Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0006733

Physical Location & Seq

Genomic Coordinates Reverse (-)

237442 .. 246294

Gene Structure 8853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000255.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

atggccttgtttcgcaggctgcttcctcctctctgctcctccatcaacaggacgagcttttgctcatctggagctctacaaggttttcggagttatggagccattgatacacccgagccaaccgtgttgaaatttgagaatggagagacggctgattctgtgactgctggtgatgagatagcaaagattcggcgtgaatttgatgccgcaaagcagagtttcctcaagattccacaggcacttcaagaattgccgaagatgaatccggaaggtttgtcagtccgaattcatttaaatttaggttttcggagttatggagccattgatacacccgagccaaccgtgttgaagaaatttgagaatggagagaaggctgatgctgtgactgctgatgatgagatagcaaagattcggcgtgaattcgatgccgcaaagcagagtttcctcaagattccacaggcacttcaagaattgccgaagatgaatccggaagggatatatgtaaataaaaacctcaggttggacagtattcaagtttatggatttgactatgactacacgctggtgcattactcggcagatttacagaacttgatatatgatcttgctaaggagcatatggtcaatgagttccggtatcctcatgtttgcatggaatttaagtacgatcctacttttcccattagaggactgtgctatgacaaattgaaagggtgtctcttgaagctggacttttttgggtcaattgagccagatggatgctactatggtcgtcgaaagcttagtaggaaggaaatagatgagatatatggcacaaggcgtatcggtcgtgatcaagcaggaagccttgttgggttgatggatttcttctgctttagtgaggcatgcctgattgcagacatcgtacaatattttgtggatgctaagctggaatttgatgcttgctacatctatcaagatgtaaatcgtgcgattcagcatgttcaccatacaggccttgttcatagaggaattctttctgatccccgtaaatatcttgttaaaaatgaccagctgttacactttctgaagatgctcagggaaaaaggaaagaaacttttcttgctgactaactctccatattactttgtggatagaggaatgcgttttttgttggaggattctttgggttgtaatgactcttggagggaactttttgacgttgtgattgccaaagccaataagccagatttctacacatctgagcatccattccgttgttatgatgcagagaaggataatttagctttcatgaaggtggatgcgtttcttcctaataaaatttattaccacggatgcctgaaatcattccttcaaattactaagtggaagggaccagaggtgatatactttggtgatcacctctttagcgacctaaggggaccatcaaaagctggttggcgcactgctgctataatccatgaactagaagatgaaatacgtatacaaaatgaggatgcttaccgcgtggagcaggcaaaatttcatatattccaagaattgcttggtagactgcatgcaacggtagctaatagtcagaaaagtgaggccaagttactgttggaggagctaaatgagtgcaggcgtaaggcaagctacaagatgaagagaatgttcaatagctctttcggagccactttccttacggataaaggtcaagaatctgctttctcgtatcatattcatcaatatgcagatgtctataccagtaagccagagaattttttgctctatccacctgaagcatggcttcatgcaccctacgatattaagattatgccacatcatgtgaaggttcgtctgacttatatcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

618

Amino Acids

71.52

Weight (kDa)

