Rmu_ssc0000260.1_g000001

flavanone 4-reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000260.1
OG0013441
Physical Location & Seq
Forward (+)
1 .. 2689
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000260.1_g000001.1.cds

Sequence Viewer

Length: 932 bp
ccaagtgtttgcaccttctatcattgtgggccggcactgaccggctgagattattccgagctgatttgcaagaagaaggaagcttcgacgaggctgttaagggatgcgatggcgtgtttcacgttgcagcatcaatgcaattcagtgttcctgtggaagagaacattgaggcttatgttcaatcaaatatcatcgaccctgcaatcaaaggaaccttggacctcctcaaatcctgtgtgaaatcgggtaccgtgaatagggttgtgcttacctcttctatcagtactatgactgccaaagatagcaatggaaatccaatctctgttgttgacgaatcttgcaaaactccagttgatcgtgtctgggatgagaaagcaagtggatgggtttatgctctttcaaagatcctcacagaggaagcagcatttagatttgcaagtgagaatggcgttaagcttgtttcagtaataacaagtactgttggaggaccatttgtcacttccaatgttccatcaagcattcgagttcttttgtcaccattgacaggtgactctcagctctatgggatattaactgctgtaaatgcaagaatgggatcaattgtattagttcacattgaggacatatgcaatgcccacatttttttaatggagaataatgaagcagaaggaagatacatatgtgctgccaaaagtattccaatgtctgagttggttctttatctagctcaggcatttccttcctcaaattcacagagatgcagggttgtggcggaggaagaacagaataatccagcaccctctgagatatcttcaaagaagctaagtgatttgggttttaattacaagcatggagtagaagatattattcaccagtcagtttcttcttgtctggattttggccttctacctcgtactggaaattgtaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

309

Amino Acids

33.49

Weight (kDa)

