Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0013627

Physical Location & Seq

Genomic Coordinates Reverse (-)

140107 .. 145160

Gene Structure 5054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

atgttgggttctttgggtcttcatctcacttgttcttttgagtctttatcgtgttccaaggactacctgagtccgagggtaactcaaactaaagcagtctcttttcagcttcgacatggagtattgtcccctccaggaggtataagatgtgggaagttggagcgtagtcgcagagtttcagcagttttgacggacgacagctcgagaatgacagtcagtgatgaagagatggaagatattggtgttctgagaacggattcaaacttggagccatacaaagatcacttcaagtatcgaataaaaagatatttggagcacaagagtctctttgagaaacatgaaggaggtttagaggaattcgcgcaaggttatgtgaaatttggatttaacagagaagatggtggaattgtgtaccgtgaatgggcccctgcagctcagcaggcacaacttgttggagactttaatggatgggatggctgcaaatacgagatggagaaggaccaatttggggtatggagtattaagatacccgatattggtggaagtccagctattcctcacaattcaaaggttaaattccggttcaagcatggaaagggagtttgggttgatcgtattcctgcttggattaaatatgccactgtggacccaacaagatttgcagctccatatgatggtgtgtactgggatccaccaccatcagaaaggtatcagtttaagtacgatcgtcctccaaaacccaaggctccacgaatatatgaggcccatgttggaatgagtagctcagaaccccgcatcagttcatacagagaatttgctgataatgttttgcctcgtatccaggcaaataactataacacagtccagctgatggccgtgatggagcattcctattatgcatccttcggttatcatgtgacaaacttctttgccgtaagctgtagatctggaacacctgaggaccttaaatatctaattgataaagcacattccctaggtttgcgtgtattgatggatgttgttcacagtcatgcaagtaacaacgtcactgatggcctcagtggctttgaagttggtcaatgcacacaagagtcctatttccacacaggagatagaggctaccataagctatgggatagccgacttttcaactatgctaattgggaagttctccgcttctttttatccaacttaaggtggtggctggaggagtatcaatttgatgggtttcgatttgatggagtaacttccatgctgtatcatcaccatggcataaatatggcatttacagggaattatgatgagtacttcagtgaggcaacagatgttgatgctgttgtttatttgatgcttgccaactatctgatccataaaatattgccatctgcaactgtaattgctgaagatgtttctgggatgcctggacttggtcggcctgtctctgaaggaggtgttggttttgactaccggctggcaatggccatacctgacaagtggattgattatgtgaaaaacaagaaagacgaagagtggtcgatgaaggaaatttcatggagattgacgaataggagatacaccgagaagtgtgtttcctatgctgagagtcatgaccaggcaattgtgggtgacaagacgattgcattctttttgatggataaagaaatgtactctggcatgtcttgtttgactgaagcttctcctactgttgtgcgcggggttgctcttcacaagatgatacattttataactatggcattaggaggcgagggttaccttaactttatgggtaatgagtttggacaccctgagtggattgactttccaagagaaggcaatgggtggagttatgaaaagtgcagacgccaatggaacctggtggatacagatcatttaagatataagtttatgaacgcatttgacagagctatgcacttgcttgatgagaaattttcgttcctttcatcagcgaagcagatagtgagcagcacaaatgaagaagacaaggttattgtctttgagcgtggagatctagtttttgtatttaattttcatccagtaaacacatacgatgggtacaaagtggggtgtgacttacctgggaagtacagagttgcactagatagtgatgcttttgaattcggtggacatggaagagtaggccatgttgtagaccacttcacattcccagaaggaataccaggggttcctgaaacaaatttcaacggccgtcccaactccttcagagtactctcaccaccgcgaacatgtgtggtttattatcgagtggatgaaagtaaggagactgctgtgaaggaggactcggcagcagaagttgtggttgggcaggagaactcccaattacttggatccgtgaaagatggaaatgttggtccaggagtggaagagaccgtcaaagtttcatcagataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase Alpha-amylase_C CBM_48