7.04

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23890 AT2G23890 AT2G23890
fragaria_vesca	FvH4_4g08620 FvH4_4g08620 FvH4_4g08620 FvH4_4g08620 FvH4_4g08620 FvH4_4g08620 FvH4_4g08620 FvH4_4g08620
malus_domestica	MD16G1260500.v1.1
prunus_persica	Prupe.1G099400_v2.0.a1 Prupe.1G099400_v2.0.a1
pyrus_communis	pycom16g22840
rosa_chinensis	RchiOBHm_Chr4g0405151
rosa_laevigata	RLG00000008868
rosa_multiflora	Rmu_ssc0000255.1_g000038
rosa_roxburghii	Rroxscaffold_5G00349390
rosa_rugosa	Rorug04G0054300
rosa_samantha	Rh4AG129300 Rh4BG122800 Rh4BG122900 Rh4CG136400 Rh4DG122800
rosa_wichuraiana	Rw4G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1483, 1549
AccII	CGCG	1 cut(s)	1506
AccIII	TCCGGA	2 cut(s)	265, 487
AciI	CCGC	3 cut(s)	207, 429, 1504
AclWI	GGATC	2 cut(s)	662, 1016
AcuI	CTGAAG	2 cut(s)	1088, 1800
AfaI	GTAC	2 cut(s)	665, 906
AfiI	CCNNNNNNNGG	3 cut(s)	48, 520, 686
AgsI	TTSAA	9 cut(s)	130, 245, 349, 467, 533, 709, 724, 1355, 1657
AleI	CACNNNNGTG	1 cut(s)	563
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	140, 722
AlwI	GGATC	2 cut(s)	662, 1016
Ama87I	CYCGRG	2 cut(s)	113, 332
Aor13HI	TCCGGA	2 cut(s)	265, 487
AoxI	GGCC	3 cut(s)	3, 994, 1587
ApeKI	GCWGC	2 cut(s)	19, 1448
Asp700I	GAANNNNTTC	3 cut(s)	1015, 1097, 1346
AspLEI	GCGC	1 cut(s)	1443
AspS9I	GGNCC	2 cut(s)	1373, 1421
AsuHPI	GGTGA	5 cut(s)	182, 977, 1391, 1393, 1406
AvaI	CYCGRG	2 cut(s)	113, 332
AvaII	GGWCC	2 cut(s)	1373, 1421
AxyI	CCTNAGG	2 cut(s)	515, 1415
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	1461, 1493
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	6, 1435
BccI	CCATC	4 cut(s)	50, 749, 853, 1432
BceAI	ACGGC	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	2 cut(s)	832, 1396
BcoDI	GTCTC	2 cut(s)	140, 722
BfaI	CTAG	1 cut(s)	1466
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	4 cut(s)	20, 207, 429, 1449
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	4 cut(s)	21, 208, 430, 1450
Bme18I	GGWCC	2 cut(s)	1373, 1421
BmeT110I	CYCGRG	2 cut(s)	113, 332
BmgT120I	GGNCC	2 cut(s)	1373, 1421
BmiI	GGNNCC	5 cut(s)	100, 319, 1374, 1422, 1672
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	609, 1076
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	209, 431
BsaAI	YACGTR	1 cut(s)	1481
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	1 cut(s)	1330
BsaWI	WCCGGW	3 cut(s)	265, 487, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	1099, 1129
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 520, 686
Bse1I	ACTGG	1 cut(s)	1746
Bse21I	CCTNAGG	2 cut(s)	515, 1415
Bse8I	GATNNNNATC	1 cut(s)	963