5.14

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27250 AT4G27250
fragaria_vesca FvH4_3g21610
malus_domestica MD03G1214100.v1.1 MD11G1229100.v1.1
prunus_persica Prupe.4G200500_v2.0.a1 Prupe.4G200500_v2.0.a1
pyrus_communis pycom11g20310
rosa_chinensis RchiOBHm_Chr5g0037071
rosa_laevigata RLG00000033749
rosa_multiflora Rmu_ssc0000260.1_g000001
rosa_roxburghii Rroxscaffold_1G00043880
rosa_rugosa Rorug05G0160200
rosa_samantha Rh5AG252300 Rh5BG254100 Rh5CG286700 Rh5DG262600
rosa_wichuraiana Rw5G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 1 cut(s) 772
AclWI GGATC 2 cut(s) 399, 603
AcsI RAATTY 1 cut(s) 747
AfaI GTAC 4 cut(s) 249, 285, 477, 915
AfiI CCNNNNNNNGG 4 cut(s) 257, 414, 544, 916
AgsI TTSAA 3 cut(s) 181, 401, 815
AhdI GACNNNNNGTC 1 cut(s) 493
AluBI AGCT 6 cut(s) 61, 83, 456, 558, 727, 822
AluI AGCT 6 cut(s) 61, 83, 456, 558, 727, 822
AlwI GGATC 2 cut(s) 399, 603
AoxI GGCC 2 cut(s) 29, 900
ApeKI GCWGC 3 cut(s) 127, 421, 685
ApoI RAATTY 1 cut(s) 747
Asp718I GGTACC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 29, 219, 487
AsuHPI GGTGA 3 cut(s) 527, 559, 862
AvaII GGWCC 2 cut(s) 219, 487
BaeI ACNNNNGTAYC 2 cut(s) 666, 699
BanI GGYRCC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 139, 433, 672
BccI CCATC 3 cut(s) 103, 377, 519
BfaI CTAG 2 cut(s) 724, 930
BisI GCNGC 3 cut(s) 128, 422, 686
BlsI GCNGC 3 cut(s) 129, 423, 687
BmcAI AGTACT 2 cut(s) 285, 477
Bme18I GGWCC 2 cut(s) 219, 487
BmeRI GACNNNNNGTC 1 cut(s) 493
BmgT120I GGNCC 3 cut(s) 29, 219, 487
BmiI GGNNCC 2 cut(s) 213, 249
BmsI GCATC 3 cut(s) 94, 139, 748
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 414, 544, 916
Bse118I RCCGGY 2 cut(s) 31, 41
Bse1I ACTGG 3 cut(s) 349, 873, 921
Bse3DI GCAATG 2 cut(s) 312, 636
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 109, 372, 388
BseLI CCNNNNNNNGG 4 cut(s) 257, 414, 544, 916
BseMI GCAATG 2 cut(s) 312, 636
BseMII CTCAG 5 cut(s) 37, 568, 698, 742, 794
BseNI ACTGG 3 cut(s) 349, 873, 921
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 3 cut(s) 139, 433, 672
BshFI GGCC 2 cut(s) 31, 902
BshNI GGYRCC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 32, 42
BslI CCNNNNNNNGG 4 cut(s) 257, 414, 544, 916
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 2 cut(s) 31, 902
Bsp143I GATC 3 cut(s) 354, 404, 595
BspACI CCGC 1 cut(s) 772
BspANI GGCC 2 cut(s) 31, 902
BspCNI CTCAG 5 cut(s) 38, 567, 699, 741, 795
BspLI GGNNCC 2 cut(s) 213, 249
BspPI GGATC 2 cut(s) 399, 603
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 312, 636
BsrFI RCCGGY 2 cut(s) 31, 41
BsrI ACTGG 3 cut(s) 349, 873, 921
BssAI RCCGGY 2 cut(s) 31, 41
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 3 cut(s) 354, 404, 595
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 252, 480
Bst6I CTCTTC 2 cut(s) 152, 279
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 6 cut(s) 46, 554, 707, 728, 803, 823
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 3 cut(s) 109, 372, 388
BstKTI GATC 3 cut(s) 357, 407, 598
BstMBI GATC 3 cut(s) 354, 404, 595
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstV1I GCAGC 3 cut(s) 139, 433, 672
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 31, 902
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 3 cut(s) 109, 372, 388
BtsIMutI CAGTG 2 cut(s) 35, 150
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 31, 41
Cfr13I GGNCC 3 cut(s) 29, 219, 487
Csp6I GTAC 4 cut(s) 248, 284, 476, 914
CviAII CATG 1 cut(s) 850
CviQI GTAC 4 cut(s) 248, 284, 476, 914
DdeI CTNAG 6 cut(s) 46, 554, 707, 728, 803, 823
DpnI GATC 3 cut(s) 356, 406, 597
DpnII GATC 3 cut(s) 354, 404, 595
DriI GACNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 152, 279