Protein Analysis

810

Amino Acids

92.29

Weight (kDa)

5.87

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013627)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37381 FvH4_2g37410
malus_domestica	MD08G1002300.v1.1
prunus_persica	Prupe.1G354000_v2.0.a1 Prupe.1G354000_v2.0.a1 Prupe.1G354000_v2.0.a1
pyrus_communis	pycom08g00150
rosa_chinensis	RchiOBHm_Chr6g0304311
rosa_laevigata	RLG00000010992
rosa_multiflora	Rmu_ssc0000218.1_g000037
rosa_roxburghii	Rroxscaffold_7G00163850
rosa_rugosa	Rorug06G0329900 Rorug06G0330000
rosa_samantha	Rh6AG443300 Rh6BG459100 Rh6CG456100 Rh6DG442800
rosa_wichuraiana	Rw6G038470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1745
AccB7I	CCANNNNNTGG	2 cut(s)	674, 871
AccI	GTMKAC	1 cut(s)	2169
AccII	CGCG	3 cut(s)	362, 1713, 2260
AciI	CCGC	4 cut(s)	793, 1174, 1713, 2258
AclWI	GGATC	5 cut(s)	683, 696, 1360, 2361, 2374
AcoI	YGGCCR	3 cut(s)	873, 1479, 2224
AcsI	RAATTY	8 cut(s)	356, 377, 575, 812, 1545, 1946, 2135, 2215
AcuI	CTGAAG	5 cut(s)	1294, 1422, 1464, 1710, 2224
AcyI	GRCGYC	1 cut(s)	1861
AfaI	GTAC	8 cut(s)	413, 683, 722, 1307, 1667, 2075, 2105, 2247
AfiI	CCNNNNNNNGG	9 cut(s)	137, 421, 508, 536, 674, 871, 1194, 1427, 1829
AflII	CTTAAG	1 cut(s)	1192
AflIII	ACRYGT	1 cut(s)	2264
AgsI	TTSAA	8 cut(s)	261, 289, 567, 586, 1070, 1150, 2135, 2221
AjnI	CCWGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
AjuI	GAANNNNNNNTTGG	6 cut(s)	586, 618, 1437, 1469, 2322, 2354
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	6 cut(s)	103, 329, 450, 1444, 2294, 2399
AlwI	GGATC	5 cut(s)	683, 696, 1360, 2361, 2374
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	8 cut(s)	423, 762, 873, 1054, 1433, 1479, 2158, 2224
ApaI	GGGCCC	1 cut(s)	427
ApeKI	GCWGC	5 cut(s)	431, 477, 662, 1983, 2324
ApoI	RAATTY	8 cut(s)	356, 377, 575, 812, 1545, 1946, 2135, 2215
Asp700I	GAANNNNTTC	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	994
AspLEI	GCGC	2 cut(s)	364, 1713
AspS9I	GGNCC	7 cut(s)	423, 424, 499, 646, 763, 961, 2390
AsuHPI	GGTGA	3 cut(s)	1256, 1637, 2244
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	499, 646, 961, 2390
AvrII	CCTAGG	1 cut(s)	994
AxyI	CCTNAGG	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	1481
BamHI	GGATCC	2 cut(s)	688, 2366
BanII	GRGCYC	1 cut(s)	427
BbsI	GAAGAC	2 cut(s)	11, 2004
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	5 cut(s)	443, 464, 674, 1995, 2336
BceAI	ACGGC	4 cut(s)	860, 917, 2211, 2239