BseAI	TCCGGA	2 cut(s)	265, 487
BseDI	CCNNGG	1 cut(s)	1330
BseGI	GGATG	6 cut(s)	764, 925, 1246, 1306, 1340, 1501
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	3 cut(s)	48, 520, 686
BseMII	CTCAG	3 cut(s)	529, 1090, 1233
BseNI	ACTGG	1 cut(s)	1746
BseRI	GAGGAG	3 cut(s)	18, 28, 1619
BseXI	GCAGC	2 cut(s)	6, 1435
BsgI	GTGCAG	1 cut(s)	1639
Bsh1236I	CGCG	1 cut(s)	1506
Bsh1285I	CGRYCG	1 cut(s)	829
BshFI	GGCC	3 cut(s)	5, 996, 1589
BsiEI	CGRYCG	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	113, 332
BsiSI	CCGG	3 cut(s)	266, 488, 634
BslFI	GGGAC	2 cut(s)	1386, 1434
BslI	CCNNNNNNNGG	3 cut(s)	48, 520, 686
BsmAI	GTCTC	2 cut(s)	140, 722
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	1386, 1434
BsmI	GAATGC	1 cut(s)	1146
BsnI	GGCC	3 cut(s)	5, 996, 1589
BsoBI	CYCGRG	2 cut(s)	113, 332
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	2 cut(s)	265, 487
Bsp143I	GATC	5 cut(s)	601, 667, 832, 1021, 1396
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	3 cut(s)	207, 429, 1504
BspANI	GGCC	3 cut(s)	5, 996, 1589
BspCNI	CTCAG	3 cut(s)	528, 1089, 1234
BspEI	TCCGGA	2 cut(s)	265, 487
BspFNI	CGCG	1 cut(s)	1506
BspHI	TCATGA	1 cut(s)	1290
BspLI	GGNNCC	5 cut(s)	100, 319, 1374, 1422, 1672
BspPI	GGATC	2 cut(s)	662, 1016
BsrI	ACTGG	1 cut(s)	1746
BssECI	CCNNGG	1 cut(s)	1330
BssMI	GATC	5 cut(s)	601, 667, 832, 1021, 1396
BssNAI	GTATAC	1 cut(s)	1484
Bst1107I	GTATAC	1 cut(s)	1484
Bst4CI	ACNGT	6 cut(s)	124, 343, 527, 693, 1564, 1599
Bst6I	CTCTTC	1 cut(s)	1640
BstBAI	YACGTR	1 cut(s)	1481
BstC8I	GCNNGC	7 cut(s)	17, 886, 943, 1515, 1557, 1622, 1633
BstDEI	CTNAG	8 cut(s)	515, 609, 782, 924, 1076, 1242, 1362, 1415
BstDSI	CCRYGG	1 cut(s)	1330
BstF5I	GGATG	6 cut(s)	764, 925, 1246, 1306, 1340, 1501
BstFNI	CGCG	1 cut(s)	1506
BstHHI	GCGC	1 cut(s)	1443
BstKTI	GATC	5 cut(s)	604, 670, 835, 1024, 1399
BstMAI	GTCTC	2 cut(s)	140, 722
BstMBI	GATC	5 cut(s)	601, 667, 832, 1021, 1396
BstMCI	CGRYCG	1 cut(s)	829
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 1565
BstNSI	RCATGY	3 cut(s)	888, 983, 1559
BstSNI	TACGTA	1 cut(s)	1481
BstUI	CGCG	1 cut(s)	1506
BstV1I	GCAGC	2 cut(s)	6, 1435
BstZ17I	GTATAC	1 cut(s)	1484
Bsu36I	CCTNAGG	2 cut(s)	515, 1415
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	5, 996, 1589
BtgI	CCRYGG	1 cut(s)	1330
BtsCI	GGATG	6 cut(s)	764, 925, 1246, 1306, 1340, 1501
BtsI	GCAGTG	1 cut(s)	1443
BtsIMutI	CAGTG	1 cut(s)	1443
Cac8I	GCNNGC	7 cut(s)	17, 886, 943, 1515, 1557, 1622, 1633
CciI	TCATGA	1 cut(s)	1290
CfoI	GCGC	1 cut(s)	1443
Cfr13I	GGNCC	2 cut(s)	1373, 1421
Csp6I	GTAC	2 cut(s)	664, 905