Eam1105I GACNNNNNGTC 1 cut(s) 493
EarI CTCTTC 2 cut(s) 152, 279
EciI GGCGGA 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 215
Eco32I GATATC 1 cut(s) 809
Eco47I GGWCC 2 cut(s) 219, 487
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 1 cut(s) 853
FaiI YATR 9 cut(s) 176, 289, 392, 563, 625, 627, 679, 681, 851
FatI CATG 1 cut(s) 849
FauNDI CATATG 2 cut(s) 625, 679
Fnu4HI GCNGC 3 cut(s) 128, 422, 686
FokI GGATG 3 cut(s) 116, 379, 395
Fsp4HI GCNGC 3 cut(s) 128, 422, 686
FspBI CTAG 2 cut(s) 724, 930
GluI GCNGC 3 cut(s) 128, 422, 686
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 31, 902
HapII CCGG 2 cut(s) 32, 42
Hin1II CATG 1 cut(s) 853
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 81, 454
HinfI GANTC 2 cut(s) 334, 550
HpaII CCGG 2 cut(s) 32, 42
HphI GGTGA 3 cut(s) 527, 559, 862
Hpy166II GTNNAC 2 cut(s) 330, 612
Hpy188I TCNGA 3 cut(s) 58, 708, 804
Hpy188III TCNNGA 1 cut(s) 892
Hpy8I GTNNAC 2 cut(s) 330, 612
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 5 cut(s) 25, 70, 661, 749, 913
HpyCH4III ACNGT 2 cut(s) 252, 480
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 6 cut(s) 46, 554, 707, 728, 803, 823
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 853
KpnI GGTACC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 354, 404, 595
Lsp1109I GCAGC 3 cut(s) 139, 433, 672
LweI GCATC 3 cut(s) 94, 139, 748
MaeI CTAG 2 cut(s) 724, 930
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 4 cut(s) 495, 533, 547, 925
MalI GATC 3 cut(s) 356, 406, 597
MboI GATC 3 cut(s) 354, 404, 595
MboII GAAGA 8 cut(s) 85, 169, 266, 683, 790, 803, 871, 875
MfeI CAATTG 1 cut(s) 599
MflI RGATCY 1 cut(s) 404
MluCI AATT 5 cut(s) 139, 599, 747, 840, 921
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 31
MseI TTAA 5 cut(s) 98, 452, 571, 646, 839
MslI CAYNNNNRTG 1 cut(s) 756
MspI CCGG 2 cut(s) 32, 42
MunI CAATTG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 518
MwoI GCNNNNNNNGC 1 cut(s) 583
NaeI GCCGGC 1 cut(s) 33
NdeI CATATG 2 cut(s) 625, 679
NdeII GATC 3 cut(s) 354, 404, 595
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 853
NlaIV GGNNCC 2 cut(s) 213, 249
NmuCI GTSAC 3 cut(s) 495, 533, 547
PctI GAATGC 1 cut(s) 518
PdiI GCCGGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 3 cut(s) 129, 423, 687
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 213, 249
PspPI GGNCC 3 cut(s) 29, 219, 487
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 4 cut(s) 249, 285, 477, 915
RsaNI GTAC 4 cut(s) 248, 284, 476, 914
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 5 cut(s) 98, 452, 571, 646, 839
SatI GCNGC 3 cut(s) 128, 422, 686
Sau3AI GATC 3 cut(s) 354, 404, 595
Sau96I GGNCC 3 cut(s) 29, 219, 487
ScaI AGTACT 2 cut(s) 285, 477
SchI GAGTC 1 cut(s) 544
SfaNI GCATC 3 cut(s) 94, 139, 748
SinI GGWCC 2 cut(s) 219, 487
SmiMI CAYNNNNRTG 1 cut(s) 756
Sse9I AATT 5 cut(s) 139, 599, 747, 840, 921
SsiI CCGC 1 cut(s) 772
SspMI CTAG 2 cut(s) 724, 930
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 252, 480
TaiI ACGT 1 cut(s) 125
TaqI TCGA 3 cut(s) 86, 194, 522
TasI AATT 5 cut(s) 139, 599, 747, 840, 921
TatI WGTACW 2 cut(s) 283, 475
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 5 cut(s) 98, 452, 571, 646, 839
Tru9I TTAA 5 cut(s) 98, 452, 571, 646, 839
TscAI CASTG 2 cut(s) 42, 150
TseFI GTSAC 3 cut(s) 495, 533, 547
TseI GCWGC 3 cut(s) 127, 421, 685
Tsp45I GTSAC 3 cut(s) 495, 533, 547
TspDTI ATGAA 1 cut(s) 674
TspRI CASTG 2 cut(s) 42, 150
VpaK11BI GGWCC 2 cut(s) 219, 487
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 747
XspI CTAG 2 cut(s) 724, 930
ZrmI AGTACT 2 cut(s) 285, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.