BciT130I	CCWGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
BciVI	GTATCC	2 cut(s)	848, 1873
BcoDI	GTCTC	6 cut(s)	103, 329, 450, 1444, 2294, 2399
BfaI	CTAG	3 cut(s)	995, 2030, 2117
BfmI	CTRYAG	2 cut(s)	429, 940
BfrI	CTTAAG	1 cut(s)	1192
BfuI	GTATCC	2 cut(s)	848, 1873
BglI	GCCNNNNNGGC	1 cut(s)	1062
BglII	AGATCT	2 cut(s)	944, 2026
BisI	GCNGC	5 cut(s)	432, 478, 663, 1984, 2325
BlnI	CCTAGG	1 cut(s)	994
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	5 cut(s)	433, 479, 664, 1985, 2326
BmcAI	AGTACT	2 cut(s)	1307, 2247
Bme1390I	CCNGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
Bme18I	GGWCC	4 cut(s)	499, 646, 961, 2390
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	7 cut(s)	423, 424, 499, 646, 763, 961, 2390
BmiI	GGNNCC	9 cut(s)	270, 425, 426, 648, 690, 747, 1871, 2205, 2368
BmrFI	CCNGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	6 cut(s)	804, 908, 1321, 1338, 1407, 2116
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	2 cut(s)	11, 2004
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpmI	CTGGAG	2 cut(s)	117, 1226
Bpu1102I	GCTNAGC	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	1884
BsaHI	GRCGYC	1 cut(s)	1861
BsaI	GGTCTC	1 cut(s)	2399
BsaJI	CCNNGG	7 cut(s)	57, 74, 741, 994, 1267, 2096, 2198
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	4 cut(s)	591, 621, 2016, 2046
Bsc4I	CCNNNNNNNGG	9 cut(s)	137, 421, 508, 536, 674, 871, 1194, 1427, 1829
Bse118I	RCCGGY	1 cut(s)	1467
Bse1I	ACTGG	2 cut(s)	689, 2054
Bse21I	CCTNAGG	1 cut(s)	957
Bse3DI	GCAATG	2 cut(s)	1482, 1840
Bse8I	GATNNNNATC	1 cut(s)	1884
BseBI	CCWGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
BseDI	CCNNGG	7 cut(s)	57, 74, 741, 994, 1267, 2096, 2198
BseGI	GGATG	7 cut(s)	473, 478, 899, 1021, 1422, 2050, 2293
BseJI	GATNNNNATC	1 cut(s)	1884
BseLI	CCNNNNNNNGG	9 cut(s)	137, 421, 508, 536, 674, 871, 1194, 1427, 1829
BseMI	GCAATG	2 cut(s)	1482, 1840
BseMII	CTCAG	8 cut(s)	59, 239, 449, 798, 948, 1072, 1590, 1797
BseNI	ACTGG	2 cut(s)	689, 2054
BseRI	GAGGAG	1 cut(s)	1223
BseSI	GKGCMC	1 cut(s)	427
BseX3I	CGGCCG	1 cut(s)	2224
BseXI	GCAGC	5 cut(s)	443, 464, 674, 1995, 2336
BsgI	GTGCAG	1 cut(s)	1876
Bsh1236I	CGCG	3 cut(s)	362, 1713, 2260
Bsh1285I	CGRYCG	2 cut(s)	727, 2227
BshFI	GGCC	8 cut(s)	425, 764, 875, 1056, 1435, 1481, 2160, 2226
BsiEI	CGRYCG	2 cut(s)	727, 2227
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	580, 1468
BslFI	GGGAC	2 cut(s)	112, 2214
BslI	CCNNNNNNNGG	9 cut(s)	137, 421, 508, 536, 674, 871, 1194, 1427, 1829
BsmAI	GTCTC	6 cut(s)	103, 329, 450, 1444, 2294, 2399
BsmFI	GGGAC	2 cut(s)	112, 2214
BsmI	GAATGC	2 cut(s)	886, 1640