CviQI	GTAC	2 cut(s)	664, 905
DdeI	CTNAG	8 cut(s)	515, 609, 782, 924, 1076, 1242, 1362, 1415
DpnI	GATC	5 cut(s)	603, 669, 834, 1023, 1398
DpnII	GATC	5 cut(s)	601, 667, 832, 1021, 1396
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	1640
EarI	CTCTTC	1 cut(s)	1640
Ecl136II	GAGCTC	1 cut(s)	74
Eco105I	TACGTA	1 cut(s)	1481
Eco147I	AGGCCT	1 cut(s)	996
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	1373, 1421
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	1088, 1800
Eco81I	CCTNAGG	2 cut(s)	515, 1415
Eco88I	CYCGRG	2 cut(s)	113, 332
EcoICRI	GAGCTC	1 cut(s)	74
EcoRI	GAATTC	3 cut(s)	285, 419, 1011
EcoT38I	GRGCYC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	140
FalI	AAGNNNNNCTT	6 cut(s)	716, 748, 1527, 1559, 1773, 1805
FaqI	GGGAC	2 cut(s)	1386, 1434
FauNDI	CATATG	1 cut(s)	618
FbaI	TGATCA	2 cut(s)	832, 1396
FblI	GTMKAC	2 cut(s)	1483, 1549
Fnu4HI	GCNGC	4 cut(s)	20, 207, 429, 1449
FokI	GGATG	6 cut(s)	771, 932, 1233, 1313, 1347, 1508
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	20, 207, 429, 1449
FspBI	CTAG	1 cut(s)	1466
GlaI	GCGC	1 cut(s)	1442
GluI	GCNGC	4 cut(s)	20, 207, 429, 1449
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	5, 996, 1589
HapII	CCGG	3 cut(s)	266, 488, 634
HhaI	GCGC	1 cut(s)	1443
Hin6I	GCGC	1 cut(s)	1441
HinP1I	GCGC	1 cut(s)	1441
HindIII	AAGCTT	1 cut(s)	779
HpaII	CCGG	3 cut(s)	266, 488, 634
HphI	GGTGA	5 cut(s)	182, 977, 1391, 1393, 1406
Hpy166II	GTNNAC	3 cut(s)	985, 1484, 1550
Hpy188I	TCNGA	9 cut(s)	90, 284, 309, 1021, 1068, 1243, 1578, 1670, 1842
Hpy8I	GTNNAC	3 cut(s)	985, 1484, 1550
Hpy99I	CGWCG	1 cut(s)	777
HpyAV	CCTTC	9 cut(s)	263, 364, 485, 784, 1267, 1288, 1361, 1363, 1825
HpyCH4III	ACNGT	6 cut(s)	124, 343, 527, 693, 1564, 1599
HpyCH4IV	ACGT	2 cut(s)	1200, 1480
HpyCH4V	TGCA	9 cut(s)	568, 651, 896, 1268, 1555, 1559, 1620, 1733, 1796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 1565
HpyF3I	CTNAG	8 cut(s)	515, 609, 782, 924, 1076, 1242, 1362, 1415
HpySE526I	ACGT	2 cut(s)	1200, 1480
HspAI	GCGC	1 cut(s)	1441
Kpn2I	TCCGGA	2 cut(s)	265, 487
Ksp22I	TGATCA	2 cut(s)	832, 1396
Kzo9I	GATC	5 cut(s)	601, 667, 832, 1021, 1396
LmnI	GCTCC	8 cut(s)	41, 71, 98, 317, 613, 1510, 1606, 1670
Lsp1109I	GCAGC	2 cut(s)	6, 1435
MaeI	CTAG	1 cut(s)	1466
MaeII	ACGT	2 cut(s)	1200, 1480
MaeIII	GTNAC	4 cut(s)	160, 382, 1056, 1593
MalI	GATC	5 cut(s)	603, 669, 834, 1023, 1398
MboI	GATC	5 cut(s)	601, 667, 832, 1021, 1396
MboII	GAAGA	8 cut(s)	268, 361, 490, 859, 1081, 1301, 1481, 1657
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	1172
MmeI	TCCRAC	3 cut(s)	501, 1134, 1581
