656
Sse9I AATT 3 cut(s) 632, 912, 933
SseBI AGGCCT 1 cut(s) 857
SspMI CTAG 1 cut(s) 569
SstI GAGCTC 4 cut(s) 311, 402, 516, 732
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 4 cut(s) 247, 453, 491, 1065
StyI CCWWGG 2 cut(s) 846, 861
TaaI ACNGT 3 cut(s) 280, 835, 991
TaiI ACGT 2 cut(s) 35, 658
TaqI TCGA 3 cut(s) 411, 699, 909
TaqII GACCGA 1 cut(s) 450
TasI AATT 3 cut(s) 632, 912, 933
TauI GCSGC 7 cut(s) 86, 89, 203, 231, 234, 247, 274
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 5 cut(s) 104, 111, 363, 554, 852
Tru9I TTAA 5 cut(s) 104, 111, 363, 554, 852
TscAI CASTG 1 cut(s) 523
TseI GCWGC 6 cut(s) 626, 638, 668, 809, 1028, 1031
TspDTI ATGAA 6 cut(s) 163, 349, 432, 537, 653, 914
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 2 cut(s) 912, 933
XbaI TCTAGA 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 410
XmnI GAANNNNTTC 2 cut(s) 564, 705
XspI CTAG 1 cut(s) 569
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.