BsnI	GGCC	8 cut(s)	425, 764, 875, 1056, 1435, 1481, 2160, 2226
Bso31I	GGTCTC	1 cut(s)	2399
BsoBI	CYCGRG	1 cut(s)	202
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	318, 427
Bsp143I	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	1267
BspACI	CCGC	4 cut(s)	793, 1174, 1713, 2258
BspANI	GGCC	8 cut(s)	425, 764, 875, 1056, 1435, 1481, 2160, 2226
BspCNI	CTCAG	8 cut(s)	60, 240, 448, 797, 949, 1071, 1591, 1798
BspFNI	CGCG	3 cut(s)	362, 1713, 2260
BspHI	TCATGA	1 cut(s)	1606
BspLI	GGNNCC	9 cut(s)	270, 425, 426, 648, 690, 747, 1871, 2205, 2368
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	5 cut(s)	683, 696, 1360, 2361, 2374
BspQI	GCTCTTC	1 cut(s)	1728
BspTI	CTTAAG	1 cut(s)	1192
BspTNI	GGTCTC	1 cut(s)	2399
BsrDI	GCAATG	2 cut(s)	1482, 1840
BsrFI	RCCGGY	1 cut(s)	1467
BsrI	ACTGG	2 cut(s)	689, 2054
BssAI	RCCGGY	1 cut(s)	1467
BssECI	CCNNGG	7 cut(s)	57, 74, 741, 994, 1267, 2096, 2198
BssMI	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
BssNI	GRCGYC	1 cut(s)	1861
BssT1I	CCWWGG	4 cut(s)	57, 741, 994, 1267
Bst2UI	CCWGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
Bst4CI	ACNGT	8 cut(s)	214, 416, 643, 862, 1028, 1393, 1705, 2410
Bst6I	CTCTTC	5 cut(s)	219, 1521, 1728, 2146, 2397
BstACI	GRCGYC	1 cut(s)	1861
BstAFI	CTTAAG	1 cut(s)	1192
BstC8I	GCNNGC	3 cut(s)	441, 1353, 1473
BstDEI	CTNAG	8 cut(s)	68, 248, 435, 784, 957, 1058, 1599, 1806
BstDSI	CCRYGG	1 cut(s)	1267
BstEII	GGTNACC	1 cut(s)	1769
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	7 cut(s)	473, 478, 899, 1021, 1422, 2050, 2293
BstFNI	CGCG	3 cut(s)	362, 1713, 2260
BstHHI	GCGC	2 cut(s)	364, 1713
BstKTI	GATC	9 cut(s)	283, 613, 691, 727, 947, 1368, 1888, 2029, 2369
BstMAI	GTCTC	6 cut(s)	103, 329, 450, 1444, 2294, 2399
BstMBI	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
BstMCI	CGRYCG	2 cut(s)	727, 2227
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 1062
BstNI	CCWGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
BstNSI	RCATGY	2 cut(s)	1678, 2268
BstPI	GGTNACC	1 cut(s)	1769
BstSCI	CCNGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
BstSFI	CTRYAG	2 cut(s)	429, 940
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	3 cut(s)	362, 1713, 2260
BstV1I	GCAGC	5 cut(s)	443, 464, 674, 1995, 2336
BstV2I	GAAGAC	2 cut(s)	11, 2004
BstX2I	RGATCY	4 cut(s)	688, 944, 2026, 2366
BstXI	CCANNNNNNTGG	1 cut(s)	2363
BstYI	RGATCY	4 cut(s)	688, 944, 2026, 2366
BstZI	CGGCCG	1 cut(s)	2224
Bsu36I	CCTNAGG	1 cut(s)	957
BsuI	GTATCC	2 cut(s)	848, 1873
BsuRI	GGCC	8 cut(s)	425, 764, 875, 1056, 1435, 1481, 2160, 2226
BtgI	CCRYGG	1 cut(s)	1267
BtsCI	GGATG	7 cut(s)	473, 478, 899, 1021, 1422, 2050, 2293