MroI	TCCGGA	2 cut(s)	265, 487
MroXI	GAANNNNTTC	3 cut(s)	1015, 1097, 1346
MseI	TTAA	5 cut(s)	293, 660, 1041, 1809, 1855
MslI	CAYNNNNRTG	3 cut(s)	563, 1295, 1728
MspA1I	CMGCKG	1 cut(s)	1054
MspI	CCGG	3 cut(s)	266, 488, 634
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	1146
MvnI	CGCG	1 cut(s)	1506
MwoI	GCNNNNNNNGC	2 cut(s)	386, 1565
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	5 cut(s)	601, 667, 832, 1021, 1396
NlaIV	GGNNCC	5 cut(s)	100, 319, 1374, 1422, 1672
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	2 cut(s)	160, 382
NspI	RCATGY	3 cut(s)	888, 983, 1559
OliI	CACNNNNGTG	1 cut(s)	563
PaeI	GCATGC	2 cut(s)	888, 1559
PagI	TCATGA	1 cut(s)	1290
PceI	AGGCCT	1 cut(s)	996
PctI	GAATGC	1 cut(s)	1146
PdmI	GAANNNNTTC	3 cut(s)	1015, 1097, 1346
PkrI	GCNGC	4 cut(s)	21, 208, 430, 1450
PleI	GAGTC	1 cut(s)	1172
PpsI	GAGTC	1 cut(s)	1172
Ppu21I	YACGTR	1 cut(s)	1481
Psp124BI	GAGCTC	1 cut(s)	76
PspN4I	GGNNCC	5 cut(s)	100, 319, 1374, 1422, 1672
PspPI	GGNCC	2 cut(s)	1373, 1421
PvuII	CAGCTG	1 cut(s)	1054
RsaI	GTAC	2 cut(s)	665, 906
RsaNI	GTAC	2 cut(s)	664, 905
RseI	CAYNNNNRTG	3 cut(s)	563, 1295, 1728
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	5 cut(s)	293, 660, 1041, 1809, 1855
SatI	GCNGC	4 cut(s)	20, 207, 429, 1449
Sau3AI	GATC	5 cut(s)	601, 667, 832, 1021, 1396
Sau96I	GGNCC	2 cut(s)	1373, 1421
SchI	GAGTC	1 cut(s)	1172
SduI	GDGCHC	1 cut(s)	76
SinI	GGWCC	2 cut(s)	1373, 1421
SmiI	ATTTAAAT	1 cut(s)	294
SmiMI	CAYNNNNRTG	3 cut(s)	563, 1295, 1728
SmlI	CTYRAG	2 cut(s)	224, 446
SmoI	CTYRAG	2 cut(s)	224, 446
SnaBI	TACGTA	1 cut(s)	1481
SphI	GCATGC	2 cut(s)	888, 1559
SseBI	AGGCCT	1 cut(s)	996
SsiI	CCGC	3 cut(s)	207, 429, 1504
SspI	AATATT	1 cut(s)	911
SspMI	CTAG	1 cut(s)	1466
SstI	GAGCTC	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	996
SwaI	ATTTAAAT	1 cut(s)	294
TaaI	ACNGT	6 cut(s)	124, 343, 527, 693, 1564, 1599
TaiI	ACGT	2 cut(s)	1203, 1483
TaqI	TCGA	2 cut(s)	423, 775
TaqII	GACCGA	1 cut(s)	815
TauI	GCSGC	2 cut(s)	209, 431
Tru1I	TTAA	5 cut(s)	293, 660, 1041, 1809, 1855
Tru9I	TTAA	5 cut(s)	293, 660, 1041, 1809, 1855
TscAI	CASTG	1 cut(s)	1450
TseFI	GTSAC	2 cut(s)	160, 382
TseI	GCWGC	2 cut(s)	19, 1448
Tsp45I	GTSAC	2 cut(s)	160, 382
TspGWI	ACGGA	3 cut(s)	1244, 1347, 1700
TspRI	CASTG	1 cut(s)	1450
VpaK11BI	GGWCC	2 cut(s)	1373, 1421
XceI	RCATGY	3 cut(s)	888, 983, 1559
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1541, 1597, 1782
XmiI	GTMKAC	2 cut(s)	1483, 1549
XmnI	GAANNNNTTC	3 cut(s)	1015, 1097, 1346
XspI	CTAG	1 cut(s)	1466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.