BtsIMutI	CAGTG	5 cut(s)	223, 639, 1047, 1066, 1318
Cac8I	GCNNGC	3 cut(s)	441, 1353, 1473
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	2 cut(s)	364, 1713
Cfr10I	RCCGGY	1 cut(s)	1467
Cfr13I	GGNCC	7 cut(s)	423, 424, 499, 646, 763, 961, 2390
CseI	GACGC	1 cut(s)	1869
CsiI	ACCWGGT	1 cut(s)	1872
Csp6I	GTAC	8 cut(s)	412, 682, 721, 1306, 1666, 2074, 2104, 2246
CviQI	GTAC	8 cut(s)	412, 682, 721, 1306, 1666, 2074, 2104, 2246
DdeI	CTNAG	8 cut(s)	68, 248, 435, 784, 957, 1058, 1599, 1806
DpnI	GATC	9 cut(s)	282, 612, 690, 726, 946, 1367, 1887, 2028, 2368
DpnII	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
EaeI	YGGCCR	3 cut(s)	873, 1479, 2224
EagI	CGGCCG	1 cut(s)	2224
Eam1104I	CTCTTC	5 cut(s)	219, 1521, 1728, 2146, 2397
EarI	CTCTTC	5 cut(s)	219, 1521, 1728, 2146, 2397
EclXI	CGGCCG	1 cut(s)	2224
Eco130I	CCWWGG	4 cut(s)	57, 741, 994, 1267
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	2399
Eco47I	GGWCC	4 cut(s)	499, 646, 961, 2390
Eco52I	CGGCCG	1 cut(s)	2224
Eco57I	CTGAAG	5 cut(s)	1294, 1422, 1464, 1710, 2224
Eco81I	CCTNAGG	1 cut(s)	957
Eco88I	CYCGRG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	1769
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	2 cut(s)	424, 961
EcoO65I	GGTNACC	1 cut(s)	1769
EcoRI	GAATTC	2 cut(s)	356, 2135
EcoRII	CCWGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
EcoT14I	CCWWGG	4 cut(s)	57, 741, 994, 1267
EcoT22I	ATGCAT	1 cut(s)	901
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	4 cut(s)	57, 741, 994, 1267
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	112, 2214
FauI	CCCGC	2 cut(s)	800, 1706
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	2169
Fnu4HI	GCNGC	5 cut(s)	432, 478, 663, 1984, 2325
FokI	GGATG	7 cut(s)	480, 485, 886, 1028, 1429, 2037, 2300
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	5 cut(s)	432, 478, 663, 1984, 2325
FspBI	CTAG	3 cut(s)	995, 2030, 2117
GlaI	GCGC	2 cut(s)	363, 1712
GluI	GCNGC	5 cut(s)	432, 478, 663, 1984, 2325
GsuI	CTGGAG	2 cut(s)	117, 1226
HaeIII	GGCC	8 cut(s)	425, 764, 875, 1056, 1435, 1481, 2160, 2226
HapII	CCGG	2 cut(s)	580, 1468
HgaI	GACGC	1 cut(s)	1869
HhaI	GCGC	2 cut(s)	364, 1713
Hin1I	GRCGYC	1 cut(s)	1861
Hin6I	GCGC	2 cut(s)	362, 1711
HinP1I	GCGC	2 cut(s)	362, 1711
HindIII	AAGCTT	1 cut(s)	1692
HinfI	GANTC	7 cut(s)	41, 70, 257, 322, 1091, 1603, 2318
HpaII	CCGG	2 cut(s)	580, 1468
HphI	GGTGA	3 cut(s)	1256, 1637, 2244
Hpy166II	GTNNAC	7 cut(s)	412, 646, 682, 1024, 2059, 2144, 2170
Hpy188I	TCNGA	8 cut(s)	75, 249, 703, 787, 1365, 1444, 2243, 2425
Hpy188III	TCNNGA	4 cut(s)	204, 948, 1607, 2207
Hpy8I	GTNNAC	7 cut(s)	412, 646, 682, 1024, 2059, 2144, 2170
HpyAV	CCTTC	9 cut(s)	335, 490, 913, 1439, 1534, 1823, 2183, 2248, 2305
HpyCH4III	ACNGT	8 cut(s)	214, 416, 643, 862, 1028, 1393, 1705, 2410
HpyCH4IV	ACGT	1 cut(s)	1044
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 1062
HpyF3I	CTNAG	8 cut(s)	68, 248, 435, 784, 957, 1058, 1599, 1806
HpySE526I	ACGT	1 cut(s)	1044
Hsp92I	GRCGYC	1 cut(s)	1861
HspAI	GCGC	2 cut(s)	362, 1711
Kzo9I	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
LguI	GCTCTTC	1 cut(s)	1728
LmnI	GCTCC	6 cut(s)	160, 268, 313, 670, 751, 883
Lsp1109I	GCAGC	5 cut(s)	443, 464, 674, 1995, 2336
LweI	GCATC	6 cut(s)	804, 908, 1321, 1338, 1407, 2116
MabI	ACCWGGT	1 cut(s)	1872
MaeI	CTAG	3 cut(s)	995, 2030, 2117
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	8 cut(s)	79, 916, 1037, 1045, 1243, 1625, 1769, 2087
MalI	GATC	9 cut(s)	282, 612, 690, 726, 946, 1367, 1887, 2028, 2368
MboI	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
MfeI	CAATTG	1 cut(s)	1617
MflI	RGATCY	4 cut(s)	688, 944, 2026, 2366
MhlI	GDGCHC	2 cut(s)	318, 427
MlsI	TGGCCA	1 cut(s)	1481
MluNI	TGGCCA	1 cut(s)	1481
MlyI	GAGTC	6 cut(s)	50, 79, 331, 1100, 1612, 2312
MmeI	TCCRAC	4 cut(s)	138, 433, 751, 1212
Mox20I	TGGCCA	1 cut(s)	1481
Mph1103I	ATGCAT	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	1481
MslI	CAYNNNNRTG	3 cut(s)	1029, 1266, 1277
Msp20I	TGGCCA	1 cut(s)	1481
MspA1I	CMGCKG	1 cut(s)	868
MspCI	CTTAAG	1 cut(s)	1192
MspI	CCGG	2 cut(s)	580, 1468
MspR9I	CCNGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
MunI	CAATTG	1 cut(s)	1617
Mva1269I	GAATGC	2 cut(s)	886, 1640
MvaI	CCWGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
MvnI	CGCG	3 cut(s)	362, 1713, 2260
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 1062
NcoI	CCATGG	1 cut(s)	1267
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
NlaIV	GGNNCC	9 cut(s)	270, 425, 426, 648, 690, 747, 1871, 2205, 2368
NmeAIII	GCCGAG	1 cut(s)	2300
NmuCI	GTSAC	4 cut(s)	916, 1045, 1625, 2087
NsiI	ATGCAT	1 cut(s)	901
NspI	RCATGY	2 cut(s)	1678, 2268
PaeR7I	CTCGAG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	1606
PciI	ACATGT	1 cut(s)	2264
PciSI	GCTCTTC	1 cut(s)	1728
PctI	GAATGC	2 cut(s)	886, 1640
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	1428
PflMI	CCANNNNNTGG	2 cut(s)	674, 871
PfoI	TCCNGGA	2 cut(s)	133, 2392
PkrI	GCNGC	5 cut(s)	433, 479, 664, 1985, 2326
Ple19I	CGATCG	1 cut(s)	727
PleI	GAGTC	6 cut(s)	49, 78, 330, 1099, 1611, 2312
PpsI	GAGTC	6 cut(s)	49, 78, 330, 1099, 1611, 2312
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	1 cut(s)	2264
PsiI	TTATAA	1 cut(s)	1745
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
PspEI	GGTNACC	1 cut(s)	1769
PspGI	CCWGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
PspN4I	GGNNCC	9 cut(s)	270, 425, 426, 648, 690, 747, 1871, 2205, 2368
PspOMI	GGGCCC	1 cut(s)	423
PspPI	GGNCC	7 cut(s)	423, 424, 499, 646, 763, 961, 2390
PspPPI	RGGWCCY	1 cut(s)	961
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	4 cut(s)	688, 944, 2026, 2366
PsyI	GACNNNGTC	1 cut(s)	1428
PvuI	CGATCG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	8 cut(s)	413, 683, 722, 1307, 1667, 2075, 2105, 2247
RsaNI	GTAC	8 cut(s)	412, 682, 721, 1306, 1666, 2074, 2104, 2246
RseI	CAYNNNNRTG	3 cut(s)	1029, 1266, 1277
SapI	GCTCTTC	1 cut(s)	1728
SatI	GCNGC	5 cut(s)	432, 478, 663, 1984, 2325
Sau3AI	GATC	9 cut(s)	280, 610, 688, 724, 944, 1365, 1885, 2026, 2366
Sau96I	GGNCC	7 cut(s)	423, 424, 499, 646, 763, 961, 2390
ScaI	AGTACT	2 cut(s)	1307, 2247
SchI	GAGTC	6 cut(s)	50, 79, 331, 1100, 1612, 2312
ScrFI	CCNGG	8 cut(s)	135, 842, 1422, 1613, 1874, 2097, 2199, 2394
SduI	GDGCHC	2 cut(s)	318, 427
SexAI	ACCWGGT	1 cut(s)	1872
SfaNI	GCATC	6 cut(s)	804, 908, 1321, 1338, 1407, 2116
SfcI	CTRYAG	2 cut(s)	429, 940
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	4 cut(s)	499, 646, 961, 2390
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	3 cut(s)	1029, 1266, 1277
SmlI	CTYRAG	2 cut(s)	202, 1192
SmoI	CTYRAG	2 cut(s)	202, 1192
SsiI	CCGC	4 cut(s)	793, 1174, 1713, 2258
SspI	AATATT	1 cut(s)	1377
SspMI	CTAG	3 cut(s)	995, 2030, 2117
StyD4I	CCNGG	8 cut(s)	133, 840, 1420, 1611, 1872, 2095, 2197, 2392
StyI	CCWWGG	4 cut(s)	57, 741, 994, 1267
TaaI	ACNGT	8 cut(s)	214, 416, 643, 862, 1028, 1393, 1705, 2410
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	6 cut(s)	112, 203, 295, 1231, 1535, 2281
TatI	WGTACW	5 cut(s)	681, 1305, 1665, 2103, 2245
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	5 cut(s)	223, 646, 1054, 1066, 1318
TseFI	GTSAC	4 cut(s)	916, 1045, 1625, 2087
TseI	GCWGC	5 cut(s)	431, 477, 662, 1983, 2324
Tsp45I	GTSAC	4 cut(s)	916, 1045, 1625, 2087
TspGWI	ACGGA	3 cut(s)	206, 269, 2359
TspRI	CASTG	5 cut(s)	223, 646, 1054, 1066, 1318
Tth111I	GACNNNGTC	1 cut(s)	1428
Van91I	CCANNNNNTGG	2 cut(s)	674, 871
Vha464I	CTTAAG	1 cut(s)	1192
VpaK11BI	GGWCC	4 cut(s)	499, 646, 961, 2390
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	8 cut(s)	356, 377, 575, 812, 1545, 1946, 2135, 2215
XceI	RCATGY	2 cut(s)	1678, 2268
XhoI	CTCGAG	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	2169
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	3 cut(s)	995, 2030, 2117
ZrmI	AGTACT	2 cut(s)	1307, 2247
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.